Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009851

Physical Location & Seq

Genomic Coordinates Forward (+)

22736057 .. 22738572

Gene Structure 2516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G213900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGATGCAGATGCTAAGGACGAAGGTTACAAACTTCCACCAGATTTTCAAGAAAATACTAAAGAAGCACTTGTCGATTTCACTGTGACCGACTCCACAGAGCTTTGGCTCATTGATTTGCCTAAAGATCAAAATCCTGATTTTAATGGTGTAGAACTGTCGCTCAAGCTTCATAATGATGGAACGTTGGGCAGTTTTGAGGCTCCATCAGGGAAAGAATATGAAGTGGTCAGTAGTGCTGCTGAGCAAAAGGCTACAGTTTTTGTATCTTCTGCATCGAGCACAAAAATTGCTGGGAAGATTTCACGGAGAGTTTCTTTTGTGCATTACCCAGAGCCTAGTGAGCTTAAAGAAAGATTAAATTCCAAAAGATTGAAAAAAATGTATCAGGAATTACCATCTGGAGTGTTGACCCAATCTTCCAACAATTTTGCAACTCCTACACGAAGTTCAGTGCTGAGAAACTCACAATCAGCAGGTGGACGTTCAGCCTCCACTCATAGTAGCAGACCTAAAAGTTCCATACATAGTGTTGGCGAGCAATCACAGCATCGAAAGAAAAGGCATACACCCGAACCTAGTAGGTCCATGAACCGGTCTTCCCAAAACTCAGGACGAGGTAGTGCAGTCAGTTCCTTGGGACAAGGTAATAGTGGAATCAGTTCCTTAGGAGAAGGTCTTAGTGGGGCTACTTCCTCAGGACAAGGTCACAGTGCATCTAAGTCCTCAGGACAAGGTCATCATAGTAAATCAAGGAAGAAAGTAAAAGATGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

260

Amino Acids

27.82

Weight (kDa)

9.5

Isoelectric Point (pI)

54.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64680 AT5G64680 AT5G64680
fragaria_vesca	FvH4_4g22530
malus_domestica	MD13G1131700.v1.1 MD16G1142000.v1.1
prunus_persica	Prupe.1G213900_v2.0.a1
pyrus_communis	pycom16g11250
rosa_chinensis	RchiOBHm_Chr4g0428761
rosa_laevigata	RLG00000002014
rosa_multiflora	Rmu_sc0001300.1_g000001 Rmu_sc0004200.1_g000017 Rmu_sc0010032.1_g000001 Rmu_sc0024131.1_g000004
rosa_roxburghii	Rroxscaffold_4G00308580 Rroxscaffold_5G00370430
rosa_samantha	Rh4AG285500 Rh4BG291500 Rh4CG307300 Rh4DG288600
rosa_wichuraiana	Rw4G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	467
Acc36I	ACCTGC	1 cut(s)	467
AclI	AACGTT	1 cut(s)	185
AcsI	RAATTY	1 cut(s)	361
AfiI	CCNNNNNNNGG	1 cut(s)	594
AgeI	ACCGGT	1 cut(s)	594
AgsI	TTSAA	2 cut(s)	50, 376
AloI	GAACNNNNNNTCC	2 cut(s)	584, 616
AluBI	AGCT	3 cut(s)	103, 169, 346
AluI	AGCT	3 cut(s)	103, 169, 346
Alw21I	GWGCWC	1 cut(s)	284
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	361
AsiGI	ACCGGT	1 cut(s)	594
Asp700I	GAANNNNTTC	1 cut(s)	661
AspS9I	GGNCC	1 cut(s)	585
AvaII	GGWCC	1 cut(s)	585
AxyI	CCTNAGG	3 cut(s)	667, 697, 727
BbsI	GAAGAC	1 cut(s)	591
Bbv12I	GWGCWC	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	3 cut(s)	173, 214, 406
BfaI	CTAG	2 cut(s)	339, 579
BfmI	CTRYAG	1 cut(s)	255
BfuAI	ACCTGC	1 cut(s)	467
BisI	GCNGC	1 cut(s)	240
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	241
Bme18I	GGWCC	1 cut(s)	585
BmgT120I	GGNCC	1 cut(s)	585
BmiI	GGNNCC	1 cut(s)	204
BmsI	GCATC	3 cut(s)	284, 559, 725
BpiI	GAAGAC	1 cut(s)	591
BpmI	CTGGAG	1 cut(s)	423
Bpu10I	CCTNAGC	1 cut(s)	15
Bpu1102I	GCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	149
BsaBI	GATNNNNATC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	636
BsaWI	WCCGGW	1 cut(s)	594
Bsc4I	CCNNNNNNNGG	1 cut(s)	594
Bse118I	RCCGGY	1 cut(s)	594
Bse21I	CCTNAGG	3 cut(s)	667, 697, 727
Bse8I	GATNNNNATC	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	636
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	132
BseLI	CCNNNNNNNGG	1 cut(s)	594
BseMII	CTCAG	5 cut(s)	234, 449, 624, 711, 741
BseXI	GCAGC	1 cut(s)	226
BseYI	CCCAGC	1 cut(s)	293
BsgI	GTGCAG	1 cut(s)	645
BshTI	ACCGGT	1 cut(s)	594
BsiHKAI	GWGCWC	1 cut(s)	284
BsiSI	CCGG	1 cut(s)	595
BslFI	GGGAC	1 cut(s)	654
BslI	CCNNNNNNNGG	1 cut(s)	594
BsmFI	GGGAC	1 cut(s)	654
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	1 cut(s)	127
Bsp1720I	GCTNAGC	1 cut(s)	243
BspCNI	CTCAG	5 cut(s)	235, 450, 623, 710, 740
BspLI	GGNNCC	1 cut(s)	204
BspMI	ACCTGC	1 cut(s)	467
BsrFI	RCCGGY	1 cut(s)	594
BssAI	RCCGGY	1 cut(s)	594
BssECI	CCNNGG	1 cut(s)	636
BssMI	GATC	1 cut(s)	127
BssT1I	CCWWGG	1 cut(s)	636
Bst4CI	ACNGT	4 cut(s)	85, 159, 259, 713
BstC8I	GCNNGC	1 cut(s)	539
BstDEI	CTNAG	9 cut(s)	15, 243, 458, 610, 667, 680, 697, 720, 727
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	2 cut(s)	343, 547
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	226
BstV2I	GAAGAC	1 cut(s)	591
Bsu36I	CCTNAGG	3 cut(s)	667, 697, 727
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	3 cut(s)	81, 459, 718
BveI	ACCTGC	1 cut(s)	467
Cac8I	GCNNGC	1 cut(s)	539
Cfr10I	RCCGGY	1 cut(s)	594
Cfr13I	GGNCC	1 cut(s)	585
CspAI	ACCGGT	1 cut(s)	594
CviAII	CATG	1 cut(s)	589
CviJI	RGCY	9 cut(s)	103, 109, 169, 203, 254, 337, 346, 491, 689
CviKI_1	RGCY	9 cut(s)	103, 109, 169, 203, 254, 337, 346, 491, 689
DdeI	CTNAG	9 cut(s)	15, 243, 458, 610, 667, 680, 697, 720, 727
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	636
Eco47I	GGWCC	1 cut(s)	585
Eco81I	CCTNAGG	3 cut(s)	667, 697, 727
EcoT14I	CCWWGG	1 cut(s)	636
ErhI	CCWWGG	1 cut(s)	636
FaeI	CATG	1 cut(s)	592
FaiI	YATR	8 cut(s)	174, 222, 501, 524, 528, 567, 590, 744
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FaqI	GGGAC	1 cut(s)	654
FatI	CATG	1 cut(s)	588
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	2 cut(s)	339, 579
GluI	GCNGC	1 cut(s)	240
GsaI	CCCAGC	1 cut(s)	297
GsuI	CTGGAG	1 cut(s)	423
HapII	CCGG	1 cut(s)	595
Hin1II	CATG	1 cut(s)	592
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	2 cut(s)	92, 657
HpaII	CCGG	1 cut(s)	595
Hpy166II	GTNNAC	2 cut(s)	411, 482
Hpy188III	TCNNGA	7 cut(s)	50, 137, 389, 402, 612, 699, 729
Hpy8I	GTNNAC	2 cut(s)	411, 482
HpyAV	CCTTC	2 cut(s)	17, 668
HpyCH4III	ACNGT	4 cut(s)	85, 159, 259, 713
HpyCH4IV	ACGT	2 cut(s)	185, 484
HpyCH4V	TGCA	6 cut(s)	8, 275, 325, 434, 626, 716
HpyF10VI	GCNNNNNNNGC	2 cut(s)	343, 547
HpyF3I	CTNAG	9 cut(s)	15, 243, 458, 610, 667, 680, 697, 720, 727
HpySE526I	ACGT	2 cut(s)	185, 484
Hsp92II	CATG	1 cut(s)	592
Kzo9I	GATC	1 cut(s)	127
LmnI	GCTCC	1 cut(s)	208
Lsp1109I	GCAGC	1 cut(s)	226
LweI	GCATC	3 cut(s)	284, 559, 725
MaeI	CTAG	2 cut(s)	339, 579
MaeII	ACGT	2 cut(s)	185, 484
MaeIII	GTNAC	3 cut(s)	26, 85, 707
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	5 cut(s)	261, 310, 411, 591, 769
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	5 cut(s)	288, 361, 392, 427, 775
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	5 cut(s)	193, 502, 611, 706, 736
MroXI	GAANNNNTTC	1 cut(s)	661
MseI	TTAA	3 cut(s)	144, 348, 359
MslI	CAYNNNNRTG	1 cut(s)	177
MspI	CCGG	1 cut(s)	595
MwoI	GCNNNNNNNGC	2 cut(s)	343, 547
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	1 cut(s)	592
NlaIV	GGNNCC	1 cut(s)	204
NmuCI	GTSAC	2 cut(s)	85, 707
PaqCI	CACCTGC	1 cut(s)	467
PdmI	GAANNNNTTC	1 cut(s)	661
PfeI	GAWTC	1 cut(s)	657
PflFI	GACNNNGTC	2 cut(s)	705, 735
PinAI	ACCGGT	1 cut(s)	594
PkrI	GCNGC	1 cut(s)	241
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
Psp1406I	AACGTT	1 cut(s)	185
PspFI	CCCAGC	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	204
PspPI	GGNCC	1 cut(s)	585
PsyI	GACNNNGTC	2 cut(s)	705, 735
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	3 cut(s)	144, 348, 359
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	1 cut(s)	127
Sau96I	GGNCC	1 cut(s)	585
SchI	GAGTC	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	284
SfaNI	GCATC	3 cut(s)	284, 559, 725
SfcI	CTRYAG	1 cut(s)	255
SinI	GGWCC	1 cut(s)	585
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	5 cut(s)	288, 361, 392, 427, 775
SspMI	CTAG	2 cut(s)	339, 579
StyI	CCWWGG	1 cut(s)	636
TaaI	ACNGT	4 cut(s)	85, 159, 259, 713
TaiI	ACGT	2 cut(s)	188, 487
TaqI	TCGA	3 cut(s)	75, 278, 553
TaqII	GACCGA	1 cut(s)	104
TasI	AATT	5 cut(s)	288, 361, 392, 427, 775
TfiI	GAWTC	1 cut(s)	657
Tru1I	TTAA	3 cut(s)	144, 348, 359
Tru9I	TTAA	3 cut(s)	144, 348, 359
TscAI	CASTG	3 cut(s)	88, 459, 718
TseFI	GTSAC	2 cut(s)	85, 707
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	2 cut(s)	85, 707
TspDTI	ATGAA	3 cut(s)	161, 237, 605
TspGWI	ACGGA	1 cut(s)	322
TspRI	CASTG	3 cut(s)	88, 459, 718
Tth111I	GACNNNGTC	2 cut(s)	705, 735
VpaK11BI	GGWCC	1 cut(s)	585
XapI	RAATTY	1 cut(s)	361
XmnI	GAANNNNTTC	1 cut(s)	661
XspI	CTAG	2 cut(s)	339, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.