Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008768

Physical Location & Seq

Genomic Coordinates Forward (+)

25910015 .. 25912900

Gene Structure 2886 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G64813.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGAAGTTTTGGAGGGAACGTGAAAGGGAAAATAAGGAGCAGATCTTAGCGCCATTATGTGGGCAAGTTCGAGTGTTGGTAGTTGGTGACTCAGGTGTTGGAAAAACATCACTTGTACACCTCATCAACAAAGGTTCTTCTATTGTTCGCCCACCTCAAACGATTGGATGCACTGTTGGTGTCAAGCACATAACCTACGGGAGTCCAGCTAGTTCTTCAAGTAGCATTCAAGGTGACTCAGAGAGAGATTTCTTTGTTGAACTCTGGGATGTATCAGGGCATGAGAGATACAAAGATTGCCGGTCACTGTTCTATTCACAAATCAATGGAGTTATTTTTGTTCACGATCTCTCTCAAAGAAGAACAAAAACGAGCTTGCAGAAATGGGCATCTGAGGTTGCAGCGACTGGGACTTTTTCAGCTCCTCTTCCCTCGGGAGGTCCCGGTGGTCTTCCTGTTCCATACATTGTAGTTGGCAACAAAGCAGATATTGCTGCAAAAGAAGGAACAAAAGGAAGCAGTGGAAATCTTGTTGATGCAGCTCGTCATTGGGTTGAGAAGCAAGGTTTGCTTCCTTCTTCAAGTGAGGATCTCCCTCTCTTTGAAAGCTTTCCTGGTAATGGCGGTCTCATAGCGGCTGCCAAAGAAACCAGATACGATAAGGAAGCTTTGAACAAATTTTTCCGGATGTTGATAAGAAGAAGATATTTCTCAGATGAACTGCCAGCAGCTTCACCATGGTCTATTTCGCCGGTTCCAACGTCATCATCGCAACGGTTAGACGAGATTACAAGTGATGATGATCAATTTTACAAGCGAACAAGTTTCCATGGAGATCCATACAAGTACAACAACACAATACCACCACTTCCAGCACAACGCAACCTAACTCCGCCTCCCACGCTCTATCCGCAACAACCAGTGTCCACCCCTGATAACTACACCATTCCGAGATACTCTCTTTCCAGTGTACAAGAAACAACCAACAATGGCAGTGCCAGGTCAAAGCGAATGGATATTAACGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0010468 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019222 GO:0032501 GO:0032502 GO:0032922 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048856 GO:0050789 GO:0050896 GO:0060255 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras Roc

Protein Analysis

342

Amino Acids

37.74

Weight (kDa)

8.97

Isoelectric Point (pI)

55.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	22 - 121	2.6e-06	ADP-ribosylation factor family
Roc	PF08477	24 - 137	5e-16	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	24 - 173	4e-16	Ras family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64813 AT5G64813 AT5G64813
fragaria_vesca	FvH4_1g22810
malus_domestica	MD08G1250200.v1.1 MD15G1445400.v1.1
prunus_persica	Prupe.1G587300_v2.0.a1 Prupe.1G587300_v2.0.a1 Prupe.1G587300_v2.0.a1 Prupe.1G587300_v2.0.a1 Prupe.1G587300_v2.0.a1
pyrus_communis	pycom08g21700 pycom15g39230
rosa_chinensis	RchiOBHm_Chr2g0117121
rosa_laevigata	RLG00000018332
rosa_multiflora	Rmu_sc0005833.1_g000006
rosa_roxburghii	Rroxscaffold_2G00126690
rosa_rugosa	Rorug02G0210700
rosa_samantha	Rh2AG266400 Rh2BG278800 Rh2DG273600 Rh2DG292700
rosa_wichuraiana	Rw2G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	59
AccIII	TCCGGA	1 cut(s)	684
AciI	CCGC	4 cut(s)	624, 635, 893, 911
AclWI	GGATC	2 cut(s)	597, 830
AcsI	RAATTY	1 cut(s)	677
AfaI	GTAC	3 cut(s)	117, 848, 972
AfiI	CCNNNNNNNGG	3 cut(s)	59, 437, 620
AgsI	TTSAA	6 cut(s)	219, 230, 260, 582, 605, 673
AjnI	CCWGG	2 cut(s)	613, 998
AluBI	AGCT	7 cut(s)	209, 375, 422, 542, 609, 668, 731
AluI	AGCT	7 cut(s)	209, 375, 422, 542, 609, 668, 731
Alw26I	GTCTC	1 cut(s)	632
AlwI	GGATC	2 cut(s)	597, 830
AlwNI	CAGNNNCTG	1 cut(s)	407
Ama87I	CYCGRG	1 cut(s)	433
Aor13HI	TCCGGA	1 cut(s)	684
ApeKI	GCWGC	5 cut(s)	401, 494, 539, 638, 728
ApoI	RAATTY	1 cut(s)	677
Asp700I	GAANNNNTTC	1 cut(s)	609
AspLEI	GCGC	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	440
AsuC2I	CCSGG	1 cut(s)	444
AsuHPI	GGTGA	3 cut(s)	98, 245, 726
AvaI	CYCGRG	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	440
BbsI	GAAGAC	1 cut(s)	443
BbvI	GCAGC	5 cut(s)	413, 481, 551, 625, 740
BciT130I	CCWGG	2 cut(s)	615, 1000
BclI	TGATCA	1 cut(s)	802
BcnI	CCSGG	1 cut(s)	444
BcoDI	GTCTC	1 cut(s)	632
BfaI	CTAG	1 cut(s)	210
BfoI	RGCGCY	1 cut(s)	53
BglII	AGATCT	1 cut(s)	42
BisI	GCNGC	6 cut(s)	402, 495, 540, 636, 639, 729
BlsI	GCNGC	6 cut(s)	403, 496, 541, 637, 640, 730
Bme1390I	CCNGG	3 cut(s)	444, 615, 1000
Bme18I	GGWCC	1 cut(s)	440
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	440
BmiI	GGNNCC	2 cut(s)	442, 756
BmrFI	CCNGG	3 cut(s)	444, 615, 1000
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	3 cut(s)	158, 398, 526
BmuI	ACTGGG	1 cut(s)	417
BpiI	GAAGAC	1 cut(s)	443
BplI	GAGNNNNNCTC	2 cut(s)	943, 975
BpuMI	CCSGG	1 cut(s)	444
BsaBI	GATNNNNATC	1 cut(s)	801
BsaI	GGTCTC	1 cut(s)	632
BsaJI	CCNNGG	3 cut(s)	432, 737, 829
BsaWI	WCCGGW	1 cut(s)	684
BsaXI	ACNNNNNCTCC	3 cut(s)	34, 880, 910
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 437, 620
Bse118I	RCCGGY	2 cut(s)	300, 751
Bse1I	ACTGG	3 cut(s)	412, 920, 966
Bse8I	GATNNNNATC	1 cut(s)	801
BseAI	TCCGGA	1 cut(s)	684
BseBI	CCWGG	2 cut(s)	615, 1000
BseDI	CCNNGG	3 cut(s)	432, 737, 829
BseGI	GGATG	3 cut(s)	173, 274, 693
BseJI	GATNNNNATC	1 cut(s)	801
BseLI	CCNNNNNNNGG	3 cut(s)	59, 437, 620
BseMII	CTCAG	4 cut(s)	105, 252, 384, 726
BseNI	ACTGG	3 cut(s)	412, 920, 966
BseRI	GAGGAG	1 cut(s)	414
BseXI	GCAGC	5 cut(s)	413, 481, 551, 625, 740
BsiHKCI	CYCGRG	1 cut(s)	433
BsiSI	CCGG	4 cut(s)	301, 444, 685, 752
BslFI	GGGAC	2 cut(s)	424, 426
BslI	CCNNNNNNNGG	3 cut(s)	59, 437, 620
BsmAI	GTCTC	1 cut(s)	632
BsmFI	GGGAC	2 cut(s)	424, 426
BsmI	GAATGC	1 cut(s)	225
Bso31I	GGTCTC	1 cut(s)	632
BsoBI	CYCGRG	1 cut(s)	433
Bsp13I	TCCGGA	1 cut(s)	684
Bsp1407I	TGTACA	2 cut(s)	115, 970
Bsp143I	GATC	5 cut(s)	42, 346, 589, 802, 835
Bsp19I	CCATGG	2 cut(s)	737, 829
BspACI	CCGC	4 cut(s)	624, 635, 893, 911
BspCNI	CTCAG	4 cut(s)	104, 251, 385, 725
BspEI	TCCGGA	1 cut(s)	684
BspLI	GGNNCC	2 cut(s)	442, 756
BspPI	GGATC	2 cut(s)	597, 830
BspTNI	GGTCTC	1 cut(s)	632
BsrFI	RCCGGY	2 cut(s)	300, 751
BsrGI	TGTACA	2 cut(s)	115, 970
BsrI	ACTGG	3 cut(s)	412, 920, 966
BssAI	RCCGGY	2 cut(s)	300, 751
BssECI	CCNNGG	3 cut(s)	432, 737, 829
BssMI	GATC	5 cut(s)	42, 346, 589, 802, 835
BssT1I	CCWWGG	2 cut(s)	737, 829
Bst2UI	CCWGG	2 cut(s)	615, 1000
Bst4CI	ACNGT	3 cut(s)	175, 309, 777
Bst6I	CTCTTC	1 cut(s)	432
BstAPI	GCANNNNNTGC	2 cut(s)	491, 568
BstAUI	TGTACA	2 cut(s)	115, 970
BstC8I	GCNNGC	2 cut(s)	377, 726
BstDEI	CTNAG	5 cut(s)	46, 91, 238, 393, 712
BstDSI	CCRYGG	2 cut(s)	737, 829
BstF5I	GGATG	3 cut(s)	173, 274, 693
BstH2I	RGCGCY	1 cut(s)	53
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	5 cut(s)	45, 349, 592, 805, 838
BstMAI	GTCTC	1 cut(s)	632
BstMBI	GATC	5 cut(s)	42, 346, 589, 802, 835
BstMWI	GCNNNNNNNGC	4 cut(s)	491, 568, 901, 910
BstNI	CCWGG	2 cut(s)	615, 1000
BstSCI	CCNGG	3 cut(s)	442, 613, 998
BstV1I	GCAGC	5 cut(s)	413, 481, 551, 625, 740
BstV2I	GAAGAC	1 cut(s)	443
BstX2I	RGATCY	3 cut(s)	42, 589, 835
BstYI	RGATCY	3 cut(s)	42, 589, 835
BtgI	CCRYGG	2 cut(s)	737, 829
BtgZI	GCGATG	1 cut(s)	753
BtsCI	GGATG	3 cut(s)	173, 274, 693
BtsI	GCAGTG	2 cut(s)	526, 1000
BtsIMutI	CAGTG	6 cut(s)	171, 305, 526, 927, 973, 1000
Cac8I	GCNNGC	2 cut(s)	377, 726
CaiI	CAGNNNCTG	1 cut(s)	407
CfoI	GCGC	1 cut(s)	52
Cfr10I	RCCGGY	2 cut(s)	300, 751
Cfr13I	GGNCC	1 cut(s)	440
Csp6I	GTAC	3 cut(s)	116, 847, 971
CviAII	CATG	3 cut(s)	281, 738, 830
CviJI	RGCY	8 cut(s)	209, 375, 422, 542, 609, 638, 668, 731
CviKI_1	RGCY	8 cut(s)	209, 375, 422, 542, 609, 638, 668, 731
CviQI	GTAC	3 cut(s)	116, 847, 971
DdeI	CTNAG	5 cut(s)	46, 91, 238, 393, 712
DpnI	GATC	5 cut(s)	44, 348, 591, 804, 837
DpnII	GATC	5 cut(s)	42, 346, 589, 802, 835
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
EciI	GGCGGA	1 cut(s)	882
Eco130I	CCWWGG	2 cut(s)	737, 829
Eco31I	GGTCTC	1 cut(s)	632
Eco47I	GGWCC	1 cut(s)	440
Eco88I	CYCGRG	1 cut(s)	433
EcoO109I	RGGNCCY	1 cut(s)	440
EcoRII	CCWGG	2 cut(s)	613, 998
EcoT14I	CCWWGG	2 cut(s)	737, 829
ErhI	CCWWGG	2 cut(s)	737, 829
FaeI	CATG	3 cut(s)	284, 741, 833
FaiI	YATR	8 cut(s)	58, 191, 282, 463, 632, 739, 831, 841
FalI	AAGNNNNNCTT	2 cut(s)	555, 587
FaqI	GGGAC	2 cut(s)	424, 426
FatI	CATG	3 cut(s)	280, 737, 829
FbaI	TGATCA	1 cut(s)	802
Fnu4HI	GCNGC	6 cut(s)	402, 495, 540, 636, 639, 729
FokI	GGATG	3 cut(s)	180, 281, 700
Fsp4HI	GCNGC	6 cut(s)	402, 495, 540, 636, 639, 729
FspBI	CTAG	1 cut(s)	210
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	6 cut(s)	402, 495, 540, 636, 639, 729
HaeII	RGCGCY	1 cut(s)	53
HapII	CCGG	4 cut(s)	301, 444, 685, 752
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	3 cut(s)	284, 741, 833
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HindIII	AAGCTT	2 cut(s)	607, 666
HinfI	GANTC	3 cut(s)	89, 202, 236
HpaII	CCGG	4 cut(s)	301, 444, 685, 752
HphI	GGTGA	3 cut(s)	98, 245, 726
Hpy166II	GTNNAC	4 cut(s)	118, 343, 927, 971
Hpy188I	TCNGA	5 cut(s)	241, 394, 715, 951, 1028
Hpy188III	TCNNGA	3 cut(s)	344, 435, 685
Hpy8I	GTNNAC	4 cut(s)	118, 343, 927, 971
HpyAV	CCTTC	2 cut(s)	497, 585
HpyCH4III	ACNGT	3 cut(s)	175, 309, 777
HpyCH4IV	ACGT	3 cut(s)	19, 761, 1023
HpyCH4V	TGCA	5 cut(s)	171, 379, 401, 497, 539
HpyF10VI	GCNNNNNNNGC	4 cut(s)	491, 568, 901, 910
HpyF3I	CTNAG	5 cut(s)	46, 91, 238, 393, 712
HpySE526I	ACGT	3 cut(s)	19, 761, 1023
Hsp92II	CATG	3 cut(s)	284, 741, 833
HspAI	GCGC	1 cut(s)	50
Kpn2I	TCCGGA	1 cut(s)	684
Ksp22I	TGATCA	1 cut(s)	802
Kzo9I	GATC	5 cut(s)	42, 346, 589, 802, 835
LmnI	GCTCC	2 cut(s)	37, 427
Lsp1109I	GCAGC	5 cut(s)	413, 481, 551, 625, 740
LweI	GCATC	3 cut(s)	158, 398, 526
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	3 cut(s)	19, 761, 1023
MaeIII	GTNAC	3 cut(s)	86, 233, 303
MalI	GATC	5 cut(s)	44, 348, 591, 804, 837
MboI	GATC	5 cut(s)	42, 346, 589, 802, 835
MboII	GAAGA	8 cut(s)	129, 207, 372, 419, 443, 570, 711, 714
MflI	RGATCY	3 cut(s)	42, 589, 835
MluCI	AATT	2 cut(s)	677, 806
MlyI	GAGTC	3 cut(s)	83, 211, 230
MmeI	TCCRAC	2 cut(s)	79, 782
MroI	TCCGGA	1 cut(s)	684
MroXI	GAANNNNTTC	1 cut(s)	609
MseI	TTAA	1 cut(s)	1020
MspI	CCGG	4 cut(s)	301, 444, 685, 752
MspR9I	CCNGG	3 cut(s)	444, 615, 1000
Mva1269I	GAATGC	1 cut(s)	225
MvaI	CCWGG	2 cut(s)	615, 1000
MwoI	GCNNNNNNNGC	4 cut(s)	491, 568, 901, 910
NciI	CCSGG	1 cut(s)	444
NcoI	CCATGG	2 cut(s)	737, 829
NdeII	GATC	5 cut(s)	42, 346, 589, 802, 835
NlaIII	CATG	3 cut(s)	284, 741, 833
NlaIV	GGNNCC	2 cut(s)	442, 756
NmuCI	GTSAC	3 cut(s)	86, 233, 303
PctI	GAATGC	1 cut(s)	225
PdmI	GAANNNNTTC	1 cut(s)	609
PflMI	CCANNNNNTGG	1 cut(s)	59
PkrI	GCNGC	6 cut(s)	403, 496, 541, 637, 640, 730
PleI	GAGTC	3 cut(s)	83, 210, 230
PpsI	GAGTC	3 cut(s)	83, 210, 230
PpuMI	RGGWCCY	1 cut(s)	440
Psp5II	RGGWCCY	1 cut(s)	440
Psp6I	CCWGG	2 cut(s)	613, 998
PspGI	CCWGG	2 cut(s)	613, 998
PspN4I	GGNNCC	2 cut(s)	442, 756
PspPI	GGNCC	1 cut(s)	440
PspPPI	RGGWCCY	1 cut(s)	440
PstNI	CAGNNNCTG	1 cut(s)	407
PsuI	RGATCY	3 cut(s)	42, 589, 835
RsaI	GTAC	3 cut(s)	117, 848, 972
RsaNI	GTAC	3 cut(s)	116, 847, 971
SaqAI	TTAA	1 cut(s)	1020
SatI	GCNGC	6 cut(s)	402, 495, 540, 636, 639, 729
Sau3AI	GATC	5 cut(s)	42, 346, 589, 802, 835
Sau96I	GGNCC	1 cut(s)	440
SchI	GAGTC	3 cut(s)	83, 211, 230
ScrFI	CCNGG	3 cut(s)	444, 615, 1000
SfaNI	GCATC	3 cut(s)	158, 398, 526
SinI	GGWCC	1 cut(s)	440
Sse9I	AATT	2 cut(s)	677, 806
SsiI	CCGC	4 cut(s)	624, 635, 893, 911
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	3 cut(s)	442, 613, 998
StyI	CCWWGG	2 cut(s)	737, 829
TaaI	ACNGT	3 cut(s)	175, 309, 777
TaiI	ACGT	3 cut(s)	22, 764, 1026
TaqI	TCGA	1 cut(s)	70
TasI	AATT	2 cut(s)	677, 806
TatI	WGTACW	3 cut(s)	115, 846, 970
TauI	GCSGC	1 cut(s)	638
Tru1I	TTAA	1 cut(s)	1020
Tru9I	TTAA	1 cut(s)	1020
TscAI	CASTG	6 cut(s)	178, 312, 526, 927, 973, 1000
TseFI	GTSAC	3 cut(s)	86, 233, 303
TseI	GCWGC	5 cut(s)	401, 494, 539, 638, 728
Tsp45I	GTSAC	3 cut(s)	86, 233, 303
TspDTI	ATGAA	2 cut(s)	17, 732
TspRI	CASTG	6 cut(s)	178, 312, 526, 927, 973, 1000
Van91I	CCANNNNNTGG	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	440
XapI	RAATTY	1 cut(s)	677
XmnI	GAANNNNTTC	1 cut(s)	609
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.