Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024131.1

Orthogroup ID

OG0009851

Physical Location & Seq

Genomic Coordinates Reverse (-)

22284 .. 22730

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024131.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atgtgttatgacttggcagctgggaagatttcacggcgagtttctctggtgcatttccctgagcccagtgagcttcaagagcgtcaagagcttcaaatggcaaaattccgaaaaaagaatcagatatcgtcctcaatggcattaacccattcttcccagaaaactccttcacgcagtacgagaactacaactactgcaactcctacgcaaagtacgtttcagagaagttcgcgaccaataaatggacgcgcatcctcccctcatagtagtgaacataaaagttctgttagtgaagctggggagcagtcacagctttggaacaaacggcatgcttcccccggtcgaagtcatagtggcgttacttcatcaggacaaggtcgtagttctactactacttcctcaggagaaaggtcatcaaagaaaatcaaggaaaaacataaaagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

16.33

Weight (kDa)

11.17

Isoelectric Point (pI)

92.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64680 AT5G64680 AT5G64680
fragaria_vesca	FvH4_4g22530
malus_domestica	MD13G1131700.v1.1 MD16G1142000.v1.1
prunus_persica	Prupe.1G213900_v2.0.a1
pyrus_communis	pycom16g11250
rosa_chinensis	RchiOBHm_Chr4g0428761
rosa_laevigata	RLG00000002014
rosa_multiflora	Rmu_sc0001300.1_g000001 Rmu_sc0004200.1_g000017 Rmu_sc0010032.1_g000001 Rmu_sc0024131.1_g000004
rosa_roxburghii	Rroxscaffold_4G00308580 Rroxscaffold_5G00370430
rosa_samantha	Rh4AG285500 Rh4BG291500 Rh4CG307300 Rh4DG288600
rosa_wichuraiana	Rw4G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	242
AccII	CGCG	2 cut(s)	232, 249
AcsI	RAATTY	1 cut(s)	104
AfaI	GTAC	2 cut(s)	178, 214
AfiI	CCNNNNNNNGG	1 cut(s)	242
AgsI	TTSAA	2 cut(s)	77, 95
AluBI	AGCT	5 cut(s)	20, 73, 91, 296, 313
AluI	AGCT	5 cut(s)	20, 73, 91, 296, 313
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	251
AsuC2I	CCSGG	1 cut(s)	339
AxyI	CCTNAGG	1 cut(s)	400
BanII	GRGCYC	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	29
BceAI	ACGGC	2 cut(s)	50, 341
BcnI	CCSGG	1 cut(s)	339
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	339
BmrFI	CCNGG	1 cut(s)	339
BmrI	ACTGGG	1 cut(s)	60
BmsI	GCATC	1 cut(s)	260
BmuI	ACTGGG	1 cut(s)	60
Bpu10I	CCTNAGC	1 cut(s)	60
BpuMI	CCSGG	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	337
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	66
Bse21I	CCTNAGG	1 cut(s)	400
BseDI	CCNNGG	1 cut(s)	337
BseGI	GGATG	1 cut(s)	251
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseMII	CTCAG	2 cut(s)	51, 414
BseNI	ACTGG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	29
BseYI	CCCAGC	2 cut(s)	20, 296
Bsh1236I	CGCG	2 cut(s)	232, 249
Bsh1285I	CGRYCG	1 cut(s)	343
BsiEI	CGRYCG	1 cut(s)	343
BsiSI	CCGG	1 cut(s)	339
BslI	CCNNNNNNNGG	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp68I	TCGCGA	1 cut(s)	232
BspCNI	CTCAG	2 cut(s)	52, 413
BspFNI	CGCG	2 cut(s)	232, 249
BsrI	ACTGG	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	337
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	2 cut(s)	60, 400
BstF5I	GGATG	1 cut(s)	251
BstFNI	CGCG	2 cut(s)	232, 249
BstHHI	GCGC	1 cut(s)	251
BstMCI	CGRYCG	1 cut(s)	343
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 79, 88, 310
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	337
BstUI	CGCG	2 cut(s)	232, 249
BstV1I	GCAGC	1 cut(s)	29
Bsu36I	CCTNAGG	1 cut(s)	400
BtsCI	GGATG	1 cut(s)	251
BtsIMutI	CAGTG	1 cut(s)	73
BtuMI	TCGCGA	1 cut(s)	232
Cac8I	GCNNGC	1 cut(s)	330
CfoI	GCGC	1 cut(s)	251
CseI	GACGC	2 cut(s)	71, 255
Csp6I	GTAC	2 cut(s)	177, 213
CviAII	CATG	1 cut(s)	329
CviJI	RGCY	6 cut(s)	20, 64, 73, 91, 296, 313
CviKI_1	RGCY	6 cut(s)	20, 64, 73, 91, 296, 313
CviQI	GTAC	2 cut(s)	177, 213
DdeI	CTNAG	2 cut(s)	60, 400
Eco24I	GRGCYC	1 cut(s)	66
Eco32I	GATATC	1 cut(s)	126
Eco81I	CCTNAGG	1 cut(s)	400
EcoRV	GATATC	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	66
FaeI	CATG	1 cut(s)	332
FaiI	YATR	6 cut(s)	9, 264, 276, 330, 351, 438
FatI	CATG	1 cut(s)	328
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	1 cut(s)	238
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	18
GlaI	GCGC	1 cut(s)	250
GluI	GCNGC	1 cut(s)	18
GsaI	CCCAGC	2 cut(s)	24, 300
HapII	CCGG	1 cut(s)	339
HgaI	GACGC	2 cut(s)	71, 255
HhaI	GCGC	1 cut(s)	251
Hin1II	CATG	1 cut(s)	332
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HinfI	GANTC	1 cut(s)	118
HpaII	CCGG	1 cut(s)	339
Hpy166II	GTNNAC	1 cut(s)	272
Hpy188I	TCNGA	3 cut(s)	110, 123, 222
Hpy188III	TCNNGA	5 cut(s)	77, 86, 231, 369, 402
Hpy8I	GTNNAC	1 cut(s)	272
HpyAV	CCTTC	1 cut(s)	177
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	2 cut(s)	52, 197
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 79, 88, 310
HpyF3I	CTNAG	2 cut(s)	60, 400
HpySE526I	ACGT	1 cut(s)	215
Hsp92II	CATG	1 cut(s)	332
HspAI	GCGC	1 cut(s)	249
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	9 cut(s)	6, 32, 72, 79, 170, 282, 352, 354, 387
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	1 cut(s)	260
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	2 cut(s)	306, 358
MboII	GAAGA	2 cut(s)	37, 144
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	1 cut(s)	104
MnlI	CCTC	4 cut(s)	142, 265, 270, 409
MseI	TTAA	1 cut(s)	143
MslI	CAYNNNNRTG	1 cut(s)	267
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	1 cut(s)	339
MspR9I	CCNGG	1 cut(s)	339
MvnI	CGCG	2 cut(s)	232, 249
MwoI	GCNNNNNNNGC	4 cut(s)	70, 79, 88, 310
NciI	CCSGG	1 cut(s)	339
NlaIII	CATG	1 cut(s)	332
NmuCI	GTSAC	1 cut(s)	306
NruI	TCGCGA	1 cut(s)	232
NspI	RCATGY	1 cut(s)	332
PaeI	GCATGC	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	118
PflFI	GACNNNGTC	1 cut(s)	375
PflMI	CCANNNNNTGG	1 cut(s)	242
PkrI	GCNGC	1 cut(s)	19
PspFI	CCCAGC	2 cut(s)	20, 296
PsrI	GAACNNNNNNTAC	2 cut(s)	175, 207
PsyI	GACNNNGTC	1 cut(s)	375
PvuII	CAGCTG	1 cut(s)	20
RruI	TCGCGA	1 cut(s)	232
RsaI	GTAC	2 cut(s)	178, 214
RsaNI	GTAC	2 cut(s)	177, 213
RseI	CAYNNNNRTG	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	1 cut(s)	18
ScrFI	CCNGG	1 cut(s)	339
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	8 cut(s)	22, 75, 93, 218, 298, 315, 379, 413
SfaNI	GCATC	1 cut(s)	260
SmiMI	CAYNNNNRTG	1 cut(s)	267
SphI	GCATGC	1 cut(s)	332
Sse9I	AATT	1 cut(s)	104
StyD4I	CCNGG	1 cut(s)	337
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	1 cut(s)	343
TasI	AATT	1 cut(s)	104
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	306
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	306
TspDTI	ATGAA	1 cut(s)	354
TspRI	CASTG	1 cut(s)	73
Tth111I	GACNNNGTC	1 cut(s)	375
Van91I	CCANNNNNTGG	1 cut(s)	242
XapI	RAATTY	1 cut(s)	104
XceI	RCATGY	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.