Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0009851

Physical Location & Seq

Genomic Coordinates Reverse (-)

24347146 .. 24352771

Gene Structure 5626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002014

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGGGTTGATATCGTCAGTGTCGAGGCGTGAGACGGAGATGATGGTGGTGGTGGGCAACTCCTCGAAAATCCTCGAGGGTTGGAACAACGAGTGCCGGAACTATAACAGCGACAATGGTGAGGCCGCGGAGGTTCAGGATTGCCAATCAATCGAACGGCGACGAGAACGTTGGAGTGGCGCTCCGACTGGAGCTTCTTCATCGTCTTCAGGTTATGATGGTAAAGAGCTGTCACTCAAGCTTCATGGTGATGGAAAGATTGGCAATTTTGAAGGTGCATCAGGGAAAGAATATGACCTAGGCAATTTTAAAGAGTATGAAGAGCTTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

12.12

Weight (kDa)

4.81

Isoelectric Point (pI)

54.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64680 AT5G64680 AT5G64680
fragaria_vesca	FvH4_4g22530
malus_domestica	MD13G1131700.v1.1 MD16G1142000.v1.1
prunus_persica	Prupe.1G213900_v2.0.a1
pyrus_communis	pycom16g11250
rosa_chinensis	RchiOBHm_Chr4g0428761
rosa_laevigata	RLG00000002014
rosa_multiflora	Rmu_sc0001300.1_g000001 Rmu_sc0004200.1_g000017 Rmu_sc0010032.1_g000001 Rmu_sc0024131.1_g000004
rosa_roxburghii	Rroxscaffold_4G00308580 Rroxscaffold_5G00370430
rosa_samantha	Rh4AG285500 Rh4BG291500 Rh4CG307300 Rh4DG288600
rosa_wichuraiana	Rw4G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	74
AccII	CGCG	1 cut(s)	128
AciI	CCGC	2 cut(s)	126, 128
AclI	AACGTT	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	272, 329
AluBI	AGCT	4 cut(s)	194, 229, 241, 325
AluI	AGCT	4 cut(s)	194, 229, 241, 325
Alw26I	GTCTC	1 cut(s)	26
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	1 cut(s)	123
Asp700I	GAANNNNTTC	1 cut(s)	324
AspA2I	CCTAGG	1 cut(s)	298
AspLEI	GCGC	1 cut(s)	182
AsuHPI	GGTGA	2 cut(s)	131, 260
AvaI	CYCGRG	1 cut(s)	74
AvrII	CCTAGG	1 cut(s)	298
BbsI	GAAGAC	1 cut(s)	198
BccI	CCATC	3 cut(s)	37, 212, 245
BceAI	ACGGC	1 cut(s)	173
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	1 cut(s)	299
BfoI	RGCGCY	1 cut(s)	183
BisI	GCNGC	1 cut(s)	126
BlnI	CCTAGG	1 cut(s)	298
BlsI	GCNGC	1 cut(s)	127
BmeT110I	CYCGRG	1 cut(s)	74
BmsI	GCATC	1 cut(s)	287
BpiI	GAAGAC	1 cut(s)	198
BplI	GAGNNNNNCTC	2 cut(s)	166, 198
BpmI	CTGGAG	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	126, 298
Bse1I	ACTGG	1 cut(s)	193
BseDI	CCNNGG	2 cut(s)	126, 298
BseNI	ACTGG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	52
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	1 cut(s)	125
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	97
BsmAI	GTCTC	1 cut(s)	26
BsmBI	CGTCTC	1 cut(s)	26
BsnI	GGCC	1 cut(s)	125
BsoBI	CYCGRG	1 cut(s)	74
BspACI	CCGC	2 cut(s)	126, 128
BspANI	GGCC	1 cut(s)	125
BspFNI	CGCG	1 cut(s)	128
BspQI	GCTCTTC	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	2 cut(s)	126, 298
BssT1I	CCWWGG	1 cut(s)	298
Bst6I	CTCTTC	1 cut(s)	315
BstDSI	CCRYGG	1 cut(s)	126
BstFNI	CGCG	1 cut(s)	128
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	182
BstMAI	GTCTC	1 cut(s)	26
BstUI	CGCG	1 cut(s)	128
BstV2I	GAAGAC	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	125
BtgI	CCRYGG	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	24
CfoI	GCGC	1 cut(s)	182
Cfr42I	CCGCGG	1 cut(s)	129
CviAII	CATG	1 cut(s)	245
CviJI	RGCY	5 cut(s)	125, 194, 229, 241, 325
CviKI_1	RGCY	5 cut(s)	125, 194, 229, 241, 325
DraI	TTTAAA	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Eco130I	CCWWGG	1 cut(s)	298
Eco32I	GATATC	1 cut(s)	12
Eco57I	CTGAAG	1 cut(s)	192
Eco88I	CYCGRG	1 cut(s)	74
EcoRV	GATATC	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	298
Esp3I	CGTCTC	1 cut(s)	26
FaeI	CATG	1 cut(s)	248
FaiI	YATR	5 cut(s)	105, 216, 246, 294, 318
FatI	CATG	1 cut(s)	244
Fnu4HI	GCNGC	1 cut(s)	126
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	1 cut(s)	299
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	1 cut(s)	126
GsuI	CTGGAG	1 cut(s)	210
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	1 cut(s)	97
HhaI	GCGC	1 cut(s)	182
Hin1II	CATG	1 cut(s)	248
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HindIII	AAGCTT	1 cut(s)	239
HpaII	CCGG	1 cut(s)	97
HphI	GGTGA	2 cut(s)	131, 260
Hpy188I	TCNGA	1 cut(s)	186
Hpy188III	TCNNGA	1 cut(s)	137
Hpy99I	CGWCG	1 cut(s)	165
HpyAV	CCTTC	1 cut(s)	266
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	1 cut(s)	278
HpySE526I	ACGT	1 cut(s)	169
Hsp92II	CATG	1 cut(s)	248
HspAI	GCGC	1 cut(s)	180
KspI	CCGCGG	1 cut(s)	129
LguI	GCTCTTC	1 cut(s)	315
LmnI	GCTCC	2 cut(s)	187, 191
LpnPI	CCDG	5 cut(s)	110, 122, 174, 195, 267
LweI	GCATC	1 cut(s)	287
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	1 cut(s)	169
MaeIII	GTNAC	1 cut(s)	231
MboII	GAAGA	3 cut(s)	189, 198, 332
MluCI	AATT	2 cut(s)	265, 304
MmeI	TCCRAC	3 cut(s)	62, 152, 209
MnlI	CCTC	6 cut(s)	18, 70, 73, 83, 115, 124
MroXI	GAANNNNTTC	1 cut(s)	324
MseI	TTAA	1 cut(s)	309
MslI	CAYNNNNRTG	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	1 cut(s)	97
MvnI	CGCG	1 cut(s)	128
NlaIII	CATG	1 cut(s)	248
NmuCI	GTSAC	1 cut(s)	231
PaeR7I	CTCGAG	1 cut(s)	74
PciSI	GCTCTTC	1 cut(s)	315
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PdmI	GAANNNNTTC	1 cut(s)	324
PkrI	GCNGC	1 cut(s)	127
Psp1406I	AACGTT	1 cut(s)	169
PspXI	VCTCGAGB	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	249
SacII	CCGCGG	1 cut(s)	129
SapI	GCTCTTC	1 cut(s)	315
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	1 cut(s)	126
SetI	ASST	9 cut(s)	135, 172, 196, 214, 231, 243, 277, 300, 327
SfaNI	GCATC	1 cut(s)	287
Sfr274I	CTCGAG	1 cut(s)	74
Sfr303I	CCGCGG	1 cut(s)	129
SgrBI	CCGCGG	1 cut(s)	129
SlaI	CTCGAG	1 cut(s)	74
SmiMI	CAYNNNNRTG	1 cut(s)	249
SmlI	CTYRAG	2 cut(s)	74, 236
SmoI	CTYRAG	2 cut(s)	74, 236
Sse9I	AATT	2 cut(s)	265, 304
SsiI	CCGC	2 cut(s)	126, 128
SspMI	CTAG	1 cut(s)	299
StyI	CCWWGG	1 cut(s)	298
TaiI	ACGT	1 cut(s)	172
TaqI	TCGA	4 cut(s)	23, 65, 75, 153
TasI	AATT	2 cut(s)	265, 304
TauI	GCSGC	1 cut(s)	128
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	24
TseFI	GTSAC	1 cut(s)	231
Tsp45I	GTSAC	1 cut(s)	231
TspDTI	ATGAA	3 cut(s)	189, 233, 333
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	1 cut(s)	24
XhoI	CTCGAG	1 cut(s)	74
XmaJI	CCTAGG	1 cut(s)	298
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.