Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0010306

Physical Location & Seq

Genomic Coordinates Forward (+)

20334531 .. 20335004

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1096800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGAGGACAAGGGCAAAGGAAGCGAAAGATGGAACGGAGCCATAGGCAATTTGACAGAAATGGCTTTCAATTTGGAGTCACTCCAGAAGCTACTTCTTAAAAAGGCTGTCTTTGTTGAAGAAGAGACCTTTGCCAAAGCCTCACTTTGTTCCGAACAAGCTCGAACCATCAAGGTTCTTGAACAAAGGGTAGAAACTTTGGAAGGAGAACTTGATGCTGCCATTACAGCTGCTGCTCGTGCTCGGGCAGAAAAACGACAGGCTGGGGCAGCAGAAAAGGCTGCTGAGTTGCATGCGCAAGAAGTTACAAAAGAGCTCGAGAACACCTCAAAGGTATTTGAGCTGCACATGGAAGAGTTGCGTGCCAAACAAGAAGAGATCGCCAAGCAGCGTGATAAGAAATCAAAACTTTTGGAAGCTATAATTCAGACACTTGGGGGAAAAGAATCGTCCTCGCATTCAAAAAGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

17.45

Weight (kDa)

6.36

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64180 AT5G64180
fragaria_vesca	FvH4_1g26050
malus_domestica	MD00G1096800.v1.1 MD05G1163000.v1.1 MD05G1163200.v1.1 MD10G1152800.v1.1
prunus_persica	Prupe.8G061800_v2.0.a1 Prupe.8G061800_v2.0.a1
pyrus_communis	pycom05g15270 pycom10g13190
rosa_chinensis	RchiOBHm_Chr3g0485521
rosa_laevigata	RLG00000023146
rosa_multiflora	Rmu_sc0001272.1_g000017
rosa_roxburghii	Rroxscaffold_6G00396680 Rroxscaffold_6G00396960
rosa_rugosa	Rorug03G0219500 Rorug03G0219600 Rorug03G0219700
rosa_samantha	Rh3BG303900
rosa_wichuraiana	Rw3G023920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	297
AgsI	TTSAA	4 cut(s)	70, 119, 182, 462
AluBI	AGCT	7 cut(s)	91, 161, 230, 316, 343, 419, 471
AluI	AGCT	7 cut(s)	91, 161, 230, 316, 343, 419, 471
Alw21I	GWGCWC	2 cut(s)	244, 318
Alw26I	GTCTC	1 cut(s)	119
AlwNI	CAGNNNCTG	1 cut(s)	233
Ama87I	CYCGRG	2 cut(s)	243, 317
ApeKI	GCWGC	7 cut(s)	218, 230, 233, 269, 281, 343, 388
AspLEI	GCGC	1 cut(s)	298
AvaI	CYCGRG	2 cut(s)	243, 317
BanII	GRGCYC	1 cut(s)	318
BauI	CACGAG	1 cut(s)	237
Bbv12I	GWGCWC	2 cut(s)	244, 318
BbvI	GCAGC	7 cut(s)	205, 217, 220, 268, 281, 330, 400
BccI	CCATC	2 cut(s)	24, 176
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	1 cut(s)	472
BisI	GCNGC	7 cut(s)	219, 231, 234, 270, 282, 344, 389
BlsI	GCNGC	7 cut(s)	220, 232, 235, 271, 283, 345, 390
BmeT110I	CYCGRG	2 cut(s)	243, 317
BmiI	GGNNCC	1 cut(s)	40
BmsI	GCATC	1 cut(s)	205
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
BpmI	CTGGAG	1 cut(s)	68
BsaI	GGTCTC	1 cut(s)	119
BseMII	CTCAG	1 cut(s)	276
BseXI	GCAGC	7 cut(s)	205, 217, 220, 268, 281, 330, 400
BseYI	CCCAGC	1 cut(s)	263
BsgI	GTGCAG	1 cut(s)	329
BsiHKAI	GWGCWC	2 cut(s)	244, 318
BsiHKCI	CYCGRG	2 cut(s)	243, 317
BsmAI	GTCTC	1 cut(s)	119
BsmI	GAATGC	1 cut(s)	457
Bso31I	GGTCTC	1 cut(s)	119
BsoBI	CYCGRG	2 cut(s)	243, 317
Bsp1286I	GDGCHC	2 cut(s)	244, 318
Bsp143I	GATC	1 cut(s)	378
BspCNI	CTCAG	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	40
BspTNI	GGTCTC	1 cut(s)	119
BssMI	GATC	1 cut(s)	378
BssSI	CACGAG	1 cut(s)	237
Bst2BI	CACGAG	1 cut(s)	237
Bst6I	CTCTTC	3 cut(s)	117, 348, 369
BstC8I	GCNNGC	2 cut(s)	294, 363
BstDEI	CTNAG	1 cut(s)	285
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	1 cut(s)	381
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	1 cut(s)	378
BstMWI	GCNNNNNNNGC	5 cut(s)	21, 227, 239, 269, 278
BstNSI	RCATGY	1 cut(s)	296
BstV1I	GCAGC	7 cut(s)	205, 217, 220, 268, 281, 330, 400
Cac8I	GCNNGC	2 cut(s)	294, 363
CaiI	CAGNNNCTG	1 cut(s)	233
CfoI	GCGC	1 cut(s)	298
CviAII	CATG	2 cut(s)	293, 349
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	1 cut(s)	380
DpnII	GATC	1 cut(s)	378
Eam1104I	CTCTTC	3 cut(s)	117, 348, 369
EarI	CTCTTC	3 cut(s)	117, 348, 369
Ecl136II	GAGCTC	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	318
Eco31I	GGTCTC	1 cut(s)	119
Eco53kI	GAGCTC	1 cut(s)	316
Eco88I	CYCGRG	2 cut(s)	243, 317
EcoICRI	GAGCTC	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	318
FaeI	CATG	2 cut(s)	296, 352
FaiI	YATR	4 cut(s)	44, 294, 350, 422
FalI	AAGNNNNNCTT	6 cut(s)	95, 127, 129, 161, 195, 227
FatI	CATG	2 cut(s)	292, 348
Fnu4HI	GCNGC	7 cut(s)	219, 231, 234, 270, 282, 344, 389
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	7 cut(s)	219, 231, 234, 270, 282, 344, 389
FspBI	CTAG	1 cut(s)	472
FspI	TGCGCA	1 cut(s)	297
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	7 cut(s)	219, 231, 234, 270, 282, 344, 389
GsaI	CCCAGC	1 cut(s)	267
GsuI	CTGGAG	1 cut(s)	68
HhaI	GCGC	1 cut(s)	298
Hin1II	CATG	2 cut(s)	296, 352
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HinfI	GANTC	2 cut(s)	77, 446
Hpy188I	TCNGA	2 cut(s)	154, 429
Hpy188III	TCNNGA	3 cut(s)	85, 179, 319
HpyAV	CCTTC	1 cut(s)	197
HpyCH4V	TGCA	2 cut(s)	292, 346
HpyF10VI	GCNNNNNNNGC	5 cut(s)	21, 227, 239, 269, 278
HpyF3I	CTNAG	1 cut(s)	285
Hsp92II	CATG	2 cut(s)	296, 352
HspAI	GCGC	1 cut(s)	296
Kzo9I	GATC	1 cut(s)	378
LmnI	GCTCC	1 cut(s)	38
LpnPI	CCDG	3 cut(s)	98, 245, 249
Lsp1109I	GCAGC	7 cut(s)	205, 217, 220, 268, 281, 330, 400
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	472
MaeIII	GTNAC	2 cut(s)	78, 304
MalI	GATC	1 cut(s)	380
MboI	GATC	1 cut(s)	378
MboII	GAAGA	4 cut(s)	131, 134, 365, 386
MhlI	GDGCHC	2 cut(s)	244, 318
MluCI	AATT	3 cut(s)	49, 70, 423
MlyI	GAGTC	1 cut(s)	86
MnlI	CCTC	3 cut(s)	151, 337, 463
MseI	TTAA	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	230
Mva1269I	GAATGC	1 cut(s)	457
MwoI	GCNNNNNNNGC	5 cut(s)	21, 227, 239, 269, 278
NdeII	GATC	1 cut(s)	378
NlaIII	CATG	2 cut(s)	296, 352
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	78
NsbI	TGCGCA	1 cut(s)	297
NspI	RCATGY	1 cut(s)	296
PaeI	GCATGC	1 cut(s)	296
PaeR7I	CTCGAG	1 cut(s)	317
PctI	GAATGC	1 cut(s)	457
PfeI	GAWTC	1 cut(s)	446
PkrI	GCNGC	7 cut(s)	220, 232, 235, 271, 283, 345, 390
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
Psp124BI	GAGCTC	1 cut(s)	318
PspFI	CCCAGC	1 cut(s)	263
PspN4I	GGNNCC	1 cut(s)	40
PstNI	CAGNNNCTG	1 cut(s)	233
PvuII	CAGCTG	1 cut(s)	230
SacI	GAGCTC	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	7 cut(s)	219, 231, 234, 270, 282, 344, 389
Sau3AI	GATC	1 cut(s)	378
SchI	GAGTC	1 cut(s)	86
SduI	GDGCHC	2 cut(s)	244, 318
SfaNI	GCATC	1 cut(s)	205
Sfr274I	CTCGAG	1 cut(s)	317
SlaI	CTCGAG	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
SphI	GCATGC	1 cut(s)	296
Sse9I	AATT	3 cut(s)	49, 70, 423
SspMI	CTAG	1 cut(s)	472
SstI	GAGCTC	1 cut(s)	318
TaqI	TCGA	2 cut(s)	163, 318
TasI	AATT	3 cut(s)	49, 70, 423
TfiI	GAWTC	1 cut(s)	446
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TseFI	GTSAC	1 cut(s)	78
TseI	GCWGC	7 cut(s)	218, 230, 233, 269, 281, 343, 388
Tsp45I	GTSAC	1 cut(s)	78
TspGWI	ACGGA	1 cut(s)	51
XceI	RCATGY	1 cut(s)	296
XhoI	CTCGAG	1 cut(s)	317
XspI	CTAG	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.