Rorug02G0229400

Cell wall vacuolar inhibitor of fructosidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012178
Physical Location & Seq
Forward (+)
22727116 .. 22727439
324 bp
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UTR
Exon/CDS
Intron
Rorug02G0229400.1

Sequence Viewer

Length: 324 bp
ATGATGGGGATTGTTCCTACACGGGCAGCACTCAAATCACGTAAGATTGCCCTGTTTGATTATGGGTGTTTATTTTGTAACAAGGCTGAGGAGACCAGTGTACATGTTTTCAAGAATTGTGATGCGTTGCAATGTTTTTGGCTTTATGGTCCTCTGAAATTAAATGCTCAAGTTCACCCAGCACTTTGCATGAAGTCTTGGATTTTGGACTGGACGTTTTGCATGGTGATAAAATTGATTTCTTTTTTTTGGCACTATGGTTGGTCTGGGGGGAGAGAAACAACGTGCTATGGAAGAATGGCCACTTTAGACCCATGCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0004857 GO:0008150 GO:0009628 GO:0030234 GO:0043086 GO:0044092 GO:0046910 GO:0050790 GO:0050896 GO:0065007 GO:0065009 GO:0080167 GO:0098772
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

107

Amino Acids

12.3

Weight (kDa)

8.67

Isoelectric Point (pI)

36.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 5 - 47 2.9e-06 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64620
fragaria_vesca FvH4_1g24160
malus_domestica MD01G1038300.v1.1 MD15G1314600.v1.1
prunus_persica Prupe.6G197400_v2.0.a1
pyrus_communis pycom01g06630 pycom15g27810
rosa_chinensis RchiOBHm_Chr2g0120401
rosa_laevigata RLG00000018555
rosa_multiflora Rmu_co8012200.1_g000001 Rmu_sc0007380.1_g000001 Rmu_sc0007503.1_g000005
rosa_roxburghii Rroxscaffold_2G00123440
rosa_rugosa Rorug02G0229400
rosa_samantha Rh2AG285300 Rh2BG296400 Rh2CG274100 Rh2DG310300
rosa_wichuraiana Rw2G022900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 300
AfaI GTAC 1 cut(s) 102
AflIII ACRYGT 1 cut(s) 103
AgsI TTSAA 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 86
AoxI GGCC 1 cut(s) 300
ApeKI GCWGC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 149
AsuHPI GGTGA 2 cut(s) 167, 238
AvaII GGWCC 1 cut(s) 149
BalI TGGCCA 1 cut(s) 302
BbvCI CCTCAGC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 86
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 149
BmsI GCATC 1 cut(s) 112
Bpu10I CCTNAGC 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 153
BsaAI YACGTR 1 cut(s) 41
BsaI GGTCTC 1 cut(s) 86
Bse1I ACTGG 2 cut(s) 96, 215
Bse3DI GCAATG 1 cut(s) 137
BseMI GCAATG 1 cut(s) 137
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 2 cut(s) 96, 215
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 1 cut(s) 38
BseYI CCCAGC 1 cut(s) 178
BshFI GGCC 1 cut(s) 302
BsmAI GTCTC 1 cut(s) 86
BsnI GGCC 1 cut(s) 302
Bso31I GGTCTC 1 cut(s) 86
Bsp1407I TGTACA 1 cut(s) 100
BspANI GGCC 1 cut(s) 302
BspCNI CTCAG 1 cut(s) 79
BspTNI GGTCTC 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 137
BsrGI TGTACA 1 cut(s) 100
BsrI ACTGG 2 cut(s) 96, 215
BstAUI TGTACA 1 cut(s) 100
BstBAI YACGTR 1 cut(s) 41
BstDEI CTNAG 1 cut(s) 87
BstMAI GTCTC 1 cut(s) 86
BstNSI RCATGY 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 38
BsuRI GGCC 1 cut(s) 302
BtsIMutI CAGTG 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 149
Csp6I GTAC 1 cut(s) 101
CviAII CATG 4 cut(s) 104, 190, 223, 315
CviJI RGCY 3 cut(s) 86, 142, 302
CviKI_1 RGCY 3 cut(s) 86, 142, 302
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 1 cut(s) 87
EaeI YGGCCR 1 cut(s) 300
Eco31I GGTCTC 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 149
FaeI CATG 4 cut(s) 107, 193, 226, 318
FaiI YATR 8 cut(s) 63, 105, 147, 191, 224, 258, 291, 316
FatI CATG 4 cut(s) 103, 189, 222, 314
Fnu4HI GCNGC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 27
GsaI CCCAGC 1 cut(s) 182
HaeIII GGCC 1 cut(s) 302
Hin1II CATG 4 cut(s) 107, 193, 226, 318
HphI GGTGA 2 cut(s) 167, 238
Hpy166II GTNNAC 2 cut(s) 101, 175
Hpy188I TCNGA 1 cut(s) 156
Hpy188III TCNNGA 1 cut(s) 112
Hpy8I GTNNAC 2 cut(s) 101, 175
HpyCH4IV ACGT 3 cut(s) 40, 215, 284
HpyCH4V TGCA 4 cut(s) 130, 189, 222, 318
HpyF3I CTNAG 1 cut(s) 87
HpySE526I ACGT 3 cut(s) 40, 215, 284
Hsp92II CATG 4 cut(s) 107, 193, 226, 318
LpnPI CCDG 5 cut(s) 65, 109, 192, 196, 252
Lsp1109I GCAGC 1 cut(s) 38
LweI GCATC 1 cut(s) 112
MaeII ACGT 3 cut(s) 40, 215, 284
MaeIII GTNAC 1 cut(s) 77
MboII GAAGA 1 cut(s) 306
MlsI TGGCCA 1 cut(s) 302
MluCI AATT 3 cut(s) 115, 158, 233
MluNI TGGCCA 1 cut(s) 302
MnlI CCTC 2 cut(s) 82, 162
Mox20I TGGCCA 1 cut(s) 302
MscI TGGCCA 1 cut(s) 302
MseI TTAA 2 cut(s) 161, 322
Msp20I TGGCCA 1 cut(s) 302
NlaIII CATG 4 cut(s) 107, 193, 226, 318
NspI RCATGY 1 cut(s) 107
PciI ACATGT 1 cut(s) 103
PkrI GCNGC 1 cut(s) 28
Ppu21I YACGTR 1 cut(s) 41
PscI ACATGT 1 cut(s) 103
PspFI CCCAGC 1 cut(s) 178
PspPI GGNCC 1 cut(s) 149
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
SaqAI TTAA 2 cut(s) 161, 322
SatI GCNGC 1 cut(s) 27
Sau96I GGNCC 1 cut(s) 149
SetI ASST 3 cut(s) 43, 218, 287
SfaNI GCATC 1 cut(s) 112
SinI GGWCC 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
Sse9I AATT 3 cut(s) 115, 158, 233
TaiI ACGT 3 cut(s) 43, 218, 287
TasI AATT 3 cut(s) 115, 158, 233
TatI WGTACW 1 cut(s) 100
Tru1I TTAA 2 cut(s) 161, 322
Tru9I TTAA 2 cut(s) 161, 322
TscAI CASTG 1 cut(s) 103
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 1 cut(s) 206
TspRI CASTG 1 cut(s) 103
VpaK11BI GGWCC 1 cut(s) 149
XceI RCATGY 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.