Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009851

Physical Location & Seq

Genomic Coordinates Forward (+)

25854077 .. 25855484

Gene Structure 1408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G64680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGATTTCGATTTCAAAGTTTCCGGAGATTTCATAGTCAGTGGCGCAGAGCAGCTAGATGACACTGATTTGACGCGTTCTGATGAGTTTTGGCTTATCCAAGCCCCTTTAGGCCAATTTCCAGAAATCGAAGAGAACACTCTTAAGATTGAGCCAGACAAAGATGGGTTATTTGGAGAATTCAAGGATTCAAATGGTGCAAAGTATGATCTTGCTAGCTTTCATTCTCAAGATGCTGGTGCAGAGTTGATTATACCTTCTGAAGAATCAATGATTGTTGGGAAGATTACTCGGCGAGTTGCATTAGTTCGTTACCCTGAACCAAACGAGTTGCTTCAGAAAATGAAGGCTAGAACACAACAGAAGCTTGTCGGATCAGTGACGAATTCCTCTAAGAAATCATCTAACCTTACTCAAAGCAGCCGGCATAAAAGCGGCACACGTAGCAGCAGAGAGAAGAGCATGTTCTCTGGCTTCACCGAGACTCCAAAGTCGCCAAAAAGAAAAAATTCAGAGTCTTCCTCAGGTAAACATCGGAGCTCAACAAGTACGGTTTCAGGCTCTTCAGAACGATCAGCAAAGTCCAAGAAGAAGGTGAAGAAGGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

203

Amino Acids

22.53

Weight (kDa)

9.13

Isoelectric Point (pI)

56.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64680 AT5G64680 AT5G64680
fragaria_vesca	FvH4_4g22530
malus_domestica	MD13G1131700.v1.1 MD16G1142000.v1.1
prunus_persica	Prupe.1G213900_v2.0.a1
pyrus_communis	pycom16g11250
rosa_chinensis	RchiOBHm_Chr4g0428761
rosa_laevigata	RLG00000002014
rosa_multiflora	Rmu_sc0001300.1_g000001 Rmu_sc0004200.1_g000017 Rmu_sc0010032.1_g000001 Rmu_sc0024131.1_g000004
rosa_roxburghii	Rroxscaffold_4G00308580 Rroxscaffold_5G00370430
rosa_samantha	Rh4AG285500 Rh4BG291500 Rh4CG307300 Rh4DG288600
rosa_wichuraiana	Rw4G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	490
AccII	CGCG	1 cut(s)	76
AccIII	TCCGGA	1 cut(s)	23
AciI	CCGC	1 cut(s)	435
AclWI	GGATC	1 cut(s)	382
AcsI	RAATTY	3 cut(s)	179, 385, 508
AcuI	CTGAAG	3 cut(s)	282, 320, 549
AfaI	GTAC	1 cut(s)	550
AflII	CTTAAG	1 cut(s)	143
AflIII	ACRYGT	2 cut(s)	74, 440
AgsI	TTSAA	3 cut(s)	16, 184, 192
AluBI	AGCT	4 cut(s)	55, 219, 367, 540
AluI	AGCT	4 cut(s)	55, 219, 367, 540
Alw21I	GWGCWC	1 cut(s)	542
Alw26I	GTCTC	1 cut(s)	476
AlwI	GGATC	1 cut(s)	382
Aor13HI	TCCGGA	1 cut(s)	23
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	3 cut(s)	52, 420, 447
ApoI	RAATTY	3 cut(s)	179, 385, 508
Asp700I	GAANNNNTTC	1 cut(s)	508
AspLEI	GCGC	1 cut(s)	47
AsuHPI	GGTGA	2 cut(s)	469, 607
AsuNHI	GCTAGC	1 cut(s)	215
AxyI	CCTNAGG	1 cut(s)	523
BanII	GRGCYC	1 cut(s)	542
BbsI	GAAGAC	1 cut(s)	510
Bbv12I	GWGCWC	1 cut(s)	542
BbvI	GCAGC	3 cut(s)	64, 432, 459
BccI	CCATC	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	476
BfaI	CTAG	3 cut(s)	56, 216, 351
BfrI	CTTAAG	1 cut(s)	143
BisI	GCNGC	4 cut(s)	53, 421, 436, 448
BlsI	GCNGC	4 cut(s)	54, 422, 437, 449
BmsI	GCATC	1 cut(s)	223
BmtI	GCTAGC	1 cut(s)	219
BpiI	GAAGAC	1 cut(s)	510
BplI	GAGNNNNNCTC	2 cut(s)	506, 538
BpuEI	CTTGAG	1 cut(s)	213
BsaAI	YACGTR	1 cut(s)	443
BsaWI	WCCGGW	1 cut(s)	23
BsaXI	ACNNNNNCTCC	2 cut(s)	469, 499
Bse118I	RCCGGY	1 cut(s)	423
Bse21I	CCTNAGG	1 cut(s)	523
BseAI	TCCGGA	1 cut(s)	23
BseMII	CTCAG	1 cut(s)	537
BseXI	GCAGC	3 cut(s)	64, 432, 459
BsgI	GTGCAG	1 cut(s)	261
Bsh1236I	CGCG	1 cut(s)	76
BshFI	GGCC	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	542
BsiSI	CCGG	2 cut(s)	24, 424
BsmAI	GTCTC	1 cut(s)	476
BsnI	GGCC	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	542
Bsp13I	TCCGGA	1 cut(s)	23
Bsp143I	GATC	3 cut(s)	208, 374, 572
BspACI	CCGC	1 cut(s)	435
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	536
BspEI	TCCGGA	1 cut(s)	23
BspFNI	CGCG	1 cut(s)	76
BspOI	GCTAGC	1 cut(s)	219
BspPI	GGATC	1 cut(s)	382
BspQI	GCTCTTC	2 cut(s)	452, 568
BspTI	CTTAAG	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	423
BssAI	RCCGGY	1 cut(s)	423
BssMI	GATC	3 cut(s)	208, 374, 572
Bst4CI	ACNGT	1 cut(s)	553
Bst6I	CTCTTC	4 cut(s)	126, 452, 568, 600
BstAFI	CTTAAG	1 cut(s)	143
BstBAI	YACGTR	1 cut(s)	443
BstC8I	GCNNGC	2 cut(s)	217, 425
BstDEI	CTNAG	2 cut(s)	393, 523
BstFNI	CGCG	1 cut(s)	76
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	3 cut(s)	211, 377, 575
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	3 cut(s)	208, 374, 572
BstMWI	GCNNNNNNNGC	1 cut(s)	444
BstNSI	RCATGY	1 cut(s)	466
BstUI	CGCG	1 cut(s)	76
BstV1I	GCAGC	3 cut(s)	64, 432, 459
BstV2I	GAAGAC	1 cut(s)	510
Bsu36I	CCTNAGG	1 cut(s)	523
BsuRI	GGCC	1 cut(s)	114
BtsIMutI	CAGTG	3 cut(s)	46, 63, 384
Cac8I	GCNNGC	2 cut(s)	217, 425
CfoI	GCGC	1 cut(s)	47
Cfr10I	RCCGGY	1 cut(s)	423
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	549
CviAII	CATG	1 cut(s)	463
CviQI	GTAC	1 cut(s)	549
DdeI	CTNAG	2 cut(s)	393, 523
DpnI	GATC	3 cut(s)	210, 376, 574
DpnII	GATC	3 cut(s)	208, 374, 572
DrdI	GACNNNNNNGTC	1 cut(s)	490
DseDI	GACNNNNNNGTC	1 cut(s)	490
Eam1104I	CTCTTC	4 cut(s)	126, 452, 568, 600
EarI	CTCTTC	4 cut(s)	126, 452, 568, 600
Ecl136II	GAGCTC	1 cut(s)	540
Eco24I	GRGCYC	1 cut(s)	542
Eco53kI	GAGCTC	1 cut(s)	540
Eco57I	CTGAAG	3 cut(s)	282, 320, 549
Eco81I	CCTNAGG	1 cut(s)	523
EcoICRI	GAGCTC	1 cut(s)	540
EcoRI	GAATTC	2 cut(s)	179, 385
EcoT38I	GRGCYC	1 cut(s)	542
FaeI	CATG	1 cut(s)	466
FaiI	YATR	5 cut(s)	35, 207, 254, 429, 464
FatI	CATG	1 cut(s)	462
Fnu4HI	GCNGC	4 cut(s)	53, 421, 436, 448
FriOI	GRGCYC	1 cut(s)	542
Fsp4HI	GCNGC	4 cut(s)	53, 421, 436, 448
FspBI	CTAG	3 cut(s)	56, 216, 351
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	4 cut(s)	53, 421, 436, 448
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	2 cut(s)	24, 424
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	1 cut(s)	466
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	4 cut(s)	188, 266, 484, 515
HpaII	CCGG	2 cut(s)	24, 424
HphI	GGTGA	2 cut(s)	469, 607
Hpy166II	GTNNAC	1 cut(s)	530
Hpy188I	TCNGA	7 cut(s)	82, 262, 339, 374, 514, 537, 568
Hpy188III	TCNNGA	3 cut(s)	24, 122, 230
Hpy8I	GTNNAC	1 cut(s)	530
HpyAV	CCTTC	4 cut(s)	267, 340, 586, 595
HpyCH4III	ACNGT	1 cut(s)	553
HpyCH4IV	ACGT	1 cut(s)	442
HpyCH4V	TGCA	3 cut(s)	200, 242, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	444
HpyF3I	CTNAG	2 cut(s)	393, 523
HpySE526I	ACGT	1 cut(s)	442
Hsp92II	CATG	1 cut(s)	466
HspAI	GCGC	1 cut(s)	45
Kpn2I	TCCGGA	1 cut(s)	23
KroI	GCCGGC	1 cut(s)	423
KroNI	GCCGGC	1 cut(s)	425
Kzo9I	GATC	3 cut(s)	208, 374, 572
LguI	GCTCTTC	2 cut(s)	452, 568
LmnI	GCTCC	1 cut(s)	537
LpnPI	CCDG	9 cut(s)	37, 135, 168, 222, 330, 437, 456, 510, 543
Lsp1109I	GCAGC	3 cut(s)	64, 432, 459
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	3 cut(s)	56, 216, 351
MaeII	ACGT	1 cut(s)	442
MaeIII	GTNAC	2 cut(s)	311, 379
MalI	GATC	3 cut(s)	210, 376, 574
MboI	GATC	3 cut(s)	208, 374, 572
MboII	GAAGA	8 cut(s)	143, 275, 295, 469, 510, 555, 601, 610
MhlI	GDGCHC	1 cut(s)	542
MluCI	AATT	4 cut(s)	116, 179, 385, 508
MluI	ACGCGT	1 cut(s)	74
MlyI	GAGTC	2 cut(s)	478, 524
MmeI	TCCRAC	1 cut(s)	352
MnlI	CCTC	2 cut(s)	400, 532
MroI	TCCGGA	1 cut(s)	23
MroNI	GCCGGC	1 cut(s)	423
MroXI	GAANNNNTTC	1 cut(s)	508
MseI	TTAA	1 cut(s)	144
MspCI	CTTAAG	1 cut(s)	143
MspI	CCGG	2 cut(s)	24, 424
MvnI	CGCG	1 cut(s)	76
MwoI	GCNNNNNNNGC	1 cut(s)	444
NaeI	GCCGGC	1 cut(s)	425
NdeII	GATC	3 cut(s)	208, 374, 572
NgoMIV	GCCGGC	1 cut(s)	423
NheI	GCTAGC	1 cut(s)	215
NlaIII	CATG	1 cut(s)	466
NmeAIII	GCCGAG	1 cut(s)	271
NmuCI	GTSAC	1 cut(s)	379
NspI	RCATGY	1 cut(s)	466
PciSI	GCTCTTC	2 cut(s)	452, 568
PdiI	GCCGGC	1 cut(s)	425
PdmI	GAANNNNTTC	1 cut(s)	508
PfeI	GAWTC	2 cut(s)	188, 266
PkrI	GCNGC	4 cut(s)	54, 422, 437, 449
PleI	GAGTC	2 cut(s)	478, 523
PpsI	GAGTC	2 cut(s)	478, 523
Ppu21I	YACGTR	1 cut(s)	443
Psp124BI	GAGCTC	1 cut(s)	542
RsaI	GTAC	1 cut(s)	550
RsaNI	GTAC	1 cut(s)	549
SacI	GAGCTC	1 cut(s)	542
SapI	GCTCTTC	2 cut(s)	452, 568
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	4 cut(s)	53, 421, 436, 448
Sau3AI	GATC	3 cut(s)	208, 374, 572
SchI	GAGTC	2 cut(s)	478, 524
SduI	GDGCHC	1 cut(s)	542
SetI	ASST	9 cut(s)	57, 221, 259, 369, 411, 445, 529, 542, 597
SfaNI	GCATC	1 cut(s)	223
SmlI	CTYRAG	2 cut(s)	143, 228
SmoI	CTYRAG	2 cut(s)	143, 228
Sse9I	AATT	4 cut(s)	116, 179, 385, 508
SsiI	CCGC	1 cut(s)	435
SspMI	CTAG	3 cut(s)	56, 216, 351
SstI	GAGCTC	1 cut(s)	542
TaaI	ACNGT	1 cut(s)	553
TaiI	ACGT	1 cut(s)	445
TaqI	TCGA	2 cut(s)	9, 129
TasI	AATT	4 cut(s)	116, 179, 385, 508
TauI	GCSGC	1 cut(s)	438
TfiI	GAWTC	2 cut(s)	188, 266
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	3 cut(s)	46, 70, 384
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	3 cut(s)	52, 420, 447
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	3 cut(s)	22, 212, 359
TspRI	CASTG	3 cut(s)	46, 70, 384
Vha464I	CTTAAG	1 cut(s)	143
XapI	RAATTY	3 cut(s)	179, 385, 508
XceI	RCATGY	1 cut(s)	466
XmnI	GAANNNNTTC	1 cut(s)	508
XspI	CTAG	3 cut(s)	56, 216, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.