Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0009851

Physical Location & Seq

Genomic Coordinates Forward (+)

56934571 .. 56938047

Gene Structure 3477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG307300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGAAGGCTACAAGCCTCCGGCAGATTTTGAAGAGAATGCTAAAGACCCACTGCTCGATTTCAACGTGAACGATTCTACTGAGCTTTGGCTCATTCAGTGGCCTAAAAATCAAAATCCAGATTATGATGGGAAAGAGCTGTCGCTTCAGCTTCATGGTGATGGAAAGTTGGGCAGTTTTGAAGGCGCATCTGGGAAAGAATATGAGCTGGTCAGTTCCTCAACTCAACAGTCAAATGCTACAGTTTTTGTATCTTCTGCCTCTGGCACAAAAATTGCTGGGAAGATTTCACGGCGAGTTTCTCTGGTGCATTTCCCTGAGCCCAGTGAGCTTCAAGAGCGTCAAGAGCTTCAAATGGCAAAATTCCGAAAAAAGAATCAGATATCGTCCTCAATGGCATTAACCCATTCTTCCCAGAAAACTCCTTCACGCAGCACGAGAACTACAACTACTGCAACTCCTACGCAAAGTACGTTTCAGAGAAGTTCGCGACCAATAAATGGACGCGCATCCTCCCCTCATAGTAGTGAACATAAAAGTTCTGTTAGTGAAGCTGGGGAGCAATCACAGCTTCGGAACAAACGGCATGCTTCCCCCGGTCGAAGTCATAGTGGCGTTACTTCATCAGGACAAGGTCGTAGTTCTACTACTACTTCCTCAGGAGAAAGGTCATCAAAGAAAATCAAGGAAAAACATAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

25.68

Weight (kDa)

9.83

Isoelectric Point (pI)

68.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64680 AT5G64680 AT5G64680
fragaria_vesca	FvH4_4g22530
malus_domestica	MD13G1131700.v1.1 MD16G1142000.v1.1
prunus_persica	Prupe.1G213900_v2.0.a1
pyrus_communis	pycom16g11250
rosa_chinensis	RchiOBHm_Chr4g0428761
rosa_laevigata	RLG00000002014
rosa_multiflora	Rmu_sc0001300.1_g000001 Rmu_sc0004200.1_g000017 Rmu_sc0010032.1_g000001 Rmu_sc0024131.1_g000004
rosa_roxburghii	Rroxscaffold_4G00308580 Rroxscaffold_5G00370430
rosa_samantha	Rh4AG285500 Rh4BG291500 Rh4CG307300 Rh4DG288600
rosa_wichuraiana	Rw4G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	500
AccII	CGCG	2 cut(s)	490, 507
AcsI	RAATTY	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	131
AfaI	GTAC	1 cut(s)	472
AfiI	CCNNNNNNNGG	1 cut(s)	500
AgsI	TTSAA	5 cut(s)	32, 64, 182, 335, 353
AluBI	AGCT	8 cut(s)	85, 139, 151, 208, 331, 349, 554, 571
AluI	AGCT	8 cut(s)	85, 139, 151, 208, 331, 349, 554, 571
AoxI	GGCC	1 cut(s)	101
ApeKI	GCWGC	1 cut(s)	432
ApoI	RAATTY	1 cut(s)	362
AspLEI	GCGC	2 cut(s)	188, 509
AsuC2I	CCSGG	1 cut(s)	597
AsuHPI	GGTGA	1 cut(s)	170
AxyI	CCTNAGG	1 cut(s)	658
BanII	GRGCYC	1 cut(s)	324
BauI	CACGAG	1 cut(s)	436
BbvI	GCAGC	1 cut(s)	444
BccI	CCATC	2 cut(s)	122, 155
BceAI	ACGGC	2 cut(s)	308, 599
BcnI	CCSGG	1 cut(s)	597
BfmI	CTRYAG	1 cut(s)	240
BisI	GCNGC	1 cut(s)	433
BlsI	GCNGC	1 cut(s)	434
Bme1390I	CCNGG	1 cut(s)	597
BmrFI	CCNGG	1 cut(s)	597
BmrI	ACTGGG	1 cut(s)	318
BmsI	GCATC	2 cut(s)	197, 518
BmuI	ACTGGG	1 cut(s)	318
Bpu10I	CCTNAGC	1 cut(s)	318
BpuMI	CCSGG	1 cut(s)	597
BsaJI	CCNNGG	1 cut(s)	595
BsaXI	ACNNNNNCTCC	2 cut(s)	442, 472
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse1I	ACTGG	1 cut(s)	324
Bse21I	CCTNAGG	1 cut(s)	658
BseDI	CCNNGG	1 cut(s)	595
BseGI	GGATG	1 cut(s)	509
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMII	CTCAG	3 cut(s)	72, 309, 672
BseNI	ACTGG	1 cut(s)	324
BseXI	GCAGC	1 cut(s)	444
BseYI	CCCAGC	2 cut(s)	278, 554
Bsh1236I	CGCG	2 cut(s)	490, 507
Bsh1285I	CGRYCG	1 cut(s)	601
BshFI	GGCC	1 cut(s)	103
BsiEI	CGRYCG	1 cut(s)	601
BsiSI	CCGG	2 cut(s)	20, 597
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmI	GAATGC	1 cut(s)	43
BsnI	GGCC	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp68I	TCGCGA	1 cut(s)	490
BspANI	GGCC	1 cut(s)	103
BspCNI	CTCAG	3 cut(s)	73, 310, 671
BspFNI	CGCG	2 cut(s)	490, 507
BsrI	ACTGG	1 cut(s)	324
BssECI	CCNNGG	1 cut(s)	595
BssSI	CACGAG	1 cut(s)	436
Bst2BI	CACGAG	1 cut(s)	436
Bst4CI	ACNGT	2 cut(s)	231, 244
Bst6I	CTCTTC	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	588
BstDEI	CTNAG	3 cut(s)	81, 318, 658
BstF5I	GGATG	1 cut(s)	509
BstFNI	CGCG	2 cut(s)	490, 507
BstHHI	GCGC	2 cut(s)	188, 509
BstMCI	CGRYCG	1 cut(s)	601
BstMWI	GCNNNNNNNGC	4 cut(s)	328, 337, 346, 568
BstNSI	RCATGY	1 cut(s)	590
BstSCI	CCNGG	1 cut(s)	595
BstSFI	CTRYAG	1 cut(s)	240
BstUI	CGCG	2 cut(s)	490, 507
BstV1I	GCAGC	1 cut(s)	444
Bsu36I	CCTNAGG	1 cut(s)	658
BsuRI	GGCC	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	509
BtsI	GCAGTG	1 cut(s)	50
BtsIMutI	CAGTG	3 cut(s)	50, 104, 331
BtuMI	TCGCGA	1 cut(s)	490
Cac8I	GCNNGC	1 cut(s)	588
CfoI	GCGC	2 cut(s)	188, 509
CseI	GACGC	2 cut(s)	329, 513
Csp6I	GTAC	1 cut(s)	471
CviAII	CATG	2 cut(s)	155, 587
CviQI	GTAC	1 cut(s)	471
DdeI	CTNAG	3 cut(s)	81, 318, 658
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	324
Eco32I	GATATC	1 cut(s)	384
Eco57I	CTGAAG	1 cut(s)	131
Eco81I	CCTNAGG	1 cut(s)	658
EcoRV	GATATC	1 cut(s)	384
EcoT38I	GRGCYC	1 cut(s)	324
FaeI	CATG	2 cut(s)	158, 590
FaiI	YATR	8 cut(s)	126, 156, 204, 522, 534, 588, 609, 696
FatI	CATG	2 cut(s)	154, 586
Fnu4HI	GCNGC	1 cut(s)	433
FokI	GGATG	1 cut(s)	496
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	1 cut(s)	433
GlaI	GCGC	2 cut(s)	187, 508
GluI	GCNGC	1 cut(s)	433
GsaI	CCCAGC	2 cut(s)	282, 558
HaeIII	GGCC	1 cut(s)	103
HapII	CCGG	2 cut(s)	20, 597
HgaI	GACGC	2 cut(s)	329, 513
HhaI	GCGC	2 cut(s)	188, 509
Hin1II	CATG	2 cut(s)	158, 590
Hin6I	GCGC	2 cut(s)	186, 507
HinP1I	GCGC	2 cut(s)	186, 507
HinfI	GANTC	2 cut(s)	74, 376
HpaII	CCGG	2 cut(s)	20, 597
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	2 cut(s)	70, 530
Hpy188I	TCNGA	4 cut(s)	368, 381, 480, 576
Hpy188III	TCNNGA	6 cut(s)	119, 335, 344, 489, 627, 660
Hpy8I	GTNNAC	2 cut(s)	70, 530
HpyAV	CCTTC	2 cut(s)	176, 435
HpyCH4III	ACNGT	2 cut(s)	231, 244
HpyCH4IV	ACGT	2 cut(s)	66, 473
HpyCH4V	TGCA	2 cut(s)	310, 455
HpyF10VI	GCNNNNNNNGC	4 cut(s)	328, 337, 346, 568
HpyF3I	CTNAG	3 cut(s)	81, 318, 658
HpySE526I	ACGT	2 cut(s)	66, 473
Hsp92II	CATG	2 cut(s)	158, 590
HspAI	GCGC	2 cut(s)	186, 507
LmnI	GCTCC	1 cut(s)	559
Lsp1109I	GCAGC	1 cut(s)	444
LweI	GCATC	2 cut(s)	197, 518
MaeII	ACGT	2 cut(s)	66, 473
MaeIII	GTNAC	1 cut(s)	616
MboII	GAAGA	4 cut(s)	44, 246, 295, 402
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	2 cut(s)	273, 362
MnlI	CCTC	7 cut(s)	27, 229, 271, 400, 523, 528, 667
MseI	TTAA	1 cut(s)	401
MslI	CAYNNNNRTG	2 cut(s)	159, 525
MspI	CCGG	2 cut(s)	20, 597
MspR9I	CCNGG	1 cut(s)	597
Mva1269I	GAATGC	1 cut(s)	43
MvnI	CGCG	2 cut(s)	490, 507
MwoI	GCNNNNNNNGC	4 cut(s)	328, 337, 346, 568
NciI	CCSGG	1 cut(s)	597
NlaIII	CATG	2 cut(s)	158, 590
NruI	TCGCGA	1 cut(s)	490
NspI	RCATGY	1 cut(s)	590
PaeI	GCATGC	1 cut(s)	590
PcsI	WCGNNNNNNNCGW	2 cut(s)	63, 470
PctI	GAATGC	1 cut(s)	43
PfeI	GAWTC	2 cut(s)	74, 376
PflFI	GACNNNGTC	1 cut(s)	633
PflMI	CCANNNNNTGG	1 cut(s)	500
PkrI	GCNGC	1 cut(s)	434
PspFI	CCCAGC	2 cut(s)	278, 554
PsrI	GAACNNNNNNTAC	2 cut(s)	433, 465
PsyI	GACNNNGTC	1 cut(s)	633
RruI	TCGCGA	1 cut(s)	490
RsaI	GTAC	1 cut(s)	472
RsaNI	GTAC	1 cut(s)	471
RseI	CAYNNNNRTG	2 cut(s)	159, 525
SaqAI	TTAA	1 cut(s)	401
SatI	GCNGC	1 cut(s)	433
ScrFI	CCNGG	1 cut(s)	597
SduI	GDGCHC	1 cut(s)	324
SfaNI	GCATC	2 cut(s)	197, 518
SfcI	CTRYAG	1 cut(s)	240
SmiMI	CAYNNNNRTG	2 cut(s)	159, 525
SphI	GCATGC	1 cut(s)	590
Sse9I	AATT	2 cut(s)	273, 362
StyD4I	CCNGG	1 cut(s)	595
TaaI	ACNGT	2 cut(s)	231, 244
TaiI	ACGT	2 cut(s)	69, 476
TaqI	TCGA	2 cut(s)	57, 601
TasI	AATT	2 cut(s)	273, 362
TfiI	GAWTC	2 cut(s)	74, 376
Tru1I	TTAA	1 cut(s)	401
Tru9I	TTAA	1 cut(s)	401
TscAI	CASTG	3 cut(s)	57, 104, 331
TseI	GCWGC	1 cut(s)	432
TspDTI	ATGAA	2 cut(s)	143, 612
TspRI	CASTG	3 cut(s)	57, 104, 331
Tth111I	GACNNNGTC	1 cut(s)	633
Van91I	CCANNNNNTGG	1 cut(s)	500
XapI	RAATTY	1 cut(s)	362
XceI	RCATGY	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.