Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009851

Physical Location & Seq

Genomic Coordinates Forward (+)

25326056 .. 25329011

Gene Structure 2956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g22530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

AGTTTCCCGTTTCGGCGTGGACCCACCAACAATAGTTTGGGTTCATCACTTGAGAGAGCCCATATAGGGCCCAATACACCAAAGAAGGTGGGCAAAGGGGTGATTTGGAAAAAGCATGAATCGGGGTTTAGCAAATTCCTAATTCTTAGACCGCAGCCGCGTAGGGTGGGTGACAACAGAGAGAGAACACAGAGTGGTGCAGCTAGCAAAGCAACAAGGGTGTTGTTTCCAAACACAACAGAGATAGTGTTTTGTTTGGAAGTGGGAAAAAGAGAAGAGGCAGTGATGGATGAGGAACAAGGCTATAAGCCTCCGGCAGATTTTGAAGAAAATGCTAAAGACCCATTGCTTGATATCAACGTCGACGATTCTACTGAGCTTTGGCTCATTCAGTGGCCTAAAAATCAAAATCCAGATTATGATGGCAAAGAGTTGTCACTTAAGCTGCATGGGAATGGAAAGTTGAGCACTTTTGAAGGCGCATCTGGGAAAGAATATGACCTTGTCAGTTCTTCAATTCAAGAATCAAATGCAACAGTTTTTGTATCTTCTGCCTCAGGCACCAAAATTGCTGGGAAGATTTCACGGCGAGTTTCTCTGGTGCATTACCCCGAGCCTAGTGAGCTTAAAGAGCGTCAAGAGCTTCAAATGGCAAAATCCCGAAAAAAGAGTCAGATATCATCCTCAATGGCATTTACCCATTCTTCCCAGAAAACTCCTTCACGCAGTACAAGAACTACAACTACTGCAACTCCTACTCAAAGTACATTTCAGAGAAGTTCACGACCAATAAATGGAGAAGCTGGGGAGTCGTCACATCTCCAAAACAAAAAGCAAAGGCATACTTCCCCAGGTCGAACTCACAGTGGTGTTACTTCATCAGGACAGGGTCGTAGCACAACTACTACTTCTTCAGGAGAAATGTCATCAAAGAAACATAAGGAAAAACATAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

320

Amino Acids

35.27

Weight (kDa)

9.92

Isoelectric Point (pI)

58.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64680 AT5G64680 AT5G64680
fragaria_vesca	FvH4_4g22530
malus_domestica	MD13G1131700.v1.1 MD16G1142000.v1.1
prunus_persica	Prupe.1G213900_v2.0.a1
pyrus_communis	pycom16g11250
rosa_chinensis	RchiOBHm_Chr4g0428761
rosa_laevigata	RLG00000002014
rosa_multiflora	Rmu_sc0001300.1_g000001 Rmu_sc0004200.1_g000017 Rmu_sc0010032.1_g000001 Rmu_sc0024131.1_g000004
rosa_roxburghii	Rroxscaffold_4G00308580 Rroxscaffold_5G00370430
rosa_samantha	Rh4AG285500 Rh4BG291500 Rh4CG307300 Rh4DG288600
rosa_wichuraiana	Rw4G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	560
AccB7I	CCANNNNNTGG	1 cut(s)	794
AccI	GTMKAC	1 cut(s)	363
AccII	CGCG	1 cut(s)	160
AciI	CCGC	2 cut(s)	152, 158
AcsI	RAATTY	1 cut(s)	134
AcuI	CTGAAG	1 cut(s)	897
AdeI	CACNNNGTG	1 cut(s)	194
AfaI	GTAC	2 cut(s)	730, 766
AfiI	CCNNNNNNNGG	2 cut(s)	66, 794
AflII	CTTAAG	1 cut(s)	440
AgsI	TTSAA	5 cut(s)	326, 476, 516, 521, 647
AjnI	CCWGG	1 cut(s)	850
AleI	CACNNNNGTG	1 cut(s)	867
AluBI	AGCT	6 cut(s)	203, 379, 445, 625, 643, 803
AluI	AGCT	6 cut(s)	203, 379, 445, 625, 643, 803
Alw21I	GWGCWC	1 cut(s)	470
Ama87I	CYCGRG	1 cut(s)	611
AoxI	GGCC	2 cut(s)	68, 395
ApaI	GGGCCC	1 cut(s)	72
ApeKI	GCWGC	3 cut(s)	154, 200, 445
ApoI	RAATTY	1 cut(s)	134
ArsI	GACNNNNNNTTYG	2 cut(s)	655, 687
AspLEI	GCGC	1 cut(s)	482
AspS9I	GGNCC	3 cut(s)	20, 68, 69
AsuHPI	GGTGA	2 cut(s)	112, 182
AsuNHI	GCTAGC	1 cut(s)	203
AvaI	CYCGRG	1 cut(s)	611
AvaII	GGWCC	1 cut(s)	20
AxyI	CCTNAGG	1 cut(s)	556
BaeGI	GKGCMC	1 cut(s)	72
BanI	GGYRCC	1 cut(s)	560
BanII	GRGCYC	2 cut(s)	61, 72
Bbv12I	GWGCWC	1 cut(s)	470
BbvI	GCAGC	3 cut(s)	166, 212, 432
BccI	CCATC	2 cut(s)	280, 416
BceAI	ACGGC	1 cut(s)	602
BciT130I	CCWGG	1 cut(s)	852
BfaI	CTAG	2 cut(s)	204, 618
BfrI	CTTAAG	1 cut(s)	440
BisI	GCNGC	4 cut(s)	155, 158, 201, 446
BlsI	GCNGC	4 cut(s)	156, 159, 202, 447
Bme1390I	CCNGG	1 cut(s)	852
Bme18I	GGWCC	1 cut(s)	20
BmeT110I	CYCGRG	1 cut(s)	611
BmgT120I	GGNCC	3 cut(s)	20, 68, 69
BmiI	GGNNCC	3 cut(s)	22, 70, 562
BmrFI	CCNGG	1 cut(s)	852
BmsI	GCATC	1 cut(s)	491
BmtI	GCTAGC	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	850
BsaXI	ACNNNNNCTCC	2 cut(s)	736, 766
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 794
Bse21I	CCTNAGG	1 cut(s)	556
Bse3DI	GCAATG	1 cut(s)	344
BseBI	CCWGG	1 cut(s)	852
BseDI	CCNNGG	1 cut(s)	850
BseGI	GGATG	2 cut(s)	295, 680
BseLI	CCNNNNNNNGG	2 cut(s)	66, 794
BseMI	GCAATG	1 cut(s)	344
BseMII	CTCAG	2 cut(s)	366, 570
BseSI	GKGCMC	1 cut(s)	72
BseXI	GCAGC	3 cut(s)	166, 212, 432
BseYI	CCCAGC	2 cut(s)	572, 803
BsgI	GTGCAG	1 cut(s)	219
Bsh1236I	CGCG	1 cut(s)	160
BshFI	GGCC	2 cut(s)	70, 397
BshNI	GGYRCC	1 cut(s)	560
BsiHKAI	GWGCWC	1 cut(s)	470
BsiHKCI	CYCGRG	1 cut(s)	611
BsiSI	CCGG	1 cut(s)	314
BslI	CCNNNNNNNGG	2 cut(s)	66, 794
BsnI	GGCC	2 cut(s)	70, 397
BsoBI	CYCGRG	1 cut(s)	611
Bsp120I	GGGCCC	1 cut(s)	68
Bsp1286I	GDGCHC	3 cut(s)	61, 72, 470
BspACI	CCGC	2 cut(s)	152, 158
BspANI	GGCC	2 cut(s)	70, 397
BspCNI	CTCAG	2 cut(s)	367, 569
BspFNI	CGCG	1 cut(s)	160
BspLI	GGNNCC	3 cut(s)	22, 70, 562
BspOI	GCTAGC	1 cut(s)	207
BspT107I	GGYRCC	1 cut(s)	560
BspTI	CTTAAG	1 cut(s)	440
BsrDI	GCAATG	1 cut(s)	344
BssECI	CCNNGG	1 cut(s)	850
Bst2UI	CCWGG	1 cut(s)	852
Bst4CI	ACNGT	2 cut(s)	538, 866
Bst6I	CTCTTC	1 cut(s)	270
BstAFI	CTTAAG	1 cut(s)	440
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	3 cut(s)	146, 375, 556
BstF5I	GGATG	2 cut(s)	295, 680
BstFNI	CGCG	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	482
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 622, 631, 640
BstNI	CCWGG	1 cut(s)	852
BstSCI	CCNGG	1 cut(s)	850
BstSLI	GKGCMC	1 cut(s)	72
BstUI	CGCG	1 cut(s)	160
BstV1I	GCAGC	3 cut(s)	166, 212, 432
Bsu36I	CCTNAGG	1 cut(s)	556
BsuRI	GGCC	2 cut(s)	70, 397
BtsCI	GGATG	2 cut(s)	295, 680
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	3 cut(s)	288, 398, 871
Cac8I	GCNNGC	1 cut(s)	205
CfoI	GCGC	1 cut(s)	482
Cfr13I	GGNCC	3 cut(s)	20, 68, 69
CseI	GACGC	1 cut(s)	623
Csp6I	GTAC	2 cut(s)	729, 765
CspCI	CAANNNNNGTGG	2 cut(s)	69, 104
CviAII	CATG	2 cut(s)	116, 449
CviQI	GTAC	2 cut(s)	729, 765
DdeI	CTNAG	3 cut(s)	146, 375, 556
DraIII	CACNNNGTG	1 cut(s)	194
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco24I	GRGCYC	2 cut(s)	61, 72
Eco32I	GATATC	2 cut(s)	355, 678
Eco47I	GGWCC	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	897
Eco81I	CCTNAGG	1 cut(s)	556
Eco88I	CYCGRG	1 cut(s)	611
EcoO109I	RGGNCCY	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	850
EcoRV	GATATC	2 cut(s)	355, 678
EcoT38I	GRGCYC	2 cut(s)	61, 72
FaeI	CATG	2 cut(s)	119, 452
FalI	AAGNNNNNCTT	2 cut(s)	829, 861
FatI	CATG	2 cut(s)	115, 448
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	4 cut(s)	155, 158, 201, 446
FokI	GGATG	2 cut(s)	302, 667
FriOI	GRGCYC	2 cut(s)	61, 72
Fsp4HI	GCNGC	4 cut(s)	155, 158, 201, 446
FspBI	CTAG	2 cut(s)	204, 618
GlaI	GCGC	1 cut(s)	481
GluI	GCNGC	4 cut(s)	155, 158, 201, 446
GsaI	CCCAGC	2 cut(s)	576, 807
HaeIII	GGCC	2 cut(s)	70, 397
HapII	CCGG	1 cut(s)	314
HgaI	GACGC	1 cut(s)	623
HhaI	GCGC	1 cut(s)	482
Hin1II	CATG	2 cut(s)	119, 452
Hin6I	GCGC	1 cut(s)	480
HinP1I	GCGC	1 cut(s)	480
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HinfI	GANTC	5 cut(s)	119, 368, 524, 670, 809
HpaII	CCGG	1 cut(s)	314
HphI	GGTGA	2 cut(s)	112, 182
Hpy166II	GTNNAC	3 cut(s)	20, 364, 782
Hpy188I	TCNGA	2 cut(s)	675, 774
Hpy188III	TCNNGA	7 cut(s)	413, 521, 638, 660, 783, 882, 915
Hpy8I	GTNNAC	3 cut(s)	20, 364, 782
Hpy99I	CGWCG	2 cut(s)	365, 368
HpyAV	CCTTC	3 cut(s)	79, 470, 729
HpyCH4III	ACNGT	2 cut(s)	538, 866
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	5 cut(s)	200, 448, 533, 604, 749
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 622, 631, 640
HpyF3I	CTNAG	3 cut(s)	146, 375, 556
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	2 cut(s)	119, 452
HspAI	GCGC	1 cut(s)	480
Lsp1109I	GCAGC	3 cut(s)	166, 212, 432
LweI	GCATC	1 cut(s)	491
MaeI	CTAG	2 cut(s)	204, 618
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	4 cut(s)	170, 435, 813, 871
MboII	GAAGA	7 cut(s)	287, 338, 504, 540, 589, 696, 903
MhlI	GDGCHC	3 cut(s)	61, 72, 470
MluCI	AATT	4 cut(s)	134, 141, 516, 567
MlyI	GAGTC	2 cut(s)	679, 818
MnlI	CCTC	5 cut(s)	271, 286, 321, 565, 694
MseI	TTAA	2 cut(s)	441, 627
MslI	CAYNNNNRTG	2 cut(s)	453, 867
MspCI	CTTAAG	1 cut(s)	440
MspI	CCGG	1 cut(s)	314
MspR9I	CCNGG	1 cut(s)	852
MvaI	CCWGG	1 cut(s)	852
MvnI	CGCG	1 cut(s)	160
MwoI	GCNNNNNNNGC	4 cut(s)	209, 622, 631, 640
NheI	GCTAGC	1 cut(s)	203
NlaIII	CATG	2 cut(s)	119, 452
NlaIV	GGNNCC	3 cut(s)	22, 70, 562
NmuCI	GTSAC	3 cut(s)	170, 435, 813
OliI	CACNNNNGTG	1 cut(s)	867
PfeI	GAWTC	3 cut(s)	119, 368, 524
PflFI	GACNNNGTC	2 cut(s)	503, 888
PflMI	CCANNNNNTGG	1 cut(s)	794
PkrI	GCNGC	4 cut(s)	156, 159, 202, 447
PleI	GAGTC	2 cut(s)	678, 817
PpsI	GAGTC	2 cut(s)	678, 817
Psp6I	CCWGG	1 cut(s)	850
PspFI	CCCAGC	2 cut(s)	572, 803
PspGI	CCWGG	1 cut(s)	850
PspN4I	GGNNCC	3 cut(s)	22, 70, 562
PspOMI	GGGCCC	1 cut(s)	68
PspPI	GGNCC	3 cut(s)	20, 68, 69
PsrI	GAACNNNNNNTAC	2 cut(s)	727, 759
PsyI	GACNNNGTC	2 cut(s)	503, 888
RsaI	GTAC	2 cut(s)	730, 766
RsaNI	GTAC	2 cut(s)	729, 765
RseI	CAYNNNNRTG	2 cut(s)	453, 867
SalI	GTCGAC	1 cut(s)	362
SaqAI	TTAA	2 cut(s)	441, 627
SatI	GCNGC	4 cut(s)	155, 158, 201, 446
Sau96I	GGNCC	3 cut(s)	20, 68, 69
SchI	GAGTC	2 cut(s)	679, 818
ScrFI	CCNGG	1 cut(s)	852
SduI	GDGCHC	3 cut(s)	61, 72, 470
SfaNI	GCATC	1 cut(s)	491
SgrDI	CGTCGACG	1 cut(s)	362
SinI	GGWCC	1 cut(s)	20
SmiMI	CAYNNNNRTG	2 cut(s)	453, 867
SmlI	CTYRAG	2 cut(s)	50, 440
SmoI	CTYRAG	2 cut(s)	50, 440
Sse9I	AATT	4 cut(s)	134, 141, 516, 567
SsiI	CCGC	2 cut(s)	152, 158
SspMI	CTAG	2 cut(s)	204, 618
StyD4I	CCNGG	1 cut(s)	850
TaaI	ACNGT	2 cut(s)	538, 866
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	2 cut(s)	363, 856
TasI	AATT	4 cut(s)	134, 141, 516, 567
TatI	WGTACW	2 cut(s)	728, 764
TauI	GCSGC	1 cut(s)	160
TfiI	GAWTC	3 cut(s)	119, 368, 524
Tru1I	TTAA	2 cut(s)	441, 627
Tru9I	TTAA	2 cut(s)	441, 627
TscAI	CASTG	3 cut(s)	288, 398, 871
TseFI	GTSAC	3 cut(s)	170, 435, 813
TseI	GCWGC	3 cut(s)	154, 200, 445
Tsp45I	GTSAC	3 cut(s)	170, 435, 813
TspDTI	ATGAA	3 cut(s)	33, 132, 867
TspRI	CASTG	3 cut(s)	288, 398, 871
Tth111I	GACNNNGTC	2 cut(s)	503, 888
Van91I	CCANNNNNTGG	1 cut(s)	794
Vha464I	CTTAAG	1 cut(s)	440
VpaK11BI	GGWCC	1 cut(s)	20
XapI	RAATTY	1 cut(s)	134
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XmiI	GTMKAC	1 cut(s)	363
XspI	CTAG	2 cut(s)	204, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.