Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008768

Physical Location & Seq

Genomic Coordinates Forward (+)

47692448 .. 47699029

Gene Structure 6582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G587300.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGTTCTGGAGGGACCGTGAGAGGGAGAACAAAGAGCAAAACGGTGGTGGACCGCCTTGTGGGCAGGTTCGAGTGCTTGTTGTTGGCGACTCAGGTGTTGGAAAAAGTTCTCTTGTTCATCTGATTGTCAACGGTTCTTCAATCGCTCGTCCTCCTCAGACAGTAGGGTGTACAGTTGGTGTAAAGCATACTACTTATGGAAACTCTGGTAGCTCGTCAAGCAGCATTAAAGGTGATGCTGAGAGAGATTTCTTTATTGAACTCTGGGATGTGCCTGGACATGATAGATACAAAGAATGCCGGTCTCTTTTTTATTCCCAAATTAATGGTGTAATCTTTGTTCATGATCTCTCCCAAAGAAGGACAAAAACTGGCTTACAGAGGTGGGCAGCTGAGATTGCTGCGACTGGGACATTTTCAGCTCCTCTAGGATCTGGAGGTCCTGGTGGTCTTCCTGTCCCCTATATTGTTATAGGTAACAAAGCTGATATTGCTGCAAAAGAGGGTACAAGGGGAAGCAGTGGCAATCTTGTTGACGTAGCTCGACAGTGGGTTGAGAAACAAGGTTTGCTTCCATCCAGTGAGGAACTTCCACTGACTGAGAGTTTTCCTAGTGCTGGAGGCCTTATTGCGGCTGCCAAAGAAGCAAGATATGACAAGGAAGCTGTGATGAAATTTTTCCGTATGTTGATCAGAAGAAGATATTTTTCTGATGATGTACCTGCACAAAATCCATGGTCTGGTTCTCCAGTTCAAAAACCTGCAGAGACTGTAGATGAAAATTGGAGTGATGAGGATCATTCCTACCGGAATTCCAGCTTGCGTGGTGACCCTTACAAGTACAACATGCTCCCTCCTCTTCCAGCGCAACGCAATCTGACACCACCTCCCACGCTTTATCCTCAGCAACCAGTTTCGGTTTCAGAAAACTACAGCCTTCCTAGATTTTCCCATACTAGTTACCCAGAAATCAGCAGTACAGGCAGATCAAAGCGCTCAGATATTAATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0010468 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019222 GO:0032501 GO:0032502 GO:0032922 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048856 GO:0050789 GO:0050896 GO:0060255 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras Roc

Protein Analysis

338

Amino Acids

36.96

Weight (kDa)

8.64

Isoelectric Point (pI)

54.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64813 AT5G64813 AT5G64813
fragaria_vesca	FvH4_1g22810
malus_domestica	MD08G1250200.v1.1 MD15G1445400.v1.1
prunus_persica	Prupe.1G587300_v2.0.a1 Prupe.1G587300_v2.0.a1 Prupe.1G587300_v2.0.a1 Prupe.1G587300_v2.0.a1 Prupe.1G587300_v2.0.a1
pyrus_communis	pycom08g21700 pycom15g39230
rosa_chinensis	RchiOBHm_Chr2g0117121
rosa_laevigata	RLG00000018332
rosa_multiflora	Rmu_sc0005833.1_g000006
rosa_roxburghii	Rroxscaffold_2G00126690
rosa_rugosa	Rorug02G0210700
rosa_samantha	Rh2AG266400 Rh2BG278800 Rh2DG273600 Rh2DG292700
rosa_wichuraiana	Rw2G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	55, 730, 769
AccB7I	CCANNNNNTGG	1 cut(s)	740
AciI	CCGC	2 cut(s)	53, 632
AclWI	GGATC	2 cut(s)	439, 804
AcsI	RAATTY	2 cut(s)	674, 811
AfaI	GTAC	5 cut(s)	172, 508, 720, 842, 979
AfeI	AGCGCT	1 cut(s)	995
AfiI	CCNNNNNNNGG	6 cut(s)	22, 59, 360, 617, 631, 740
AgsI	TTSAA	3 cut(s)	141, 260, 755
AhlI	ACTAGT	1 cut(s)	956
AjnI	CCWGG	2 cut(s)	274, 442
AluBI	AGCT	7 cut(s)	213, 392, 422, 485, 542, 665, 819
AluI	AGCT	7 cut(s)	213, 392, 422, 485, 542, 665, 819
Alw26I	GTCTC	2 cut(s)	309, 761
AlwI	GGATC	2 cut(s)	439, 804
AlwNI	CAGNNNCTG	1 cut(s)	770
Aor51HI	AGCGCT	1 cut(s)	995
AoxI	GGCC	1 cut(s)	622
ApeKI	GCWGC	5 cut(s)	222, 389, 401, 494, 635
ApoI	RAATTY	2 cut(s)	674, 811
AseI	ATTAAT	2 cut(s)	324, 1005
Asp700I	GAANNNNTTC	2 cut(s)	106, 677
AspLEI	GCGC	2 cut(s)	868, 996
AspS9I	GGNCC	3 cut(s)	13, 50, 440
AsuHPI	GGTGA	2 cut(s)	245, 839
AvaII	GGWCC	3 cut(s)	13, 50, 440
BbsI	GAAGAC	1 cut(s)	443
BbvCI	CCTCAGC	1 cut(s)	903
BbvI	GCAGC	5 cut(s)	234, 388, 401, 481, 622
BccI	CCATC	1 cut(s)	583
BciT130I	CCWGG	2 cut(s)	276, 444
BclI	TGATCA	1 cut(s)	690
BcoDI	GTCTC	2 cut(s)	309, 761
BcuI	ACTAGT	1 cut(s)	956
BfaI	CTAG	4 cut(s)	428, 612, 942, 957
BfmI	CTRYAG	3 cut(s)	762, 771, 931
BfoI	RGCGCY	1 cut(s)	997
BfuAI	ACCTGC	3 cut(s)	55, 730, 769
BglI	GCCNNNNNGGC	1 cut(s)	61
BisI	GCNGC	6 cut(s)	223, 390, 402, 495, 633, 636
BlsI	GCNGC	6 cut(s)	224, 391, 403, 496, 634, 637
Bme1390I	CCNGG	2 cut(s)	276, 444
Bme18I	GGWCC	3 cut(s)	13, 50, 440
BmgT120I	GGNCC	3 cut(s)	13, 50, 440
BmiI	GGNNCC	1 cut(s)	14
BmrFI	CCNGG	2 cut(s)	276, 444
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	1 cut(s)	226
BmuI	ACTGGG	1 cut(s)	417
BpiI	GAAGAC	1 cut(s)	443
BpmI	CTGGAG	4 cut(s)	28, 456, 639, 732
Bpu10I	CCTNAGC	1 cut(s)	903
BsaBI	GATNNNNATC	1 cut(s)	795
BsaI	GGTCTC	1 cut(s)	309
BsaJI	CCNNGG	1 cut(s)	734
BsaWI	WCCGGW	1 cut(s)	807
BsaXI	ACNNNNNCTCC	3 cut(s)	31, 871, 901
Bsc4I	CCNNNNNNNGG	6 cut(s)	22, 59, 360, 617, 631, 740
Bse118I	RCCGGY	1 cut(s)	300
Bse1I	ACTGG	5 cut(s)	376, 412, 579, 749, 911
Bse8I	GATNNNNATC	1 cut(s)	795
BseBI	CCWGG	2 cut(s)	276, 444
BseDI	CCNNGG	1 cut(s)	734
BseGI	GGATG	2 cut(s)	274, 575
BseJI	GATNNNNATC	1 cut(s)	795
BseLI	CCNNNNNNNGG	6 cut(s)	22, 59, 360, 617, 631, 740
BseMII	CTCAG	7 cut(s)	105, 170, 231, 384, 591, 917, 1011
BseNI	ACTGG	5 cut(s)	376, 412, 579, 749, 911
BseRI	GAGGAG	3 cut(s)	144, 414, 846
BseXI	GCAGC	5 cut(s)	234, 388, 401, 481, 622
BsgI	GTGCAG	1 cut(s)	708
BshFI	GGCC	1 cut(s)	624
BsiSI	CCGG	2 cut(s)	301, 808
BslFI	GGGAC	3 cut(s)	26, 424, 443
BslI	CCNNNNNNNGG	6 cut(s)	22, 59, 360, 617, 631, 740
BsmAI	GTCTC	2 cut(s)	309, 761
BsmFI	GGGAC	3 cut(s)	26, 424, 443
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	624
Bso31I	GGTCTC	1 cut(s)	309
Bsp1407I	TGTACA	1 cut(s)	170
Bsp143I	GATC	5 cut(s)	346, 431, 690, 796, 986
Bsp19I	CCATGG	1 cut(s)	734
BspACI	CCGC	2 cut(s)	53, 632
BspANI	GGCC	1 cut(s)	624
BspCNI	CTCAG	7 cut(s)	104, 169, 232, 385, 592, 916, 1010
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	1 cut(s)	14
BspMAI	CTGCAG	1 cut(s)	766
BspMI	ACCTGC	3 cut(s)	55, 730, 769
BspPI	GGATC	2 cut(s)	439, 804
BspTNI	GGTCTC	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	300
BsrGI	TGTACA	1 cut(s)	170
BsrI	ACTGG	5 cut(s)	376, 412, 579, 749, 911
BssAI	RCCGGY	1 cut(s)	300
BssECI	CCNNGG	1 cut(s)	734
BssMI	GATC	5 cut(s)	346, 431, 690, 796, 986
BssT1I	CCWWGG	1 cut(s)	734
Bst2UI	CCWGG	2 cut(s)	276, 444
Bst4CI	ACNGT	7 cut(s)	17, 44, 134, 163, 175, 549, 772
Bst6I	CTCTTC	1 cut(s)	864
BstAUI	TGTACA	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	821
BstDEI	CTNAG	7 cut(s)	91, 156, 240, 393, 600, 903, 997
BstDSI	CCRYGG	1 cut(s)	734
BstEII	GGTNACC	1 cut(s)	827
BstF5I	GGATG	2 cut(s)	274, 575
BstH2I	RGCGCY	1 cut(s)	997
BstHHI	GCGC	2 cut(s)	868, 996
BstKTI	GATC	5 cut(s)	349, 434, 693, 799, 989
BstMAI	GTCTC	2 cut(s)	309, 761
BstMBI	GATC	5 cut(s)	346, 431, 690, 796, 986
BstMWI	GCNNNNNNNGC	6 cut(s)	61, 219, 398, 491, 644, 981
BstNI	CCWGG	2 cut(s)	276, 444
BstNSI	RCATGY	1 cut(s)	850
BstPI	GGTNACC	1 cut(s)	827
BstSCI	CCNGG	2 cut(s)	274, 442
BstSFI	CTRYAG	3 cut(s)	762, 771, 931
BstV1I	GCAGC	5 cut(s)	234, 388, 401, 481, 622
BstV2I	GAAGAC	1 cut(s)	443
BstX2I	RGATCY	1 cut(s)	431
BstXI	CCANNNNNNTGG	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	431
BsuRI	GGCC	1 cut(s)	624
BtgI	CCRYGG	1 cut(s)	734
BtsCI	GGATG	2 cut(s)	274, 575
BtsI	GCAGTG	1 cut(s)	526
BtsIMutI	CAGTG	4 cut(s)	526, 554, 586, 593
BveI	ACCTGC	3 cut(s)	55, 730, 769
Cac8I	GCNNGC	1 cut(s)	821
CaiI	CAGNNNCTG	1 cut(s)	770
CciI	TCATGA	1 cut(s)	343
CfoI	GCGC	2 cut(s)	868, 996
Cfr10I	RCCGGY	1 cut(s)	300
Cfr13I	GGNCC	3 cut(s)	13, 50, 440
Csp6I	GTAC	5 cut(s)	171, 507, 719, 841, 978
CviAII	CATG	4 cut(s)	281, 344, 735, 847
CviQI	GTAC	5 cut(s)	171, 507, 719, 841, 978
DdeI	CTNAG	7 cut(s)	91, 156, 240, 393, 600, 903, 997
DpnI	GATC	5 cut(s)	348, 433, 692, 798, 988
DpnII	GATC	5 cut(s)	346, 431, 690, 796, 986
Eam1104I	CTCTTC	1 cut(s)	864
EarI	CTCTTC	1 cut(s)	864
Eco130I	CCWWGG	1 cut(s)	734
Eco147I	AGGCCT	1 cut(s)	624
Eco31I	GGTCTC	1 cut(s)	309
Eco47I	GGWCC	3 cut(s)	13, 50, 440
Eco47III	AGCGCT	1 cut(s)	995
Eco91I	GGTNACC	1 cut(s)	827
EcoO109I	RGGNCCY	1 cut(s)	440
EcoO65I	GGTNACC	1 cut(s)	827
EcoRI	GAATTC	1 cut(s)	811
EcoRII	CCWGG	2 cut(s)	274, 442
EcoT14I	CCWWGG	1 cut(s)	734
ErhI	CCWWGG	1 cut(s)	734
FaeI	CATG	4 cut(s)	284, 347, 738, 850
FalI	AAGNNNNNCTT	2 cut(s)	555, 587
FaqI	GGGAC	3 cut(s)	26, 424, 443
FatI	CATG	4 cut(s)	280, 343, 734, 846
FbaI	TGATCA	1 cut(s)	690
Fnu4HI	GCNGC	6 cut(s)	223, 390, 402, 495, 633, 636
FokI	GGATG	2 cut(s)	281, 562
Fsp4HI	GCNGC	6 cut(s)	223, 390, 402, 495, 633, 636
FspBI	CTAG	4 cut(s)	428, 612, 942, 957
GlaI	GCGC	2 cut(s)	867, 995
GluI	GCNGC	6 cut(s)	223, 390, 402, 495, 633, 636
GsuI	CTGGAG	4 cut(s)	28, 456, 639, 732
HaeII	RGCGCY	1 cut(s)	997
HaeIII	GGCC	1 cut(s)	624
HapII	CCGG	2 cut(s)	301, 808
HhaI	GCGC	2 cut(s)	868, 996
Hin1II	CATG	4 cut(s)	284, 347, 738, 850
Hin6I	GCGC	2 cut(s)	866, 994
HinP1I	GCGC	2 cut(s)	866, 994
HincII	GTYRAC	2 cut(s)	130, 535
HindII	GTYRAC	2 cut(s)	130, 535
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	2 cut(s)	301, 808
HphI	GGTGA	2 cut(s)	245, 839
Hpy166II	GTNNAC	4 cut(s)	50, 130, 171, 535
Hpy188I	TCNGA	7 cut(s)	123, 159, 695, 712, 879, 925, 1000
Hpy188III	TCNNGA	3 cut(s)	7, 344, 435
Hpy8I	GTNNAC	4 cut(s)	50, 130, 171, 535
HpyAV	CCTTC	2 cut(s)	354, 947
HpyCH4III	ACNGT	7 cut(s)	17, 44, 134, 163, 175, 549, 772
HpyCH4IV	ACGT	1 cut(s)	537
HpyCH4V	TGCA	3 cut(s)	497, 725, 764
HpyF10VI	GCNNNNNNNGC	6 cut(s)	61, 219, 398, 491, 644, 981
HpyF3I	CTNAG	7 cut(s)	91, 156, 240, 393, 600, 903, 997
HpySE526I	ACGT	1 cut(s)	537
Hsp92II	CATG	4 cut(s)	284, 347, 738, 850
HspAI	GCGC	2 cut(s)	866, 994
Ksp22I	TGATCA	1 cut(s)	690
Kzo9I	GATC	5 cut(s)	346, 431, 690, 796, 986
LmnI	GCTCC	2 cut(s)	427, 855
Lsp1109I	GCAGC	5 cut(s)	234, 388, 401, 481, 622
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	4 cut(s)	428, 612, 942, 957
MaeII	ACGT	1 cut(s)	537
MaeIII	GTNAC	3 cut(s)	476, 827, 959
MalI	GATC	5 cut(s)	348, 433, 692, 798, 988
MboI	GATC	5 cut(s)	346, 431, 690, 796, 986
MboII	GAAGA	5 cut(s)	129, 443, 708, 711, 851
MflI	RGATCY	1 cut(s)	431
MluCI	AATT	4 cut(s)	321, 674, 781, 811
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	79
MroXI	GAANNNNTTC	2 cut(s)	106, 677
MseI	TTAA	3 cut(s)	228, 324, 1005
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	2 cut(s)	301, 808
MspR9I	CCNGG	2 cut(s)	276, 444
Mva1269I	GAATGC	1 cut(s)	302
MvaI	CCWGG	2 cut(s)	276, 444
MwoI	GCNNNNNNNGC	6 cut(s)	61, 219, 398, 491, 644, 981
NcoI	CCATGG	1 cut(s)	734
NdeII	GATC	5 cut(s)	346, 431, 690, 796, 986
NlaIII	CATG	4 cut(s)	284, 347, 738, 850
NlaIV	GGNNCC	1 cut(s)	14
NmuCI	GTSAC	1 cut(s)	827
NspI	RCATGY	1 cut(s)	850
PagI	TCATGA	1 cut(s)	343
PceI	AGGCCT	1 cut(s)	624
PctI	GAATGC	1 cut(s)	302
PdmI	GAANNNNTTC	2 cut(s)	106, 677
PflMI	CCANNNNNTGG	1 cut(s)	740
PkrI	GCNGC	6 cut(s)	224, 391, 403, 496, 634, 637
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PpuMI	RGGWCCY	1 cut(s)	440
PshBI	ATTAAT	2 cut(s)	324, 1005
Psp5II	RGGWCCY	1 cut(s)	440
Psp6I	CCWGG	2 cut(s)	274, 442
PspEI	GGTNACC	1 cut(s)	827
PspGI	CCWGG	2 cut(s)	274, 442
PspN4I	GGNNCC	1 cut(s)	14
PspPI	GGNCC	3 cut(s)	13, 50, 440
PspPPI	RGGWCCY	1 cut(s)	440
PsrI	GAACNNNNNNTAC	2 cut(s)	324, 356
PstI	CTGCAG	1 cut(s)	766
PstNI	CAGNNNCTG	1 cut(s)	770
PsuI	RGATCY	1 cut(s)	431
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	5 cut(s)	172, 508, 720, 842, 979
RsaNI	GTAC	5 cut(s)	171, 507, 719, 841, 978
SaqAI	TTAA	3 cut(s)	228, 324, 1005
SatI	GCNGC	6 cut(s)	223, 390, 402, 495, 633, 636
Sau3AI	GATC	5 cut(s)	346, 431, 690, 796, 986
Sau96I	GGNCC	3 cut(s)	13, 50, 440
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	2 cut(s)	276, 444
SfaNI	GCATC	1 cut(s)	226
SfcI	CTRYAG	3 cut(s)	762, 771, 931
SinI	GGWCC	3 cut(s)	13, 50, 440
SpeI	ACTAGT	1 cut(s)	956
Sse9I	AATT	4 cut(s)	321, 674, 781, 811
SseBI	AGGCCT	1 cut(s)	624
SsiI	CCGC	2 cut(s)	53, 632
SspMI	CTAG	4 cut(s)	428, 612, 942, 957
StuI	AGGCCT	1 cut(s)	624
StyD4I	CCNGG	2 cut(s)	274, 442
StyI	CCWWGG	1 cut(s)	734
TaaI	ACNGT	7 cut(s)	17, 44, 134, 163, 175, 549, 772
TaiI	ACGT	1 cut(s)	540
TaqI	TCGA	2 cut(s)	70, 544
TasI	AATT	4 cut(s)	321, 674, 781, 811
TatI	WGTACW	3 cut(s)	170, 840, 977
TauI	GCSGC	1 cut(s)	635
Tru1I	TTAA	3 cut(s)	228, 324, 1005
Tru9I	TTAA	3 cut(s)	228, 324, 1005
TscAI	CASTG	4 cut(s)	526, 554, 586, 600
TseFI	GTSAC	1 cut(s)	827
TseI	GCWGC	5 cut(s)	222, 389, 401, 494, 635
Tsp45I	GTSAC	1 cut(s)	827
TspDTI	ATGAA	4 cut(s)	107, 332, 686, 792
TspGWI	ACGGA	1 cut(s)	671
TspRI	CASTG	4 cut(s)	526, 554, 586, 600
Van91I	CCANNNNNTGG	1 cut(s)	740
VpaK11BI	GGWCC	3 cut(s)	13, 50, 440
VspI	ATTAAT	2 cut(s)	324, 1005
XapI	RAATTY	2 cut(s)	674, 811
XceI	RCATGY	1 cut(s)	850
XmnI	GAANNNNTTC	2 cut(s)	106, 677
XspI	CTAG	4 cut(s)	428, 612, 942, 957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.