Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001300.1

Orthogroup ID

OG0009851

Physical Location & Seq

Genomic Coordinates Reverse (-)

2354 .. 4073

Gene Structure 1720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001300.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atggatgatggacaaggctacaagcctccggcagattttgaagaaaatgctaaagacccagcggtcaatttcaacgtgaacgattttactgagctttggttcattcggtggcctaaaaatcaaaatccaggttatgatggcaaagagttatcactcaagcttcatggtgatggaaagttgggcaattttgaagatgcatcggggaaagaatatgacctggataattttaaaaagcgccaagagcttcaatggaatcaacagctgcataggaatgtaactgtatcaataaaagagaatactactccatctccttcgataccccaagagaaaaccctagccgcctgcttgggtgagagaagagcacgacttttgcctaggcttttgcgagcttgctctcgtccggtggcgctccagcgtcagcgctggctctgcctcgccgacgttgtgatgctgccggacgggttgccagtgctggtcggtgaggtctggtcgtcgttctctgcgctaagcgaccgtgggttgggatctatcggttggacccaagtctggctgttttggtgtcttctctgtggtggcagcatcgcggtggtggtgatcttccttgatgcgggcggcagttcctcgatcacggtgagtcgtggtggtgggatcgtcgttgtgggcgtgcggcaggtgcacagggaagtggaggctaggatgggcttctccaggctggtgtgggccttggatattgctttcttttgggccagttggactgttgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

254

Amino Acids

28.38

Weight (kDa)

6.83

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64680 AT5G64680 AT5G64680
fragaria_vesca	FvH4_4g22530
malus_domestica	MD13G1131700.v1.1 MD16G1142000.v1.1
prunus_persica	Prupe.1G213900_v2.0.a1
pyrus_communis	pycom16g11250
rosa_chinensis	RchiOBHm_Chr4g0428761
rosa_laevigata	RLG00000002014
rosa_multiflora	Rmu_sc0001300.1_g000001 Rmu_sc0004200.1_g000017 Rmu_sc0010032.1_g000001 Rmu_sc0024131.1_g000004
rosa_roxburghii	Rroxscaffold_4G00308580 Rroxscaffold_5G00370430
rosa_samantha	Rh4AG285500 Rh4BG291500 Rh4CG307300 Rh4DG288600
rosa_wichuraiana	Rw4G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	661
AasI	GACNNNNNNGTC	1 cut(s)	62
Acc36I	ACCTGC	1 cut(s)	661
AccII	CGCG	1 cut(s)	584
AciI	CCGC	6 cut(s)	62, 339, 584, 608, 612, 667
AclWI	GGATC	2 cut(s)	532, 656
AfeI	AGCGCT	1 cut(s)	422
AfiI	CCNNNNNNNGG	3 cut(s)	520, 546, 607
AgsI	TTSAA	4 cut(s)	41, 73, 191, 248
AjnI	CCWGG	3 cut(s)	127, 216, 707
AluBI	AGCT	5 cut(s)	94, 160, 244, 262, 389
AluI	AGCT	5 cut(s)	94, 160, 244, 262, 389
Alw21I	GWGCWC	2 cut(s)	364, 678
Alw44I	GTGCAC	1 cut(s)	674
AlwI	GGATC	2 cut(s)	532, 656
Aor51HI	AGCGCT	1 cut(s)	422
AoxI	GGCC	3 cut(s)	110, 720, 744
ApaLI	GTGCAC	1 cut(s)	674
ApeKI	GCWGC	3 cut(s)	262, 451, 576
AspA2I	CCTAGG	1 cut(s)	374
AspLEI	GCGC	4 cut(s)	237, 409, 423, 505
AspS9I	GGNCC	3 cut(s)	537, 720, 744
AsuHPI	GGTGA	5 cut(s)	179, 362, 491, 604, 643
AvaII	GGWCC	1 cut(s)	537
AvrII	CCTAGG	1 cut(s)	374
BaeGI	GKGCMC	1 cut(s)	678
BbsI	GAAGAC	1 cut(s)	554
Bbv12I	GWGCWC	2 cut(s)	364, 678
BbvI	GCAGC	3 cut(s)	249, 438, 588
BccI	CCATC	5 cut(s)	2, 131, 164, 313, 691
BciT130I	CCWGG	3 cut(s)	129, 218, 709
BfaI	CTAG	3 cut(s)	335, 375, 693
BfoI	RGCGCY	3 cut(s)	238, 410, 424
BfuAI	ACCTGC	1 cut(s)	661
BisI	GCNGC	6 cut(s)	263, 339, 452, 577, 613, 668
BlnI	CCTAGG	1 cut(s)	374
BlpI	GCTNAGC	1 cut(s)	506
BlsI	GCNGC	6 cut(s)	264, 340, 453, 578, 614, 669
Bme1390I	CCNGG	3 cut(s)	129, 218, 709
Bme18I	GGWCC	1 cut(s)	537
BmgT120I	GGNCC	3 cut(s)	537, 720, 744
BmiI	GGNNCC	1 cut(s)	539
BmrFI	CCNGG	3 cut(s)	129, 218, 709
BmsI	GCATC	5 cut(s)	184, 206, 438, 588, 595
BoxI	GACNNNNGTC	1 cut(s)	542
BpiI	GAAGAC	1 cut(s)	554
BpmI	CTGGAG	2 cut(s)	395, 691
Bpu1102I	GCTNAGC	1 cut(s)	506
BpuEI	CTTGAG	1 cut(s)	140
BsaJI	CCNNGG	3 cut(s)	374, 514, 723
BsaWI	WCCGGW	1 cut(s)	400
BsaXI	ACNNNNNCTCC	2 cut(s)	292, 322
Bsc4I	CCNNNNNNNGG	3 cut(s)	520, 546, 607
Bse1I	ACTGG	2 cut(s)	467, 747
BseBI	CCWGG	3 cut(s)	129, 218, 709
BseDI	CCNNGG	3 cut(s)	374, 514, 723
BseGI	GGATG	2 cut(s)	10, 702
BseLI	CCNNNNNNNGG	3 cut(s)	520, 546, 607
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	2 cut(s)	467, 747
BseSI	GKGCMC	1 cut(s)	678
BseXI	GCAGC	3 cut(s)	249, 438, 588
BseYI	CCCAGC	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	584
Bsh1285I	CGRYCG	1 cut(s)	514
BshFI	GGCC	3 cut(s)	112, 722, 746
BsiEI	CGRYCG	1 cut(s)	514
BsiHKAI	GWGCWC	2 cut(s)	364, 678
BsiSI	CCGG	3 cut(s)	29, 401, 455
BslI	CCNNNNNNNGG	3 cut(s)	520, 546, 607
BsnI	GGCC	3 cut(s)	112, 722, 746
Bsp1286I	GDGCHC	2 cut(s)	364, 678
Bsp143I	GATC	4 cut(s)	524, 594, 624, 648
Bsp1720I	GCTNAGC	1 cut(s)	506
BspACI	CCGC	6 cut(s)	62, 339, 584, 608, 612, 667
BspANI	GGCC	3 cut(s)	112, 722, 746
BspCNI	CTCAG	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	584
BspLI	GGNNCC	1 cut(s)	539
BspMI	ACCTGC	1 cut(s)	661
BspPI	GGATC	2 cut(s)	532, 656
BspQI	GCTCTTC	1 cut(s)	352
BsrI	ACTGG	2 cut(s)	467, 747
BssECI	CCNNGG	3 cut(s)	374, 514, 723
BssMI	GATC	4 cut(s)	524, 594, 624, 648
BssT1I	CCWWGG	2 cut(s)	374, 723
Bst2UI	CCWGG	3 cut(s)	129, 218, 709
Bst4CI	ACNGT	4 cut(s)	280, 515, 631, 757
Bst6I	CTCTTC	1 cut(s)	352
BstC8I	GCNNGC	6 cut(s)	343, 387, 391, 425, 610, 665
BstDEI	CTNAG	2 cut(s)	90, 506
BstDSI	CCRYGG	1 cut(s)	514
BstF5I	GGATG	2 cut(s)	10, 702
BstFNI	CGCG	1 cut(s)	584
BstH2I	RGCGCY	3 cut(s)	238, 410, 424
BstHHI	GCGC	4 cut(s)	237, 409, 423, 505
BstKTI	GATC	4 cut(s)	527, 597, 627, 651
BstMBI	GATC	4 cut(s)	524, 594, 624, 648
BstMCI	CGRYCG	1 cut(s)	514
BstMWI	GCNNNNNNNGC	3 cut(s)	241, 429, 673
BstNI	CCWGG	3 cut(s)	129, 218, 709
BstPAI	GACNNNNGTC	1 cut(s)	542
BstSCI	CCNGG	3 cut(s)	127, 216, 707
BstSLI	GKGCMC	1 cut(s)	678
BstUI	CGCG	1 cut(s)	584
BstV1I	GCAGC	3 cut(s)	249, 438, 588
BstV2I	GAAGAC	1 cut(s)	554
BstX2I	RGATCY	1 cut(s)	524
BstYI	RGATCY	1 cut(s)	524
BsuRI	GGCC	3 cut(s)	112, 722, 746
BtgI	CCRYGG	1 cut(s)	514
BtgZI	GCGATG	1 cut(s)	565
BtsCI	GGATG	2 cut(s)	10, 702
BtsIMutI	CAGTG	1 cut(s)	474
BveI	ACCTGC	1 cut(s)	661
Cac8I	GCNNGC	6 cut(s)	343, 387, 391, 425, 610, 665
CfoI	GCGC	4 cut(s)	237, 409, 423, 505
Cfr13I	GGNCC	3 cut(s)	537, 720, 744
CseI	GACGC	1 cut(s)	404
CviAII	CATG	2 cut(s)	164, 762
DdeI	CTNAG	2 cut(s)	90, 506
DpnI	GATC	4 cut(s)	526, 596, 626, 650
DpnII	GATC	4 cut(s)	524, 594, 624, 648
DraI	TTTAAA	1 cut(s)	229
DrdI	GACNNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	62
Eam1104I	CTCTTC	1 cut(s)	352
EarI	CTCTTC	1 cut(s)	352
Eco130I	CCWWGG	2 cut(s)	374, 723
Eco47I	GGWCC	1 cut(s)	537
Eco47III	AGCGCT	1 cut(s)	422
EcoRII	CCWGG	3 cut(s)	127, 216, 707
EcoT14I	CCWWGG	2 cut(s)	374, 723
EcoT22I	ATGCAT	1 cut(s)	199
ErhI	CCWWGG	2 cut(s)	374, 723
FaeI	CATG	2 cut(s)	167, 765
FaiI	YATR	5 cut(s)	135, 165, 213, 267, 763
FatI	CATG	2 cut(s)	163, 761
FauI	CCCGC	1 cut(s)	601
Fnu4HI	GCNGC	6 cut(s)	263, 339, 452, 577, 613, 668
FokI	GGATG	2 cut(s)	17, 709
Fsp4HI	GCNGC	6 cut(s)	263, 339, 452, 577, 613, 668
FspBI	CTAG	3 cut(s)	335, 375, 693
GlaI	GCGC	4 cut(s)	236, 408, 422, 504
GluI	GCNGC	6 cut(s)	263, 339, 452, 577, 613, 668
GsaI	CCCAGC	1 cut(s)	62
GsuI	CTGGAG	2 cut(s)	395, 691
HaeII	RGCGCY	3 cut(s)	238, 410, 424
HaeIII	GGCC	3 cut(s)	112, 722, 746
HapII	CCGG	3 cut(s)	29, 401, 455
HgaI	GACGC	1 cut(s)	404
HhaI	GCGC	4 cut(s)	237, 409, 423, 505
Hin1II	CATG	2 cut(s)	167, 765
Hin6I	GCGC	4 cut(s)	235, 407, 421, 503
HinP1I	GCGC	4 cut(s)	235, 407, 421, 503
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	2 cut(s)	253, 634
HpaII	CCGG	3 cut(s)	29, 401, 455
HphI	GGTGA	5 cut(s)	179, 362, 491, 604, 643
Hpy166II	GTNNAC	2 cut(s)	79, 676
Hpy8I	GTNNAC	2 cut(s)	79, 676
Hpy99I	CGWCG	3 cut(s)	443, 496, 656
HpyAV	CCTTC	1 cut(s)	321
HpyCH4III	ACNGT	4 cut(s)	280, 515, 631, 757
HpyCH4IV	ACGT	2 cut(s)	75, 441
HpyCH4V	TGCA	4 cut(s)	197, 265, 676, 761
HpyF10VI	GCNNNNNNNGC	3 cut(s)	241, 429, 673
HpyF3I	CTNAG	2 cut(s)	90, 506
HpySE526I	ACGT	2 cut(s)	75, 441
Hsp92II	CATG	2 cut(s)	167, 765
HspAI	GCGC	4 cut(s)	235, 407, 421, 503
Kzo9I	GATC	4 cut(s)	524, 594, 624, 648
LguI	GCTCTTC	1 cut(s)	352
LmnI	GCTCC	1 cut(s)	414
Lsp1109I	GCAGC	3 cut(s)	249, 438, 588
LweI	GCATC	5 cut(s)	184, 206, 438, 588, 595
MaeI	CTAG	3 cut(s)	335, 375, 693
MaeII	ACGT	2 cut(s)	75, 441
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	4 cut(s)	526, 596, 626, 650
MboI	GATC	4 cut(s)	524, 594, 624, 648
MboII	GAAGA	5 cut(s)	53, 203, 369, 554, 589
MflI	RGATCY	1 cut(s)	524
MhlI	GDGCHC	2 cut(s)	364, 678
MluCI	AATT	3 cut(s)	67, 184, 223
MlyI	GAGTC	1 cut(s)	643
MmeI	TCCRAC	2 cut(s)	515, 731
MnlI	CCTC	5 cut(s)	36, 443, 475, 631, 682
Mph1103I	ATGCAT	1 cut(s)	199
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	3 cut(s)	168, 270, 584
MspA1I	CMGCKG	2 cut(s)	62, 262
MspI	CCGG	3 cut(s)	29, 401, 455
MspR9I	CCNGG	3 cut(s)	129, 218, 709
MvaI	CCWGG	3 cut(s)	129, 218, 709
MvnI	CGCG	1 cut(s)	584
MwoI	GCNNNNNNNGC	3 cut(s)	241, 429, 673
NdeII	GATC	4 cut(s)	524, 594, 624, 648
NlaIII	CATG	2 cut(s)	167, 765
NlaIV	GGNNCC	1 cut(s)	539
NsiI	ATGCAT	1 cut(s)	199
PaqCI	CACCTGC	1 cut(s)	661
PciSI	GCTCTTC	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	1 cut(s)	660
PfeI	GAWTC	1 cut(s)	253
PkrI	GCNGC	6 cut(s)	264, 340, 453, 578, 614, 669
PleI	GAGTC	1 cut(s)	642
PpsI	GAGTC	1 cut(s)	642
PshAI	GACNNNNGTC	1 cut(s)	542
Psp6I	CCWGG	3 cut(s)	127, 216, 707
PspFI	CCCAGC	1 cut(s)	58
PspGI	CCWGG	3 cut(s)	127, 216, 707
PspN4I	GGNNCC	1 cut(s)	539
PspPI	GGNCC	3 cut(s)	537, 720, 744
PsuI	RGATCY	1 cut(s)	524
PvuII	CAGCTG	1 cut(s)	262
RseI	CAYNNNNRTG	3 cut(s)	168, 270, 584
SapI	GCTCTTC	1 cut(s)	352
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	6 cut(s)	263, 339, 452, 577, 613, 668
Sau3AI	GATC	4 cut(s)	524, 594, 624, 648
Sau96I	GGNCC	3 cut(s)	537, 720, 744
SchI	GAGTC	1 cut(s)	643
ScrFI	CCNGG	3 cut(s)	129, 218, 709
SduI	GDGCHC	2 cut(s)	364, 678
SfaNI	GCATC	5 cut(s)	184, 206, 438, 588, 595
SinI	GGWCC	1 cut(s)	537
SmiMI	CAYNNNNRTG	3 cut(s)	168, 270, 584
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	3 cut(s)	67, 184, 223
SsiI	CCGC	6 cut(s)	62, 339, 584, 608, 612, 667
SspMI	CTAG	3 cut(s)	335, 375, 693
StyD4I	CCNGG	3 cut(s)	127, 216, 707
StyI	CCWWGG	2 cut(s)	374, 723
TaaI	ACNGT	4 cut(s)	280, 515, 631, 757
TaiI	ACGT	2 cut(s)	78, 444
TaqI	TCGA	2 cut(s)	314, 623
TasI	AATT	3 cut(s)	67, 184, 223
TauI	GCSGC	3 cut(s)	341, 615, 670
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	474
TseI	GCWGC	3 cut(s)	262, 451, 576
TspDTI	ATGAA	2 cut(s)	91, 152
TspRI	CASTG	1 cut(s)	474
VneI	GTGCAC	1 cut(s)	674
VpaK11BI	GGWCC	1 cut(s)	537
XmaJI	CCTAGG	1 cut(s)	374
XspI	CTAG	3 cut(s)	335, 375, 693
Zsp2I	ATGCAT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.