Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0012178

Physical Location & Seq

Genomic Coordinates Forward (+)

20457399 .. 20457958

Gene Structure 560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G197400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGGTTCTATTATTTTCTCTCTCTTTCTTCTTTCCCTTGCATTTCCTCACCAAACACATAATTTCTTTGTGACTGCTGACTCAAATTTGATCCAGAAAACTTGTAAGAACACCAAATACTATGGCCTCTGTGTCTCAACCCTCAAATCTGATCCCACAAGTAAAACTGCAGACACAAAGGGATTGGCAGTTATTATGGTTGGGATTGGGATGGCAAATGCAACTGCCACCTCATCTTACTTGTCCTCTCAACTGGTGAGCTCAAGGAACAATGACACAAACATGAAGAAGGTGCTCAAGGAGTGTGCTGATAAGTATGGCTTTGCTGGAGATGCCCTCCAAGCTTCAGTGAAGGATTTGGCCTCAGAGTCTTATGATTATGCTTCCATGCACATCAATGCAGCTGCTGACTACCCCAATGCTTGCCACAATGCCTTCAAAAGGTACCCAGCTCTGGCTTATCCTCCAGAACTTGCAAGAAGAGAGGAGGGTTTGAAGCATATTTGTGATGTGGCTTTGGGAATTATTGATAATTTTGGTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0008150 GO:0009628 GO:0030234 GO:0043086 GO:0044092 GO:0046910 GO:0050790 GO:0050896 GO:0065007 GO:0065009 GO:0080167 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

182

Amino Acids

19.72

Weight (kDa)

7.64

Isoelectric Point (pI)

42.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64620
fragaria_vesca	FvH4_1g24160
malus_domestica	MD01G1038300.v1.1 MD15G1314600.v1.1
prunus_persica	Prupe.6G197400_v2.0.a1
pyrus_communis	pycom01g06630 pycom15g27810
rosa_chinensis	RchiOBHm_Chr2g0120401
rosa_laevigata	RLG00000018555
rosa_multiflora	Rmu_co8012200.1_g000001 Rmu_sc0007380.1_g000001 Rmu_sc0007503.1_g000005
rosa_roxburghii	Rroxscaffold_2G00123440
rosa_rugosa	Rorug02G0229400
rosa_samantha	Rh2AG285300 Rh2BG296400 Rh2CG274100 Rh2DG310300
rosa_wichuraiana	Rw2G022900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	444
AccB1I	GGYRCC	1 cut(s)	444
AclWI	GGATC	2 cut(s)	85, 146
AcsI	RAATTY	1 cut(s)	85
AcuI	CTGAAG	1 cut(s)	330
AfaI	GTAC	1 cut(s)	446
AfiI	CCNNNNNNNGG	2 cut(s)	441, 454
AgsI	TTSAA	2 cut(s)	439, 496
AluBI	AGCT	4 cut(s)	261, 344, 404, 452
AluI	AGCT	4 cut(s)	261, 344, 404, 452
Alw21I	GWGCWC	2 cut(s)	263, 297
Alw26I	GTCTC	1 cut(s)	139
AlwI	GGATC	2 cut(s)	85, 146
AlwNI	CAGNNNCTG	1 cut(s)	407
AoxI	GGCC	2 cut(s)	124, 360
ApeKI	GCWGC	2 cut(s)	401, 404
ApoI	RAATTY	1 cut(s)	85
Asp718I	GGTACC	1 cut(s)	444
AsuHPI	GGTGA	2 cut(s)	41, 268
BanI	GGYRCC	1 cut(s)	444
BanII	GRGCYC	1 cut(s)	263
Bbv12I	GWGCWC	2 cut(s)	263, 297
BbvI	GCAGC	2 cut(s)	391, 413
BccI	CCATC	1 cut(s)	205
BcoDI	GTCTC	1 cut(s)	139
BfmI	CTRYAG	1 cut(s)	168
BisI	GCNGC	2 cut(s)	402, 405
BlsI	GCNGC	2 cut(s)	403, 406
BmiI	GGNNCC	1 cut(s)	446
BmsI	GCATC	1 cut(s)	322
BplI	GAGNNNNNCTC	2 cut(s)	321, 353
BpmI	CTGGAG	2 cut(s)	348, 450
BpuEI	CTTGAG	2 cut(s)	247, 281
Bsc4I	CCNNNNNNNGG	2 cut(s)	441, 454
Bse1I	ACTGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	216
BseLI	CCNNNNNNNGG	2 cut(s)	441, 454
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	1 cut(s)	258
BseRI	GAGGAG	1 cut(s)	500
BseXI	GCAGC	2 cut(s)	391, 413
BseYI	CCCAGC	1 cut(s)	448
BshFI	GGCC	2 cut(s)	126, 362
BshNI	GGYRCC	1 cut(s)	444
BsiHKAI	GWGCWC	2 cut(s)	263, 297
BslI	CCNNNNNNNGG	2 cut(s)	441, 454
BsmAI	GTCTC	1 cut(s)	139
BsnI	GGCC	2 cut(s)	126, 362
Bsp1286I	GDGCHC	2 cut(s)	263, 297
Bsp143I	GATC	2 cut(s)	90, 151
BspANI	GGCC	2 cut(s)	126, 362
BspCNI	CTCAG	1 cut(s)	377
BspLI	GGNNCC	1 cut(s)	446
BspMAI	CTGCAG	1 cut(s)	172
BspPI	GGATC	2 cut(s)	85, 146
BspT107I	GGYRCC	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	258
BssMI	GATC	2 cut(s)	90, 151
Bst6I	CTCTTC	1 cut(s)	475
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	1 cut(s)	364
BstENI	CCTNNNNNAGG	1 cut(s)	439
BstF5I	GGATG	1 cut(s)	216
BstKTI	GATC	2 cut(s)	93, 154
BstMAI	GTCTC	1 cut(s)	139
BstMBI	GATC	2 cut(s)	90, 151
BstMWI	GCNNNNNNNGC	2 cut(s)	332, 341
BstSFI	CTRYAG	1 cut(s)	168
BstV1I	GCAGC	2 cut(s)	391, 413
BsuRI	GGCC	2 cut(s)	126, 362
BtsCI	GGATG	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	424
CaiI	CAGNNNCTG	1 cut(s)	407
Csp6I	GTAC	1 cut(s)	445
CviAII	CATG	2 cut(s)	283, 388
CviJI	RGCY	9 cut(s)	126, 261, 321, 344, 362, 404, 452, 458, 515
CviKI_1	RGCY	9 cut(s)	126, 261, 321, 344, 362, 404, 452, 458, 515
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	1 cut(s)	364
DpnI	GATC	2 cut(s)	92, 153
DpnII	GATC	2 cut(s)	90, 151
Eam1104I	CTCTTC	1 cut(s)	475
EarI	CTCTTC	1 cut(s)	475
Ecl136II	GAGCTC	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	263
Eco53kI	GAGCTC	1 cut(s)	261
Eco57I	CTGAAG	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	261
EcoNI	CCTNNNNNAGG	1 cut(s)	439
EcoT38I	GRGCYC	1 cut(s)	263
FaeI	CATG	2 cut(s)	286, 391
FaiI	YATR	9 cut(s)	60, 123, 197, 284, 318, 375, 381, 389, 501
FalI	AAGNNNNNCTT	2 cut(s)	305, 337
FatI	CATG	2 cut(s)	282, 387
Fnu4HI	GCNGC	2 cut(s)	402, 405
FokI	GGATG	1 cut(s)	223
FriOI	GRGCYC	1 cut(s)	263
Fsp4HI	GCNGC	2 cut(s)	402, 405
GluI	GCNGC	2 cut(s)	402, 405
GsaI	CCCAGC	1 cut(s)	452
GsuI	CTGGAG	2 cut(s)	348, 450
HaeIII	GGCC	2 cut(s)	126, 362
Hin1II	CATG	2 cut(s)	286, 391
HindIII	AAGCTT	1 cut(s)	342
HinfI	GANTC	2 cut(s)	80, 368
HphI	GGTGA	2 cut(s)	41, 268
Hpy188I	TCNGA	2 cut(s)	151, 367
Hpy188III	TCNNGA	2 cut(s)	94, 467
HpyAV	CCTTC	3 cut(s)	283, 346, 445
HpyCH4V	TGCA	6 cut(s)	41, 170, 221, 391, 401, 476
HpyF10VI	GCNNNNNNNGC	2 cut(s)	332, 341
HpyF3I	CTNAG	1 cut(s)	364
Hsp92II	CATG	2 cut(s)	286, 391
KpnI	GGTACC	1 cut(s)	448
Kzo9I	GATC	2 cut(s)	90, 151
LpnPI	CCDG	6 cut(s)	107, 239, 312, 440, 462, 480
Lsp1109I	GCAGC	2 cut(s)	391, 413
LweI	GCATC	1 cut(s)	322
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	2 cut(s)	92, 153
MboI	GATC	2 cut(s)	90, 151
MboII	GAAGA	3 cut(s)	20, 298, 492
MhlI	GDGCHC	2 cut(s)	263, 297
MluCI	AATT	4 cut(s)	61, 85, 522, 532
MlyI	GAGTC	2 cut(s)	74, 377
MslI	CAYNNNNRTG	3 cut(s)	281, 396, 504
MspA1I	CMGCKG	1 cut(s)	404
MwoI	GCNNNNNNNGC	2 cut(s)	332, 341
NdeII	GATC	2 cut(s)	90, 151
NlaIII	CATG	2 cut(s)	286, 391
NlaIV	GGNNCC	1 cut(s)	446
NmuCI	GTSAC	1 cut(s)	70
PkrI	GCNGC	2 cut(s)	403, 406
PleI	GAGTC	2 cut(s)	74, 376
PpsI	GAGTC	2 cut(s)	74, 376
Psp124BI	GAGCTC	1 cut(s)	263
PspFI	CCCAGC	1 cut(s)	448
PspN4I	GGNNCC	1 cut(s)	446
PsrI	GAACNNNNNNTAC	2 cut(s)	101, 133
PstI	CTGCAG	1 cut(s)	172
PstNI	CAGNNNCTG	1 cut(s)	407
PvuII	CAGCTG	1 cut(s)	404
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
RseI	CAYNNNNRTG	3 cut(s)	281, 396, 504
SacI	GAGCTC	1 cut(s)	263
SatI	GCNGC	2 cut(s)	402, 405
Sau3AI	GATC	2 cut(s)	90, 151
SchI	GAGTC	2 cut(s)	74, 377
SduI	GDGCHC	2 cut(s)	263, 297
SetI	ASST	7 cut(s)	233, 263, 294, 346, 406, 446, 454
SfaNI	GCATC	1 cut(s)	322
SfcI	CTRYAG	1 cut(s)	168
SmiMI	CAYNNNNRTG	3 cut(s)	281, 396, 504
SmlI	CTYRAG	2 cut(s)	262, 296
SmoI	CTYRAG	2 cut(s)	262, 296
Sse9I	AATT	4 cut(s)	61, 85, 522, 532
SstI	GAGCTC	1 cut(s)	263
TasI	AATT	4 cut(s)	61, 85, 522, 532
TscAI	CASTG	1 cut(s)	354
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	2 cut(s)	401, 404
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	299
TspRI	CASTG	1 cut(s)	354
XagI	CCTNNNNNAGG	1 cut(s)	439
XapI	RAATTY	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.