Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0009851

Physical Location & Seq

Genomic Coordinates Reverse (-)

9996188 .. 9998711

Gene Structure 2524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1131700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGAGGCAGGAAGCTCGGGTAAAGTTGGTGAAGGCGAAGGCTACAAACCTCCACCAGAATTTTCCCAAGTTGCTAAAGAACCACTTGTGGATATCAATATGAACGGCTCCACAGAGCTTTGGCTCATTTCTTGGCCGAAAGATCAAAATCCAGATTTTTGCCAAGAAGTTTCGCTCAAGCTTGGCACTGATGGAGAGTTGGGCAGTTTTGTCGGCCCATCTGGCAAAGAATATGATTTGCAAAGTACAGCTCAAAAGCCAGATGCTACAGTTTTTGTATCTTCTGCGTCAGGCACAAAAGTTGCTGGGAAGATTTCACGGAATGTTTCTCTTGTGTTTTACCCGGAGCCCAGTGAACTTGAAGAAAAACTAAAGTCCAAACAGTTGAAGAAAATTCAGCAGATATCAGCTGGAATGTCCCGTTCTCCCCATAGTTTTGCAACTCCTACACGAAGTTCTATGCCGACAATGTCACGGACAGTATGGGGGCTCCCAACCCCCACTCATAGCAGCAGACAAATAAGCTCCATATCTGGTGTTGGAGAGCCATCACAGCTTCGAAAGAAAAGGCGTGCACCTGAACCTACTAGGTCCATGAACCACTCCGGCCAAAATTCAGGACGGCGTAGTGGAGTCACCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

23.12

Weight (kDa)

9.32

Isoelectric Point (pI)

59.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64680 AT5G64680 AT5G64680
fragaria_vesca	FvH4_4g22530
malus_domestica	MD13G1131700.v1.1 MD16G1142000.v1.1
prunus_persica	Prupe.1G213900_v2.0.a1
pyrus_communis	pycom16g11250
rosa_chinensis	RchiOBHm_Chr4g0428761
rosa_laevigata	RLG00000002014
rosa_multiflora	Rmu_sc0001300.1_g000001 Rmu_sc0004200.1_g000017 Rmu_sc0010032.1_g000001 Rmu_sc0024131.1_g000004
rosa_roxburghii	Rroxscaffold_4G00308580 Rroxscaffold_5G00370430
rosa_samantha	Rh4AG285500 Rh4BG291500 Rh4CG307300 Rh4DG288600
rosa_wichuraiana	Rw4G024760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	134, 607
AcsI	RAATTY	3 cut(s)	59, 393, 613
AfaI	GTAC	1 cut(s)	247
AgsI	TTSAA	2 cut(s)	362, 388
AluBI	AGCT	7 cut(s)	15, 118, 181, 251, 410, 525, 556
AluI	AGCT	7 cut(s)	15, 118, 181, 251, 410, 525, 556
Alw21I	GWGCWC	1 cut(s)	577
Alw44I	GTGCAC	1 cut(s)	573
Ama87I	CYCGRG	1 cut(s)	16
AoxI	GGCC	3 cut(s)	134, 214, 607
ApaLI	GTGCAC	1 cut(s)	573
ApeKI	GCWGC	1 cut(s)	510
ApoI	RAATTY	3 cut(s)	59, 393, 613
AspS9I	GGNCC	2 cut(s)	215, 591
AsuC2I	CCSGG	1 cut(s)	344
AsuHPI	GGTGA	2 cut(s)	41, 628
AsuII	TTCGAA	1 cut(s)	559
AvaI	CYCGRG	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	591
BaeGI	GKGCMC	1 cut(s)	577
BanII	GRGCYC	2 cut(s)	351, 492
Bbv12I	GWGCWC	1 cut(s)	577
BbvI	GCAGC	1 cut(s)	522
BccI	CCATC	3 cut(s)	185, 226, 556
BceAI	ACGGC	2 cut(s)	121, 638
BcgI	CGANNNNNNTGC	3 cut(s)	31, 193, 227
BcnI	CCSGG	1 cut(s)	344
BfaI	CTAG	1 cut(s)	588
BfmI	CTRYAG	1 cut(s)	267
BglI	GCCNNNNNGGC	1 cut(s)	222
BisI	GCNGC	1 cut(s)	511
BlsI	GCNGC	1 cut(s)	512
Bme1390I	CCNGG	1 cut(s)	344
Bme18I	GGWCC	1 cut(s)	591
BmeT110I	CYCGRG	1 cut(s)	16
BmgT120I	GGNCC	2 cut(s)	215, 591
BmiI	GGNNCC	3 cut(s)	109, 348, 491
BmrFI	CCNGG	1 cut(s)	344
BmrI	ACTGGG	1 cut(s)	345
BmsI	GCATC	1 cut(s)	253
BmuI	ACTGGG	1 cut(s)	345
Bpu14I	TTCGAA	1 cut(s)	559
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	344
BsaBI	GATNNNNATC	1 cut(s)	147
Bse1I	ACTGG	1 cut(s)	351
Bse8I	GATNNNNATC	1 cut(s)	147
BseJI	GATNNNNATC	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	351
BseSI	GKGCMC	1 cut(s)	577
BseXI	GCAGC	1 cut(s)	522
BseYI	CCCAGC	1 cut(s)	305
BshFI	GGCC	3 cut(s)	136, 216, 609
BsiHKAI	GWGCWC	1 cut(s)	577
BsiHKCI	CYCGRG	1 cut(s)	16
BsiSI	CCGG	2 cut(s)	344, 606
BslFI	GGGAC	1 cut(s)	403
BsmFI	GGGAC	1 cut(s)	403
BsnI	GGCC	3 cut(s)	136, 216, 609
BsoBI	CYCGRG	1 cut(s)	16
Bsp119I	TTCGAA	1 cut(s)	559
Bsp1286I	GDGCHC	3 cut(s)	351, 492, 577
Bsp143I	GATC	1 cut(s)	142
BspANI	GGCC	3 cut(s)	136, 216, 609
BspLI	GGNNCC	3 cut(s)	109, 348, 491
BspT104I	TTCGAA	1 cut(s)	559
BsrI	ACTGG	1 cut(s)	351
BssMI	GATC	1 cut(s)	142
Bst4CI	ACNGT	3 cut(s)	271, 384, 481
BstBI	TTCGAA	1 cut(s)	559
BstC8I	GCNNGC	1 cut(s)	573
BstKTI	GATC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	2 cut(s)	222, 553
BstSCI	CCNGG	1 cut(s)	342
BstSFI	CTRYAG	1 cut(s)	267
BstSLI	GKGCMC	1 cut(s)	577
BstV1I	GCAGC	1 cut(s)	522
BsuRI	GGCC	3 cut(s)	136, 216, 609
BtsIMutI	CAGTG	2 cut(s)	186, 358
Cac8I	GCNNGC	1 cut(s)	573
Cfr13I	GGNCC	2 cut(s)	215, 591
CseI	GACGC	1 cut(s)	276
Csp6I	GTAC	1 cut(s)	246
CviAII	CATG	1 cut(s)	595
CviQI	GTAC	1 cut(s)	246
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
EaeI	YGGCCR	2 cut(s)	134, 607
Eco24I	GRGCYC	2 cut(s)	351, 492
Eco32I	GATATC	2 cut(s)	94, 405
Eco47I	GGWCC	1 cut(s)	591
Eco88I	CYCGRG	1 cut(s)	16
EcoRV	GATATC	2 cut(s)	94, 405
EcoT38I	GRGCYC	2 cut(s)	351, 492
FaeI	CATG	1 cut(s)	598
FaiI	YATR	8 cut(s)	101, 234, 432, 461, 484, 507, 530, 596
FalI	AAGNNNNNCTT	2 cut(s)	69, 101
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	1 cut(s)	594
Fnu4HI	GCNGC	1 cut(s)	511
FriOI	GRGCYC	2 cut(s)	351, 492
Fsp4HI	GCNGC	1 cut(s)	511
FspBI	CTAG	1 cut(s)	588
GluI	GCNGC	1 cut(s)	511
GsaI	CCCAGC	1 cut(s)	309
HaeIII	GGCC	3 cut(s)	136, 216, 609
HapII	CCGG	2 cut(s)	344, 606
HgaI	GACGC	1 cut(s)	276
Hin1II	CATG	1 cut(s)	598
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	1 cut(s)	633
HpaII	CCGG	2 cut(s)	344, 606
HphI	GGTGA	2 cut(s)	41, 628
Hpy166II	GTNNAC	2 cut(s)	356, 575
Hpy188III	TCNNGA	2 cut(s)	152, 618
Hpy8I	GTNNAC	2 cut(s)	356, 575
HpyAV	CCTTC	2 cut(s)	26, 32
HpyCH4III	ACNGT	3 cut(s)	271, 384, 481
HpyCH4V	TGCA	3 cut(s)	241, 440, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	222, 553
Hsp92II	CATG	1 cut(s)	598
Kzo9I	GATC	1 cut(s)	142
LmnI	GCTCC	4 cut(s)	113, 346, 495, 530
Lsp1109I	GCAGC	1 cut(s)	522
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	1 cut(s)	588
MaeIII	GTNAC	2 cut(s)	471, 634
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	4 cut(s)	273, 322, 374, 400
MhlI	GDGCHC	3 cut(s)	351, 492, 577
MluCI	AATT	3 cut(s)	59, 393, 613
MlyI	GAGTC	1 cut(s)	642
MmeI	TCCRAC	1 cut(s)	520
MnlI	CCTC	1 cut(s)	60
MspA1I	CMGCKG	1 cut(s)	410
MspI	CCGG	2 cut(s)	344, 606
MspR9I	CCNGG	1 cut(s)	344
MwoI	GCNNNNNNNGC	2 cut(s)	222, 553
NciI	CCSGG	1 cut(s)	344
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	1 cut(s)	598
NlaIV	GGNNCC	3 cut(s)	109, 348, 491
NmuCI	GTSAC	2 cut(s)	471, 634
NspV	TTCGAA	1 cut(s)	559
PflFI	GACNNNGTC	1 cut(s)	469
PkrI	GCNGC	1 cut(s)	512
PleI	GAGTC	1 cut(s)	641
PpsI	GAGTC	1 cut(s)	641
PspFI	CCCAGC	1 cut(s)	305
PspN4I	GGNNCC	3 cut(s)	109, 348, 491
PspPI	GGNCC	2 cut(s)	215, 591
PsyI	GACNNNGTC	1 cut(s)	469
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
SatI	GCNGC	1 cut(s)	511
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	2 cut(s)	215, 591
SchI	GAGTC	1 cut(s)	642
ScrFI	CCNGG	1 cut(s)	344
SduI	GDGCHC	3 cut(s)	351, 492, 577
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	1 cut(s)	267
SfuI	TTCGAA	1 cut(s)	559
SinI	GGWCC	1 cut(s)	591
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	3 cut(s)	59, 393, 613
SspMI	CTAG	1 cut(s)	588
StyD4I	CCNGG	1 cut(s)	342
TaaI	ACNGT	3 cut(s)	271, 384, 481
TaqI	TCGA	1 cut(s)	559
TasI	AATT	3 cut(s)	59, 393, 613
TatI	WGTACW	1 cut(s)	245
TscAI	CASTG	2 cut(s)	193, 358
TseFI	GTSAC	2 cut(s)	471, 634
TseI	GCWGC	1 cut(s)	510
Tsp45I	GTSAC	2 cut(s)	471, 634
TspDTI	ATGAA	2 cut(s)	116, 611
TspGWI	ACGGA	2 cut(s)	334, 490
TspRI	CASTG	2 cut(s)	193, 358
Tth111I	GACNNNGTC	1 cut(s)	469
VneI	GTGCAC	1 cut(s)	573
VpaK11BI	GGWCC	1 cut(s)	591
XapI	RAATTY	3 cut(s)	59, 393, 613
XspI	CTAG	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.