AT5G64620

cell wall vacuolar inhibitor of fructosidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012178
Physical Location & Seq
Forward (+)
25831635 .. 25832731
1097 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G64620.1

Sequence Viewer

Length: 543 bp
ATGGCTTCTTCTCTCATCTTCCTCCTCCTCGTTACCCTAACCTTTTCAGCATCAACCCTAATCTCAGCCAAATCCAACACAACAACAATAATCGAATCAACTTGCAAAACCACAAACTACTACAAATTCTGCGTCTCAGCTCTCAAATCCGACCCAAGAAGTCCCACAGCCGACACAAAAGGTCTCGCCTCCATTATGGTCGGCGTTGGTATGACAAACGCCACCTCCACCGCAAATTACATCGCTGGAAACCTATCCGCCACCGTAAAAGACACCGTTCTCAAAAAGGTCTTACAAGATTGCTCCGAGAAGTATGCTCTCGCCGCTGATTCTCTCCGGCTGACGATTCAAGATCTTGATGATGAAGCTTATGACTATGCCTCCATGCATGTGTTGGCGGCGCAGGATTATCCTAATGTTTGCCGGAATATTTTTAGGCGGGTTAAAGGGTTGGCTTATCCGGTGGAGATTCGCCGGCGTGAAGCTAGTCTGAGACGTATTTGTGGTGTTGTCTCCGGGATTCTTGATCGCCTTGTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0004857 GO:0008150 GO:0009628 GO:0030234 GO:0043086 GO:0044092 GO:0046910 GO:0050790 GO:0050896 GO:0065007 GO:0065009 GO:0080167 GO:0098772
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

180

Amino Acids

19.63

Weight (kDa)

8.8

Isoelectric Point (pI)

47.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 30 - 168 1.5e-24 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64620
fragaria_vesca FvH4_1g24160
malus_domestica MD01G1038300.v1.1 MD15G1314600.v1.1
prunus_persica Prupe.6G197400_v2.0.a1
pyrus_communis pycom01g06630 pycom15g27810
rosa_chinensis RchiOBHm_Chr2g0120401
rosa_laevigata RLG00000018555
rosa_multiflora Rmu_co8012200.1_g000001 Rmu_sc0007380.1_g000001 Rmu_sc0007503.1_g000005
rosa_roxburghii Rroxscaffold_2G00123440
rosa_rugosa Rorug02G0229400
rosa_samantha Rh2AG285300 Rh2BG296400 Rh2CG274100 Rh2DG310300
rosa_wichuraiana Rw2G022900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 231, 258, 324, 398, 439
AcsI RAATTY 1 cut(s) 125
AgsI TTSAA 2 cut(s) 350, 539
AluBI AGCT 3 cut(s) 140, 368, 485
AluI AGCT 3 cut(s) 140, 368, 485
Alw26I GTCTC 4 cut(s) 139, 188, 487, 517
ApoI RAATTY 1 cut(s) 125
ArsI GACNNNNNNTTYG 2 cut(s) 117, 149
AspLEI GCGC 1 cut(s) 403
AsuC2I CCSGG 1 cut(s) 517
BcgI CGANNNNNNTGC 2 cut(s) 296, 330
BcnI CCSGG 1 cut(s) 517
BcoDI GTCTC 4 cut(s) 139, 188, 487, 517
BfaI CTAG 1 cut(s) 486
BglII AGATCT 1 cut(s) 352
BisI GCNGC 2 cut(s) 324, 399
BlsI GCNGC 2 cut(s) 325, 400
Bme1390I CCNGG 1 cut(s) 517
BmrFI CCNGG 1 cut(s) 517
BmsI GCATC 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 517
BsaI GGTCTC 1 cut(s) 188
BsaWI WCCGGW 1 cut(s) 460
BsaXI ACNNNNNCTCC 4 cut(s) 209, 239, 365, 395
Bse118I RCCGGY 1 cut(s) 474
BseMII CTCAG 3 cut(s) 78, 150, 482
BseRI GAGGAG 2 cut(s) 14, 17
BsiSI CCGG 5 cut(s) 337, 424, 461, 475, 516
BslFI GGGAC 1 cut(s) 147
BsmAI GTCTC 4 cut(s) 139, 188, 487, 517
BsmBI CGTCTC 2 cut(s) 139, 487
BsmFI GGGAC 1 cut(s) 147
Bso31I GGTCTC 1 cut(s) 188
Bsp143I GATC 2 cut(s) 352, 526
BspACI CCGC 5 cut(s) 231, 258, 324, 398, 439
BspCNI CTCAG 3 cut(s) 77, 149, 483
BspTNI GGTCTC 1 cut(s) 188
BsrFI RCCGGY 1 cut(s) 474
BssAI RCCGGY 1 cut(s) 474
BssMI GATC 2 cut(s) 352, 526
Bst4CI ACNGT 2 cut(s) 265, 277
BstC8I GCNNGC 1 cut(s) 476
BstDEI CTNAG 3 cut(s) 64, 136, 491
BstHHI GCGC 1 cut(s) 403
BstKTI GATC 2 cut(s) 355, 529
BstMAI GTCTC 4 cut(s) 139, 188, 487, 517
BstMBI GATC 2 cut(s) 352, 526
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNSI RCATGY 1 cut(s) 392
BstSCI CCNGG 1 cut(s) 515
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
BtgZI GCGATG 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 476
CfoI GCGC 1 cut(s) 403
Cfr10I RCCGGY 1 cut(s) 474
CseI GACGC 1 cut(s) 121
CviAII CATG 2 cut(s) 385, 389
CviJI RGCY 8 cut(s) 5, 68, 140, 170, 340, 368, 455, 485
CviKI_1 RGCY 8 cut(s) 5, 68, 140, 170, 340, 368, 455, 485
DdeI CTNAG 3 cut(s) 64, 136, 491
DpnI GATC 2 cut(s) 354, 528
DpnII GATC 2 cut(s) 352, 526
EciI GGCGGA 1 cut(s) 247
Eco31I GGTCTC 1 cut(s) 188
EcoT22I ATGCAT 1 cut(s) 390
Esp3I CGTCTC 2 cut(s) 139, 487
FaeI CATG 2 cut(s) 388, 392
FaiI YATR 7 cut(s) 197, 212, 315, 372, 378, 386, 390
FaqI GGGAC 1 cut(s) 147
FatI CATG 2 cut(s) 384, 388
FauI CCCGC 1 cut(s) 432
Fnu4HI GCNGC 2 cut(s) 324, 399
Fsp4HI GCNGC 2 cut(s) 324, 399
FspBI CTAG 1 cut(s) 486
GlaI GCGC 1 cut(s) 402
GluI GCNGC 2 cut(s) 324, 399
HapII CCGG 5 cut(s) 337, 424, 461, 475, 516
HgaI GACGC 1 cut(s) 121
HhaI GCGC 1 cut(s) 403
Hin1II CATG 2 cut(s) 388, 392
Hin6I GCGC 1 cut(s) 401
HinP1I GCGC 1 cut(s) 401
HindIII AAGCTT 1 cut(s) 366
HinfI GANTC 5 cut(s) 95, 329, 346, 469, 520
HpaII CCGG 5 cut(s) 337, 424, 461, 475, 516
Hpy188I TCNGA 3 cut(s) 151, 307, 492
Hpy188III TCNNGA 3 cut(s) 350, 356, 524
HpyCH4III ACNGT 2 cut(s) 265, 277
HpyCH4IV ACGT 1 cut(s) 496
HpyCH4V TGCA 2 cut(s) 105, 388
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 3 cut(s) 64, 136, 491
HpySE526I ACGT 1 cut(s) 496
Hsp92II CATG 2 cut(s) 388, 392
HspAI GCGC 1 cut(s) 401
KroI GCCGGC 1 cut(s) 474
KroNI GCCGGC 1 cut(s) 476
Kzo9I GATC 2 cut(s) 352, 526
LmnI GCTCC 1 cut(s) 308
LpnPI CCDG 7 cut(s) 231, 350, 389, 437, 474, 488, 529
LweI GCATC 1 cut(s) 59
MaeI CTAG 1 cut(s) 486
MaeII ACGT 1 cut(s) 496
MaeIII GTNAC 1 cut(s) 31
MalI GATC 2 cut(s) 354, 528
MboI GATC 2 cut(s) 352, 526
MboII GAAGA 1 cut(s) 10
MflI RGATCY 1 cut(s) 352
MluCI AATT 2 cut(s) 125, 235
MmeI TCCRAC 2 cut(s) 99, 174
MnlI CCTC 6 cut(s) 32, 35, 38, 199, 235, 391
Mph1103I ATGCAT 1 cut(s) 390
MreI CGCCGGCG 1 cut(s) 474
MroNI GCCGGC 1 cut(s) 474
MseI TTAA 1 cut(s) 444
MslI CAYNNNNRTG 1 cut(s) 389
MspA1I CMGCKG 1 cut(s) 326
MspI CCGG 5 cut(s) 337, 424, 461, 475, 516
MspR9I CCNGG 1 cut(s) 517
MwoI GCNNNNNNNGC 1 cut(s) 323
NaeI GCCGGC 1 cut(s) 476
NciI CCSGG 1 cut(s) 517
NdeII GATC 2 cut(s) 352, 526
NgoMIV GCCGGC 1 cut(s) 474
NlaIII CATG 2 cut(s) 388, 392
NsiI ATGCAT 1 cut(s) 390
NspI RCATGY 1 cut(s) 392
PdiI GCCGGC 1 cut(s) 476
PfeI GAWTC 5 cut(s) 95, 329, 346, 469, 520
PfoI TCCNGGA 1 cut(s) 515
PkrI GCNGC 2 cut(s) 325, 400
PsuI RGATCY 1 cut(s) 352
RseI CAYNNNNRTG 1 cut(s) 389
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 2 cut(s) 324, 399
Sau3AI GATC 2 cut(s) 352, 526
ScrFI CCNGG 1 cut(s) 517
SetI ASST 9 cut(s) 44, 142, 184, 227, 255, 291, 370, 487, 499
SfaNI GCATC 1 cut(s) 59
SgrAI CRCCGGYG 1 cut(s) 474
SmiMI CAYNNNNRTG 1 cut(s) 389
Sse9I AATT 2 cut(s) 125, 235
SsiI CCGC 5 cut(s) 231, 258, 324, 398, 439
SspI AATATT 1 cut(s) 430
SspMI CTAG 1 cut(s) 486
StyD4I CCNGG 1 cut(s) 515
TaaI ACNGT 2 cut(s) 265, 277
TaiI ACGT 1 cut(s) 499
TaqI TCGA 1 cut(s) 93
TasI AATT 2 cut(s) 125, 235
TauI GCSGC 2 cut(s) 326, 401
TfiI GAWTC 5 cut(s) 95, 329, 346, 469, 520
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TspDTI ATGAA 1 cut(s) 378
XapI RAATTY 1 cut(s) 125
XceI RCATGY 1 cut(s) 392
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XspI CTAG 1 cut(s) 486
Zsp2I ATGCAT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.