Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008768

Physical Location & Seq

Genomic Coordinates Reverse (-)

30417988 .. 30426426

Gene Structure 8439 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG278800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTTCTGGAGGGAACGTGAGAGGGAGAACAAAGATCAAAACGGGAGTGGGCCGCCTTCTGGGCAGGTTCGAGTTCTTGTTGTTGGTGACTCAGGTGTTGGAAAAACTTCTCTTGTTCATCTGATTGTCAACGGTTCTTCCACTGCCCACCCTCCTCAAACAGTAGGATGTTCAGTTGGTGTAAAGCACACTACTTATGGGAATTCTGGTAGCTCGTCAAGCAGCATTAAAGGTGATGCTGAGAGGGAATTCTTTATAGAACTCTGGGATATATGTGGACATGATAGATACAAAGAATGCCGGTCTCTTTTTTATTCCCAAATAAATGGTGTAATCTTTGTTCATGATCTCTCCCAAAGAAGGACAAAAACTGGCTTGCACAAGTGGGCAGCTGAGATTTCTGCAACTGGGTCATTTTCAGCTCCTCTAGGATCAGGGGGTCCTGGTGGCCTTCCTGTCCCGTATATTGTTATTGGTAACAAAGCAGACATTGCTGCAAAGGAGGGTACAAGGGGAAGCAGTGGCAATCTTGTTGACGTTGCCCGACAGTGGGTTGAGAAGCAAGGTTTGCTTCCATCGAGTGAGGAACTTCCACTGACTGAAAGTTTTCCTGGAGCTGGAGGCCTTATTGCGGCTGCCAAAGAAGCAAGATATGACAAGGAAGCTGTGATGAAATTCTTCCGAATGGTCTGTATTTCTCTGCTTGTTCTTGTTAGCTTATATGTTTTGTCTCAAGACAAATGTCCAACTCTTCTGTTGCGCTGGTTTCAGTTGATTAGGAGAAGATATTTTTCTGATGATTTACCTGCACAAAGTCCATGGTCTATTTCTCCGGTTGCAAGTCCTGCGCAGACAGTAGATGAAAATTGGAGTGATGAGGATCATTCATACAGGAAGAAGAGCAGGTACTTCCTGCAAGTTACAATTTTCTCTCAAGCTTGTTTAATGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0010468 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019222 GO:0032501 GO:0032502 GO:0032922 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048856 GO:0050789 GO:0050896 GO:0060255 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras Roc

Protein Analysis

317

Amino Acids

34.85

Weight (kDa)

8.46

Isoelectric Point (pI)

48.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Roc	PF08477	24 - 137	3.7e-17	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	24 - 170	6.3e-16	Ras family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64813 AT5G64813 AT5G64813
fragaria_vesca	FvH4_1g22810
malus_domestica	MD08G1250200.v1.1 MD15G1445400.v1.1
prunus_persica	Prupe.1G587300_v2.0.a1 Prupe.1G587300_v2.0.a1 Prupe.1G587300_v2.0.a1 Prupe.1G587300_v2.0.a1 Prupe.1G587300_v2.0.a1
pyrus_communis	pycom08g21700 pycom15g39230
rosa_chinensis	RchiOBHm_Chr2g0117121
rosa_laevigata	RLG00000018332
rosa_multiflora	Rmu_sc0005833.1_g000006
rosa_roxburghii	Rroxscaffold_2G00126690
rosa_rugosa	Rorug02G0210700
rosa_samantha	Rh2AG266400 Rh2BG278800 Rh2DG273600 Rh2DG292700
rosa_wichuraiana	Rw2G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	849
Acc36I	ACCTGC	3 cut(s)	55, 814, 894
AciI	CCGC	2 cut(s)	53, 632
AclWI	GGATC	2 cut(s)	439, 888
AcsI	RAATTY	3 cut(s)	202, 248, 674
AfaI	GTAC	2 cut(s)	508, 908
AfiI	CCNNNNNNNGG	6 cut(s)	59, 360, 549, 550, 617, 631
AjnI	CCWGG	2 cut(s)	442, 610
AluBI	AGCT	7 cut(s)	213, 392, 422, 617, 665, 717, 938
AluI	AGCT	7 cut(s)	213, 392, 422, 617, 665, 717, 938
Alw26I	GTCTC	2 cut(s)	309, 735
AlwI	GGATC	2 cut(s)	439, 888
AoxI	GGCC	3 cut(s)	50, 448, 622
ApeKI	GCWGC	4 cut(s)	222, 389, 494, 635
ApoI	RAATTY	3 cut(s)	202, 248, 674
Asp700I	GAANNNNTTC	3 cut(s)	106, 606, 677
AspLEI	GCGC	2 cut(s)	762, 850
AspS9I	GGNCC	2 cut(s)	50, 440
AsuHPI	GGTGA	2 cut(s)	98, 245
AvaII	GGWCC	1 cut(s)	440
BarI	GAAGNNNNNNTAC	2 cut(s)	890, 922
BbvI	GCAGC	4 cut(s)	234, 401, 481, 622
BccI	CCATC	1 cut(s)	583
BciT130I	CCWGG	2 cut(s)	444, 612
BcoDI	GTCTC	2 cut(s)	309, 735
BfaI	CTAG	1 cut(s)	428
BfuAI	ACCTGC	3 cut(s)	55, 814, 894
BglI	GCCNNNNNGGC	1 cut(s)	61
BisI	GCNGC	6 cut(s)	53, 223, 390, 495, 633, 636
BlsI	GCNGC	6 cut(s)	54, 224, 391, 496, 634, 637
Bme1390I	CCNGG	2 cut(s)	444, 612
Bme18I	GGWCC	1 cut(s)	440
BmgT120I	GGNCC	2 cut(s)	50, 440
BmiI	GGNNCC	1 cut(s)	441
BmrFI	CCNGG	2 cut(s)	444, 612
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	1 cut(s)	226
BmuI	ACTGGG	1 cut(s)	417
BoxI	GACNNNNGTC	1 cut(s)	741
BpmI	CTGGAG	3 cut(s)	28, 633, 639
BpuEI	CTTGAG	2 cut(s)	717, 918
BsaBI	GATNNNNATC	1 cut(s)	879
BsaI	GGTCTC	1 cut(s)	309
BsaJI	CCNNGG	1 cut(s)	818
BsaWI	WCCGGW	1 cut(s)	832
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	6 cut(s)	59, 360, 549, 550, 617, 631
Bse118I	RCCGGY	1 cut(s)	300
Bse1I	ACTGG	2 cut(s)	376, 412
Bse3DI	GCAATG	1 cut(s)	489
Bse8I	GATNNNNATC	1 cut(s)	879
BseBI	CCWGG	2 cut(s)	444, 612
BseDI	CCNNGG	1 cut(s)	818
BseGI	GGATG	1 cut(s)	173
BseJI	GATNNNNATC	1 cut(s)	879
BseLI	CCNNNNNNNGG	6 cut(s)	59, 360, 549, 550, 617, 631
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	3 cut(s)	105, 231, 384
BseNI	ACTGG	2 cut(s)	376, 412
BseRI	GAGGAG	2 cut(s)	144, 414
BseXI	GCAGC	4 cut(s)	234, 401, 481, 622
BsgI	GTGCAG	1 cut(s)	792
BshFI	GGCC	3 cut(s)	52, 450, 624
BsiSI	CCGG	2 cut(s)	301, 833
BslFI	GGGAC	1 cut(s)	443
BslI	CCNNNNNNNGG	6 cut(s)	59, 360, 549, 550, 617, 631
BsmAI	GTCTC	2 cut(s)	309, 735
BsmFI	GGGAC	1 cut(s)	443
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	3 cut(s)	52, 450, 624
Bso31I	GGTCTC	1 cut(s)	309
Bsp143I	GATC	4 cut(s)	34, 346, 431, 880
Bsp19I	CCATGG	1 cut(s)	818
BspACI	CCGC	2 cut(s)	53, 632
BspANI	GGCC	3 cut(s)	52, 450, 624
BspCNI	CTCAG	3 cut(s)	104, 232, 385
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	1 cut(s)	441
BspMI	ACCTGC	3 cut(s)	55, 814, 894
BspPI	GGATC	2 cut(s)	439, 888
BspQI	GCTCTTC	1 cut(s)	893
BspTNI	GGTCTC	1 cut(s)	309
BsrDI	GCAATG	1 cut(s)	489
BsrFI	RCCGGY	1 cut(s)	300
BsrI	ACTGG	2 cut(s)	376, 412
BssAI	RCCGGY	1 cut(s)	300
BssECI	CCNNGG	1 cut(s)	818
BssMI	GATC	4 cut(s)	34, 346, 431, 880
BssT1I	CCWWGG	1 cut(s)	818
Bst2UI	CCWGG	2 cut(s)	444, 612
Bst4CI	ACNGT	4 cut(s)	134, 163, 549, 856
Bst6I	CTCTTC	2 cut(s)	756, 893
BstAPI	GCANNNNNTGC	3 cut(s)	491, 568, 845
BstC8I	GCNNGC	1 cut(s)	377
BstDEI	CTNAG	3 cut(s)	91, 240, 393
BstDSI	CCRYGG	1 cut(s)	818
BstF5I	GGATG	1 cut(s)	173
BstHHI	GCGC	2 cut(s)	762, 850
BstKTI	GATC	4 cut(s)	37, 349, 434, 883
BstMAI	GTCTC	2 cut(s)	309, 735
BstMBI	GATC	4 cut(s)	34, 346, 431, 880
BstMWI	GCNNNNNNNGC	6 cut(s)	61, 219, 491, 568, 644, 845
BstNI	CCWGG	2 cut(s)	444, 612
BstPAI	GACNNNNGTC	1 cut(s)	741
BstSCI	CCNGG	2 cut(s)	442, 610
BstV1I	GCAGC	4 cut(s)	234, 401, 481, 622
BstXI	CCANNNNNNTGG	1 cut(s)	326
BsuRI	GGCC	3 cut(s)	52, 450, 624
BtgI	CCRYGG	1 cut(s)	818
BtsCI	GGATG	1 cut(s)	173
BtsI	GCAGTG	2 cut(s)	141, 526
BtsIMutI	CAGTG	4 cut(s)	141, 526, 554, 593
BveI	ACCTGC	3 cut(s)	55, 814, 894
Cac8I	GCNNGC	1 cut(s)	377
CciI	TCATGA	1 cut(s)	343
CfoI	GCGC	2 cut(s)	762, 850
Cfr10I	RCCGGY	1 cut(s)	300
Cfr13I	GGNCC	2 cut(s)	50, 440
Csp6I	GTAC	2 cut(s)	507, 907
CviAII	CATG	3 cut(s)	281, 344, 819
CviQI	GTAC	2 cut(s)	507, 907
DdeI	CTNAG	3 cut(s)	91, 240, 393
DpnI	GATC	4 cut(s)	36, 348, 433, 882
DpnII	GATC	4 cut(s)	34, 346, 431, 880
Eam1104I	CTCTTC	2 cut(s)	756, 893
EarI	CTCTTC	2 cut(s)	756, 893
Eco130I	CCWWGG	1 cut(s)	818
Eco147I	AGGCCT	1 cut(s)	624
Eco31I	GGTCTC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	440
EcoO109I	RGGNCCY	1 cut(s)	440
EcoRI	GAATTC	2 cut(s)	202, 248
EcoRII	CCWGG	2 cut(s)	442, 610
EcoT14I	CCWWGG	1 cut(s)	818
ErhI	CCWWGG	1 cut(s)	818
FaeI	CATG	3 cut(s)	284, 347, 822
FalI	AAGNNNNNCTT	2 cut(s)	555, 587
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	3 cut(s)	280, 343, 818
Fnu4HI	GCNGC	6 cut(s)	53, 223, 390, 495, 633, 636
FokI	GGATG	1 cut(s)	180
Fsp4HI	GCNGC	6 cut(s)	53, 223, 390, 495, 633, 636
FspBI	CTAG	1 cut(s)	428
FspI	TGCGCA	1 cut(s)	849
GlaI	GCGC	2 cut(s)	761, 849
GluI	GCNGC	6 cut(s)	53, 223, 390, 495, 633, 636
GsuI	CTGGAG	3 cut(s)	28, 633, 639
HaeIII	GGCC	3 cut(s)	52, 450, 624
HapII	CCGG	2 cut(s)	301, 833
HhaI	GCGC	2 cut(s)	762, 850
Hin1II	CATG	3 cut(s)	284, 347, 822
Hin6I	GCGC	2 cut(s)	760, 848
HinP1I	GCGC	2 cut(s)	760, 848
HincII	GTYRAC	2 cut(s)	130, 535
HindII	GTYRAC	2 cut(s)	130, 535
HindIII	AAGCTT	1 cut(s)	936
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	2 cut(s)	301, 833
HphI	GGTGA	2 cut(s)	98, 245
Hpy166II	GTNNAC	3 cut(s)	130, 278, 535
Hpy188I	TCNGA	3 cut(s)	123, 683, 796
Hpy188III	TCNNGA	3 cut(s)	7, 344, 734
Hpy8I	GTNNAC	3 cut(s)	130, 278, 535
HpyAV	CCTTC	3 cut(s)	66, 354, 461
HpyCH4III	ACNGT	4 cut(s)	134, 163, 549, 856
HpyCH4IV	ACGT	2 cut(s)	16, 537
HpyCH4V	TGCA	7 cut(s)	379, 404, 497, 809, 839, 916, 949
HpyF10VI	GCNNNNNNNGC	6 cut(s)	61, 219, 491, 568, 644, 845
HpyF3I	CTNAG	3 cut(s)	91, 240, 393
HpySE526I	ACGT	2 cut(s)	16, 537
Hsp92II	CATG	3 cut(s)	284, 347, 822
HspAI	GCGC	2 cut(s)	760, 848
Kzo9I	GATC	4 cut(s)	34, 346, 431, 880
LguI	GCTCTTC	1 cut(s)	893
LmnI	GCTCC	2 cut(s)	427, 614
Lsp1109I	GCAGC	4 cut(s)	234, 401, 481, 622
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	1 cut(s)	428
MaeII	ACGT	2 cut(s)	16, 537
MaeIII	GTNAC	3 cut(s)	86, 476, 919
MalI	GATC	4 cut(s)	36, 348, 433, 882
MboI	GATC	4 cut(s)	34, 346, 431, 880
MboII	GAAGA	6 cut(s)	129, 670, 743, 795, 907, 910
MluCI	AATT	5 cut(s)	202, 248, 674, 865, 924
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	2 cut(s)	79, 770
MroXI	GAANNNNTTC	3 cut(s)	106, 606, 677
MseI	TTAA	2 cut(s)	228, 944
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	2 cut(s)	301, 833
MspR9I	CCNGG	2 cut(s)	444, 612
Mva1269I	GAATGC	1 cut(s)	302
MvaI	CCWGG	2 cut(s)	444, 612
MwoI	GCNNNNNNNGC	6 cut(s)	61, 219, 491, 568, 644, 845
NcoI	CCATGG	1 cut(s)	818
NdeII	GATC	4 cut(s)	34, 346, 431, 880
NlaIII	CATG	3 cut(s)	284, 347, 822
NlaIV	GGNNCC	1 cut(s)	441
NmuCI	GTSAC	1 cut(s)	86
NsbI	TGCGCA	1 cut(s)	849
PagI	TCATGA	1 cut(s)	343
PceI	AGGCCT	1 cut(s)	624
PciSI	GCTCTTC	1 cut(s)	893
PctI	GAATGC	1 cut(s)	302
PdmI	GAANNNNTTC	3 cut(s)	106, 606, 677
PfoI	TCCNGGA	1 cut(s)	610
PkrI	GCNGC	6 cut(s)	54, 224, 391, 496, 634, 637
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PpuMI	RGGWCCY	1 cut(s)	440
PshAI	GACNNNNGTC	1 cut(s)	741
Psp5II	RGGWCCY	1 cut(s)	440
Psp6I	CCWGG	2 cut(s)	442, 610
PspGI	CCWGG	2 cut(s)	442, 610
PspN4I	GGNNCC	1 cut(s)	441
PspPI	GGNCC	2 cut(s)	50, 440
PspPPI	RGGWCCY	1 cut(s)	440
PsrI	GAACNNNNNNTAC	2 cut(s)	324, 356
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	2 cut(s)	508, 908
RsaNI	GTAC	2 cut(s)	507, 907
SapI	GCTCTTC	1 cut(s)	893
SaqAI	TTAA	2 cut(s)	228, 944
SatI	GCNGC	6 cut(s)	53, 223, 390, 495, 633, 636
Sau3AI	GATC	4 cut(s)	34, 346, 431, 880
Sau96I	GGNCC	2 cut(s)	50, 440
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	2 cut(s)	444, 612
SfaNI	GCATC	1 cut(s)	226
SinI	GGWCC	1 cut(s)	440
SmlI	CTYRAG	2 cut(s)	732, 933
SmoI	CTYRAG	2 cut(s)	732, 933
Sse9I	AATT	5 cut(s)	202, 248, 674, 865, 924
SseBI	AGGCCT	1 cut(s)	624
SsiI	CCGC	2 cut(s)	53, 632
SspMI	CTAG	1 cut(s)	428
StuI	AGGCCT	1 cut(s)	624
StyD4I	CCNGG	2 cut(s)	442, 610
StyI	CCWWGG	1 cut(s)	818
TaaI	ACNGT	4 cut(s)	134, 163, 549, 856
TaiI	ACGT	2 cut(s)	19, 540
TaqI	TCGA	2 cut(s)	70, 578
TasI	AATT	5 cut(s)	202, 248, 674, 865, 924
TauI	GCSGC	2 cut(s)	55, 635
Tru1I	TTAA	2 cut(s)	228, 944
Tru9I	TTAA	2 cut(s)	228, 944
TscAI	CASTG	4 cut(s)	148, 526, 554, 600
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	4 cut(s)	222, 389, 494, 635
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	5 cut(s)	107, 332, 686, 876, 876
TspRI	CASTG	4 cut(s)	148, 526, 554, 600
VpaK11BI	GGWCC	1 cut(s)	440
XapI	RAATTY	3 cut(s)	202, 248, 674
XmnI	GAANNNNTTC	3 cut(s)	106, 606, 677
XspI	CTAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.