Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010306

Physical Location & Seq

Genomic Coordinates Forward (+)

8907651 .. 8912888

Gene Structure 5238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G061800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGAGGACAAGGGGAAAGGAAACGAAAGATGGAACGGAGCCATAAGCAATCTGACAGAAATGTCCTTCAATTTGGAGTCACTCCAGAAGCTACTCCTCAAAAAGGCTGTCTTTGTTGACGAAGAAACCTTTGCCAAAGCCTCGCTTTGTTCCGAACAAGCACGAACCATCAAGGTTCTTGAGCAAAGAGTAGAAACTTTGGAGAGAGAACTTGATGCTGCCATTACAGCTGCTGCTCGTGTTCGTTCAGAAAAACGACAGGCTGAGGCAGCAGAAAAGGCTGCTGAATTACATGCACAGGAAGTTACAAAAGAGCTCGAGAACACCTCAAAGGTATTTGAGCTGCACATGGAAGAGTTGCGGGCAAAGCAAGAAGAAATAGCTAAGCGTGATAAGGAAATCAAACTCTTGGAAGCTATAATTCAGACGCTTGGGGGAAAGGAGTCGCATTCGAGAAAAGGGATAGGATATGTGCAAGATACTTTTACAATACAGCTCACCAGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

19.14

Weight (kDa)

5.59

Isoelectric Point (pI)

39.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64180 AT5G64180
fragaria_vesca	FvH4_1g26050
malus_domestica	MD00G1096800.v1.1 MD05G1163000.v1.1 MD05G1163200.v1.1 MD10G1152800.v1.1
prunus_persica	Prupe.8G061800_v2.0.a1 Prupe.8G061800_v2.0.a1
pyrus_communis	pycom05g15270 pycom10g13190
rosa_chinensis	RchiOBHm_Chr3g0485521
rosa_laevigata	RLG00000023146
rosa_multiflora	Rmu_sc0001272.1_g000017
rosa_roxburghii	Rroxscaffold_6G00396680 Rroxscaffold_6G00396960
rosa_rugosa	Rorug03G0219500 Rorug03G0219600 Rorug03G0219700
rosa_samantha	Rh3BG303900
rosa_wichuraiana	Rw3G023920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	61
AciI	CCGC	1 cut(s)	361
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	1 cut(s)	70
AluBI	AGCT	8 cut(s)	91, 230, 316, 343, 383, 416, 496, 504
AluI	AGCT	8 cut(s)	91, 230, 316, 343, 383, 416, 496, 504
Alw21I	GWGCWC	1 cut(s)	318
AlwNI	CAGNNNCTG	1 cut(s)	233
Ama87I	CYCGRG	1 cut(s)	317
ApeKI	GCWGC	6 cut(s)	218, 230, 233, 269, 281, 343
ArsI	GACNNNNNNTTYG	2 cut(s)	93, 125
AsuHPI	GGTGA	1 cut(s)	490
AvaI	CYCGRG	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	318
BauI	CACGAG	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	318
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	6 cut(s)	205, 217, 220, 268, 281, 330
BccI	CCATC	2 cut(s)	24, 176
BisI	GCNGC	6 cut(s)	219, 231, 234, 270, 282, 344
BlpI	GCTNAGC	1 cut(s)	384
BlsI	GCNGC	6 cut(s)	220, 232, 235, 271, 283, 345
BmeT110I	CYCGRG	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	40
BmsI	GCATC	1 cut(s)	205
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
BpmI	CTGGAG	1 cut(s)	68
Bpu10I	CCTNAGC	1 cut(s)	264
Bpu1102I	GCTNAGC	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMII	CTCAG	1 cut(s)	255
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	6 cut(s)	205, 217, 220, 268, 281, 330
BsgI	GTGCAG	1 cut(s)	329
BsiHKAI	GWGCWC	1 cut(s)	318
BsiHKCI	CYCGRG	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmI	GAATGC	1 cut(s)	448
BsoBI	CYCGRG	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp1720I	GCTNAGC	1 cut(s)	384
BspACI	CCGC	1 cut(s)	361
BspCNI	CTCAG	1 cut(s)	256
BspLI	GGNNCC	1 cut(s)	40
BssSI	CACGAG	1 cut(s)	237
Bst2BI	CACGAG	1 cut(s)	237
Bst6I	CTCTTC	1 cut(s)	348
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	2 cut(s)	264, 384
BstENI	CCTNNNNNAGG	1 cut(s)	101
BstMWI	GCNNNNNNNGC	4 cut(s)	227, 269, 278, 367
BstNSI	RCATGY	1 cut(s)	296
BstV1I	GCAGC	6 cut(s)	205, 217, 220, 268, 281, 330
Cac8I	GCNNGC	1 cut(s)	363
CaiI	CAGNNNCTG	1 cut(s)	233
CseI	GACGC	1 cut(s)	436
CviAII	CATG	2 cut(s)	293, 349
DdeI	CTNAG	2 cut(s)	264, 384
DrdI	GACNNNNNNGTC	1 cut(s)	61
DseDI	GACNNNNNNGTC	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Ecl136II	GAGCTC	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	318
Eco53kI	GAGCTC	1 cut(s)	316
Eco88I	CYCGRG	1 cut(s)	317
EcoICRI	GAGCTC	1 cut(s)	316
EcoNI	CCTNNNNNAGG	1 cut(s)	101
EcoT38I	GRGCYC	1 cut(s)	318
FaeI	CATG	2 cut(s)	296, 352
FaiI	YATR	5 cut(s)	44, 294, 350, 419, 471
FalI	AAGNNNNNCTT	4 cut(s)	95, 127, 129, 161
FatI	CATG	2 cut(s)	292, 348
FauI	CCCGC	1 cut(s)	354
Fnu4HI	GCNGC	6 cut(s)	219, 231, 234, 270, 282, 344
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	6 cut(s)	219, 231, 234, 270, 282, 344
GluI	GCNGC	6 cut(s)	219, 231, 234, 270, 282, 344
GsuI	CTGGAG	1 cut(s)	68
HgaI	GACGC	1 cut(s)	436
Hin1II	CATG	2 cut(s)	296, 352
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	2 cut(s)	77, 443
HphI	GGTGA	1 cut(s)	490
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	4 cut(s)	54, 154, 250, 426
Hpy188III	TCNNGA	4 cut(s)	85, 179, 319, 453
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	1 cut(s)	76
HpyCH4V	TGCA	3 cut(s)	296, 346, 475
HpyF10VI	GCNNNNNNNGC	4 cut(s)	227, 269, 278, 367
HpyF3I	CTNAG	2 cut(s)	264, 384
Hsp92II	CATG	2 cut(s)	296, 352
LmnI	GCTCC	1 cut(s)	38
LpnPI	CCDG	3 cut(s)	98, 245, 284
Lsp1109I	GCAGC	6 cut(s)	205, 217, 220, 268, 281, 330
LweI	GCATC	1 cut(s)	205
MaeIII	GTNAC	2 cut(s)	78, 304
MboII	GAAGA	3 cut(s)	134, 365, 386
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	3 cut(s)	70, 287, 420
MlyI	GAGTC	2 cut(s)	86, 452
MnlI	CCTC	4 cut(s)	107, 151, 259, 337
MspA1I	CMGCKG	1 cut(s)	230
Mva1269I	GAATGC	1 cut(s)	448
MwoI	GCNNNNNNNGC	4 cut(s)	227, 269, 278, 367
NlaIII	CATG	2 cut(s)	296, 352
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	78
NspI	RCATGY	1 cut(s)	296
PaeR7I	CTCGAG	1 cut(s)	317
PctI	GAATGC	1 cut(s)	448
PkrI	GCNGC	6 cut(s)	220, 232, 235, 271, 283, 345
PleI	GAGTC	2 cut(s)	85, 451
PpsI	GAGTC	2 cut(s)	85, 451
Psp124BI	GAGCTC	1 cut(s)	318
PspN4I	GGNNCC	1 cut(s)	40
PstNI	CAGNNNCTG	1 cut(s)	233
PvuII	CAGCTG	1 cut(s)	230
SacI	GAGCTC	1 cut(s)	318
SatI	GCNGC	6 cut(s)	219, 231, 234, 270, 282, 344
SchI	GAGTC	2 cut(s)	86, 452
SduI	GDGCHC	1 cut(s)	318
SfaNI	GCATC	1 cut(s)	205
Sfr274I	CTCGAG	1 cut(s)	317
SlaI	CTCGAG	1 cut(s)	317
SmlI	CTYRAG	2 cut(s)	179, 317
SmoI	CTYRAG	2 cut(s)	179, 317
Sse9I	AATT	3 cut(s)	70, 287, 420
SsiI	CCGC	1 cut(s)	361
SstI	GAGCTC	1 cut(s)	318
TaqI	TCGA	2 cut(s)	318, 452
TasI	AATT	3 cut(s)	70, 287, 420
TseFI	GTSAC	1 cut(s)	78
TseI	GCWGC	6 cut(s)	218, 230, 233, 269, 281, 343
Tsp45I	GTSAC	1 cut(s)	78
TspGWI	ACGGA	1 cut(s)	51
XagI	CCTNNNNNAGG	1 cut(s)	101
XceI	RCATGY	1 cut(s)	296
XhoI	CTCGAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.