Rmu_co8012200.1_g000001

Cell wall vacuolar inhibitor of fructosidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8012200.1
OG0012178
Physical Location & Seq
Forward (+)
1 .. 498
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8012200.1_g000001.1.cds

Sequence Viewer

Length: 498 bp
cttctacaacatgatcattttgcgagtgcagactctagcttgatccagaaaacctgcaaagccaccaagtactatgccctttgcatgtcctccctcaagtccgatgccaccagcctaactgcggacggcaagggcttggcggctattattgtcagaattgcgaccaccaatgccaccgcaacctcttcttacttgtcctcccaagtgctcagctctgcaaacgacgccaacgccaagaaggtgttgaaggagtgtgctgacaagtatggctacgccggtgaggccctgcagggttcgctgcaggacctggcggcggagtcttatgactacgcttacatgcacatcactgcagctgccgactaccctaatgcttgccacaatgcgtttagaaggtatccggcgttggcttatccaccggagcttgctagaagagaggatgcgttgaagcggatttgtgatgtggttttgggaattcttgatagtcttggttgggattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0004857 GO:0008150 GO:0009628 GO:0030234 GO:0043086 GO:0044092 GO:0046910 GO:0050790 GO:0050896 GO:0065007 GO:0065009 GO:0080167 GO:0098772
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

165

Amino Acids

17.78

Weight (kDa)

6.08

Isoelectric Point (pI)

64.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64620
fragaria_vesca FvH4_1g24160
malus_domestica MD01G1038300.v1.1 MD15G1314600.v1.1
prunus_persica Prupe.6G197400_v2.0.a1
pyrus_communis pycom01g06630 pycom15g27810
rosa_chinensis RchiOBHm_Chr2g0120401
rosa_laevigata RLG00000018555
rosa_multiflora Rmu_co8012200.1_g000001 Rmu_sc0007380.1_g000001 Rmu_sc0007503.1_g000005
rosa_roxburghii Rroxscaffold_2G00123440
rosa_rugosa Rorug02G0229400
rosa_samantha Rh2AG285300 Rh2BG296400 Rh2CG274100 Rh2DG310300
rosa_wichuraiana Rw2G022900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 62
AciI CCGC 6 cut(s) 122, 140, 177, 311, 314, 448
AclWI GGATC 1 cut(s) 37
AcsI RAATTY 1 cut(s) 471
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 1 cut(s) 71
AfiI CCNNNNNNNGG 2 cut(s) 121, 313
AgsI TTSAA 2 cut(s) 247, 445
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 4 cut(s) 39, 213, 353, 421
AluI AGCT 4 cut(s) 39, 213, 353, 421
Alw21I GWGCWC 1 cut(s) 210
AlwI GGATC 1 cut(s) 37
AlwNI CAGNNNCTG 1 cut(s) 307
AoxI GGCC 1 cut(s) 282
ApeKI GCWGC 3 cut(s) 298, 350, 353
ApoI RAATTY 1 cut(s) 471
AspS9I GGNCC 2 cut(s) 283, 304
AsuHPI GGTGA 1 cut(s) 290
AvaII GGWCC 1 cut(s) 304
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 3 cut(s) 285, 340, 362
BceAI ACGGC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 308
BciVI GTATCC 1 cut(s) 405
BclI TGATCA 1 cut(s) 13
BfaI CTAG 2 cut(s) 36, 426
BfmI CTRYAG 3 cut(s) 287, 299, 348
BfuAI ACCTGC 1 cut(s) 62
BfuI GTATCC 1 cut(s) 405
BglI GCCNNNNNGGC 1 cut(s) 281
BisI GCNGC 5 cut(s) 141, 299, 312, 351, 354
BlpI GCTNAGC 1 cut(s) 209
BlsI GCNGC 5 cut(s) 142, 300, 313, 352, 355
BmcAI AGTACT 1 cut(s) 71
Bme1390I CCNGG 1 cut(s) 308
Bme18I GGWCC 1 cut(s) 304
BmgT120I GGNCC 2 cut(s) 283, 304
BmrFI CCNGG 1 cut(s) 308
BmsI GCATC 2 cut(s) 94, 427
Bpu1102I GCTNAGC 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 80
BsaHI GRCGYC 1 cut(s) 225
BsaWI WCCGGW 1 cut(s) 415
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 313
Bse118I RCCGGY 1 cut(s) 275
BseBI CCWGG 1 cut(s) 308
BseGI GGATG 1 cut(s) 442
BseLI CCNNNNNNNGG 2 cut(s) 121, 313
BseMII CTCAG 1 cut(s) 223
BseXI GCAGC 3 cut(s) 285, 340, 362
BsgI GTGCAG 1 cut(s) 48
BshFI GGCC 1 cut(s) 284
BsiHKAI GWGCWC 1 cut(s) 210
BsiSI CCGG 3 cut(s) 276, 398, 416
BslI CCNNNNNNNGG 2 cut(s) 121, 313
BsnI GGCC 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 2 cut(s) 13, 42
Bsp1720I GCTNAGC 1 cut(s) 209
BspACI CCGC 6 cut(s) 122, 140, 177, 311, 314, 448
BspANI GGCC 1 cut(s) 284
BspCNI CTCAG 1 cut(s) 222
BspMAI CTGCAG 3 cut(s) 291, 303, 352
BspMI ACCTGC 1 cut(s) 62
BspPI GGATC 1 cut(s) 37
BsrFI RCCGGY 1 cut(s) 275
BssAI RCCGGY 1 cut(s) 275
BssMI GATC 2 cut(s) 13, 42
BssNI GRCGYC 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 308
Bst6I CTCTTC 2 cut(s) 190, 424
BstACI GRCGYC 1 cut(s) 225
BstC8I GCNNGC 2 cut(s) 373, 423
BstDEI CTNAG 1 cut(s) 209
BstF5I GGATG 1 cut(s) 442
BstKTI GATC 2 cut(s) 16, 45
BstMBI GATC 2 cut(s) 13, 42
BstMWI GCNNNNNNNGC 3 cut(s) 224, 281, 295
BstNI CCWGG 1 cut(s) 308
BstNSI RCATGY 2 cut(s) 88, 340
BstSCI CCNGG 1 cut(s) 306
BstSFI CTRYAG 3 cut(s) 287, 299, 348
BstV1I GCAGC 3 cut(s) 285, 340, 362
BsuI GTATCC 1 cut(s) 405
BsuRI GGCC 1 cut(s) 284
BtsCI GGATG 1 cut(s) 442
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 1 cut(s) 345
BveI ACCTGC 1 cut(s) 62
Cac8I GCNNGC 2 cut(s) 373, 423
CaiI CAGNNNCTG 1 cut(s) 307
Cfr10I RCCGGY 1 cut(s) 275
Cfr13I GGNCC 2 cut(s) 283, 304
CseI GACGC 1 cut(s) 233
Csp6I GTAC 1 cut(s) 70
CviAII CATG 3 cut(s) 11, 85, 337
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 1 cut(s) 209
DpnI GATC 2 cut(s) 15, 44
DpnII GATC 2 cut(s) 13, 42
Eam1104I CTCTTC 2 cut(s) 190, 424
EarI CTCTTC 2 cut(s) 190, 424
EciI GGCGGA 1 cut(s) 329
Eco47I GGWCC 1 cut(s) 304
EcoO109I RGGNCCY 2 cut(s) 283, 304
EcoRI GAATTC 1 cut(s) 471
EcoRII CCWGG 1 cut(s) 306
FaeI CATG 3 cut(s) 14, 88, 340
FaiI YATR 6 cut(s) 12, 75, 86, 267, 324, 338
FatI CATG 3 cut(s) 10, 84, 336
FbaI TGATCA 1 cut(s) 13
Fnu4HI GCNGC 5 cut(s) 141, 299, 312, 351, 354
FokI GGATG 1 cut(s) 449
Fsp4HI GCNGC 5 cut(s) 141, 299, 312, 351, 354
FspBI CTAG 2 cut(s) 36, 426
GluI GCNGC 5 cut(s) 141, 299, 312, 351, 354
HaeIII GGCC 1 cut(s) 284
HapII CCGG 3 cut(s) 276, 398, 416
HgaI GACGC 1 cut(s) 233
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 3 cut(s) 14, 88, 340
HinfI GANTC 2 cut(s) 32, 317
HpaII CCGG 3 cut(s) 276, 398, 416
HphI GGTGA 1 cut(s) 290
Hpy188I TCNGA 2 cut(s) 103, 155
Hpy188III TCNNGA 2 cut(s) 46, 476
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 3 cut(s) 232, 241, 384
HpyCH4V TGCA 8 cut(s) 29, 57, 84, 218, 289, 301, 340, 350
HpyF10VI GCNNNNNNNGC 3 cut(s) 224, 281, 295
HpyF3I CTNAG 1 cut(s) 209
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 3 cut(s) 14, 88, 340
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 2 cut(s) 13, 42
LmnI GCTCC 1 cut(s) 418
Lsp1109I GCAGC 3 cut(s) 285, 340, 362
LweI GCATC 2 cut(s) 94, 427
MaeI CTAG 2 cut(s) 36, 426
MalI GATC 2 cut(s) 15, 44
MboI GATC 2 cut(s) 13, 42
MboII GAAGA 2 cut(s) 177, 441
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 2 cut(s) 156, 471
MlyI GAGTC 2 cut(s) 26, 326
MnlI CCTC 6 cut(s) 100, 104, 193, 208, 274, 427
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 3 cut(s) 276, 398, 416
MspR9I CCNGG 1 cut(s) 308
MvaI CCWGG 1 cut(s) 308
MwoI GCNNNNNNNGC 3 cut(s) 224, 281, 295
NdeII GATC 2 cut(s) 13, 42
NlaIII CATG 3 cut(s) 14, 88, 340
NspI RCATGY 2 cut(s) 88, 340
PkrI GCNGC 5 cut(s) 142, 300, 313, 352, 355
PleI GAGTC 2 cut(s) 26, 325
PpsI GAGTC 2 cut(s) 26, 325
PpuMI RGGWCCY 1 cut(s) 304
Psp5II RGGWCCY 1 cut(s) 304
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspPI GGNCC 2 cut(s) 283, 304
PspPPI RGGWCCY 1 cut(s) 304
PstI CTGCAG 3 cut(s) 291, 303, 352
PstNI CAGNNNCTG 1 cut(s) 307
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
SatI GCNGC 5 cut(s) 141, 299, 312, 351, 354
Sau3AI GATC 2 cut(s) 13, 42
Sau96I GGNCC 2 cut(s) 283, 304
SbfI CCTGCAGG 1 cut(s) 291
ScaI AGTACT 1 cut(s) 71
SchI GAGTC 2 cut(s) 26, 326
ScrFI CCNGG 1 cut(s) 308
SdaI CCTGCAGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 210
SetI ASST 9 cut(s) 41, 56, 185, 215, 243, 309, 355, 395, 423
SfaNI GCATC 2 cut(s) 94, 427
SfcI CTRYAG 3 cut(s) 287, 299, 348
SgrAI CRCCGGYG 1 cut(s) 275
SinI GGWCC 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse8387I CCTGCAGG 1 cut(s) 291
Sse9I AATT 2 cut(s) 156, 471
SsiI CCGC 6 cut(s) 122, 140, 177, 311, 314, 448
SspMI CTAG 2 cut(s) 36, 426
StyD4I CCNGG 1 cut(s) 306
TasI AATT 2 cut(s) 156, 471
TatI WGTACW 1 cut(s) 69
TauI GCSGC 2 cut(s) 143, 314
TscAI CASTG 1 cut(s) 352
TseI GCWGC 3 cut(s) 298, 350, 353
TspRI CASTG 1 cut(s) 352
VpaK11BI GGWCC 1 cut(s) 304
XapI RAATTY 1 cut(s) 471
XceI RCATGY 2 cut(s) 88, 340
XspI CTAG 2 cut(s) 36, 426
ZrmI AGTACT 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.