Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008768

Physical Location & Seq

Genomic Coordinates Forward (+)

21134717 .. 21139391

Gene Structure 4675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g21700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTTCTGGAGGGACCGTGACCGTGAGAGGGACAACAAAGACCAAAACGGTGGCGGCGGTCCGCCTTGTGGCCAGGTTCGGGTGCTGGTTGTCGGCGACTCTGGTGTTGGAAAAACTGCTCTTGTTCATCTGATTGTCAAAGGTTCTTCCATCACGCGTCCTCCTCAGACAGTAGGGTGTACAGTAGGTGTAAAGCATACTACTTATGGAAACTTGGGTAGCTCGTCAAGCAGTATTAAAGGTGACACTGAGAGAGATTTCTTTATTGAACTCTGGGATGTGTCTGGACATGATAGATACAAAGAATGCCGATCTCTTTTTTATTCCCAAATTAATGGTGTAATCTTTGTTCATGATCTCTCCCAGAGGAGGACAAAAACTGGCTTACAGAAGTGGGCAGCTGAGATTGCTGCAACTGGGACATTTTCGGCTCCTCTAGGATCTGGAGGTCCTGGTGGCCTTCCTGTCCCATATATTGTTATAGGTAACAAAGCTGATATTGCTGCAAAAGAGGGTACAAGGGGAAGCAGTGGCAATCTTGTTGACGTAGCTCGACAGTGGGTTGAGAAACAAGGTTTGCTTCCATCCAGTGAAGAACTTCCACTGACTGAGAGTTTCCCTGGTGCTGGAGGCCTTATTGCGGCTGCCAAAGAAGCAAGATATGACAAGGAAGCTGTGATGAAATTTTTCCGTGTGTTGATCAAAAGAAGATATTTTTCCGATGATTTACCTGCACAGAATCCATGGTCTAGTTCTCAAGTACAAAGACCTGCACGGACTGTAGATGAAAATTGGAGTGACGAGCGATCATTCCTACAGGAATGCCAGCTTGCGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0010468 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019222 GO:0032501 GO:0032502 GO:0032922 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048856 GO:0050789 GO:0050896 GO:0060255 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras Roc

Protein Analysis

280

Amino Acids

30.45

Weight (kDa)

8.55

Isoelectric Point (pI)

48.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64813 AT5G64813 AT5G64813
fragaria_vesca	FvH4_1g22810
malus_domestica	MD08G1250200.v1.1 MD15G1445400.v1.1
prunus_persica	Prupe.1G587300_v2.0.a1 Prupe.1G587300_v2.0.a1 Prupe.1G587300_v2.0.a1 Prupe.1G587300_v2.0.a1 Prupe.1G587300_v2.0.a1
pyrus_communis	pycom08g21700 pycom15g39230
rosa_chinensis	RchiOBHm_Chr2g0117121
rosa_laevigata	RLG00000018332
rosa_multiflora	Rmu_sc0005833.1_g000006
rosa_roxburghii	Rroxscaffold_2G00126690
rosa_rugosa	Rorug02G0210700
rosa_samantha	Rh2AG266400 Rh2BG278800 Rh2DG273600 Rh2DG292700
rosa_wichuraiana	Rw2G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	739, 778
AccII	CGCG	1 cut(s)	157
AciI	CCGC	4 cut(s)	54, 57, 62, 641
AclWI	GGATC	1 cut(s)	448
AcoI	YGGCCR	1 cut(s)	70
AcsI	RAATTY	1 cut(s)	683
AfaI	GTAC	3 cut(s)	181, 517, 762
AfiI	CCNNNNNNNGG	6 cut(s)	28, 68, 79, 369, 626, 640
AflIII	ACRYGT	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	269
AjnI	CCWGG	3 cut(s)	72, 451, 619
AluBI	AGCT	6 cut(s)	222, 401, 494, 551, 674, 829
AluI	AGCT	6 cut(s)	222, 401, 494, 551, 674, 829
AlwI	GGATC	1 cut(s)	448
AoxI	GGCC	3 cut(s)	70, 457, 631
ApeKI	GCWGC	4 cut(s)	398, 410, 503, 644
ApoI	RAATTY	1 cut(s)	683
AseI	ATTAAT	1 cut(s)	333
Asp700I	GAANNNNTTC	2 cut(s)	597, 686
AspS9I	GGNCC	3 cut(s)	13, 59, 449
AsuHPI	GGTGA	1 cut(s)	254
AvaII	GGWCC	3 cut(s)	13, 59, 449
BalI	TGGCCA	1 cut(s)	72
BbvI	GCAGC	4 cut(s)	397, 410, 490, 631
BccI	CCATC	2 cut(s)	158, 592
BciT130I	CCWGG	3 cut(s)	74, 453, 621
BclI	TGATCA	1 cut(s)	699
BfaI	CTAG	2 cut(s)	437, 750
BfmI	CTRYAG	2 cut(s)	780, 815
BfuAI	ACCTGC	2 cut(s)	739, 778
BisI	GCNGC	6 cut(s)	55, 399, 411, 504, 642, 645
BlsI	GCNGC	6 cut(s)	56, 400, 412, 505, 643, 646
Bme1390I	CCNGG	3 cut(s)	74, 453, 621
Bme18I	GGWCC	3 cut(s)	13, 59, 449
BmgT120I	GGNCC	3 cut(s)	13, 59, 449
BmiI	GGNNCC	2 cut(s)	14, 432
BmrFI	CCNGG	3 cut(s)	74, 453, 621
BmrI	ACTGGG	1 cut(s)	426
BmuI	ACTGGG	1 cut(s)	426
BpmI	CTGGAG	3 cut(s)	28, 465, 648
BpuEI	CTTGAG	1 cut(s)	741
BsaJI	CCNNGG	2 cut(s)	619, 743
BsaXI	ACNNNNNCTCC	3 cut(s)	31, 145, 175
Bsc4I	CCNNNNNNNGG	6 cut(s)	28, 68, 79, 369, 626, 640
Bse1I	ACTGG	3 cut(s)	385, 421, 588
BseBI	CCWGG	3 cut(s)	74, 453, 621
BseDI	CCNNGG	2 cut(s)	619, 743
BseGI	GGATG	2 cut(s)	283, 584
BseLI	CCNNNNNNNGG	6 cut(s)	28, 68, 79, 369, 626, 640
BseMII	CTCAG	4 cut(s)	179, 240, 393, 600
BseNI	ACTGG	3 cut(s)	385, 421, 588
BseRI	GAGGAG	3 cut(s)	153, 382, 423
BseXI	GCAGC	4 cut(s)	397, 410, 490, 631
BsgI	GTGCAG	2 cut(s)	717, 756
Bsh1236I	CGCG	1 cut(s)	157
BshFI	GGCC	3 cut(s)	72, 459, 633
BslFI	GGGAC	4 cut(s)	26, 44, 433, 452
BslI	CCNNNNNNNGG	6 cut(s)	28, 68, 79, 369, 626, 640
BsmFI	GGGAC	4 cut(s)	26, 44, 433, 452
BsmI	GAATGC	2 cut(s)	311, 827
BsnI	GGCC	3 cut(s)	72, 459, 633
Bsp1407I	TGTACA	1 cut(s)	179
Bsp143I	GATC	5 cut(s)	311, 355, 440, 699, 806
Bsp19I	CCATGG	1 cut(s)	743
BspACI	CCGC	4 cut(s)	54, 57, 62, 641
BspANI	GGCC	3 cut(s)	72, 459, 633
BspCNI	CTCAG	4 cut(s)	178, 241, 394, 601
BspFNI	CGCG	1 cut(s)	157
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	2 cut(s)	14, 432
BspMI	ACCTGC	2 cut(s)	739, 778
BspPI	GGATC	1 cut(s)	448
BsrGI	TGTACA	1 cut(s)	179
BsrI	ACTGG	3 cut(s)	385, 421, 588
BssECI	CCNNGG	2 cut(s)	619, 743
BssMI	GATC	5 cut(s)	311, 355, 440, 699, 806
BssT1I	CCWWGG	1 cut(s)	743
Bst2UI	CCWGG	3 cut(s)	74, 453, 621
Bst4CI	ACNGT	7 cut(s)	17, 23, 50, 172, 184, 558, 781
BstAUI	TGTACA	1 cut(s)	179
BstC8I	GCNNGC	3 cut(s)	827, 831, 835
BstDEI	CTNAG	4 cut(s)	165, 249, 402, 609
BstDSI	CCRYGG	1 cut(s)	743
BstF5I	GGATG	2 cut(s)	283, 584
BstFNI	CGCG	1 cut(s)	157
BstKTI	GATC	5 cut(s)	314, 358, 443, 702, 809
BstMBI	GATC	5 cut(s)	311, 355, 440, 699, 806
BstMWI	GCNNNNNNNGC	4 cut(s)	228, 407, 500, 653
BstNI	CCWGG	3 cut(s)	74, 453, 621
BstSCI	CCNGG	3 cut(s)	72, 451, 619
BstSFI	CTRYAG	2 cut(s)	780, 815
BstUI	CGCG	1 cut(s)	157
BstV1I	GCAGC	4 cut(s)	397, 410, 490, 631
BstX2I	RGATCY	1 cut(s)	440
BstXI	CCANNNNNNTGG	2 cut(s)	50, 335
BstYI	RGATCY	1 cut(s)	440
BsuRI	GGCC	3 cut(s)	72, 459, 633
BtgI	CCRYGG	1 cut(s)	743
BtsCI	GGATG	2 cut(s)	283, 584
BtsI	GCAGTG	1 cut(s)	535
BtsIMutI	CAGTG	5 cut(s)	246, 535, 563, 595, 602
BveI	ACCTGC	2 cut(s)	739, 778
Cac8I	GCNNGC	3 cut(s)	827, 831, 835
CciI	TCATGA	1 cut(s)	352
Cfr13I	GGNCC	3 cut(s)	13, 59, 449
CpoI	CGGWCCG	1 cut(s)	59
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	3 cut(s)	180, 516, 761
CspI	CGGWCCG	1 cut(s)	59
CviAII	CATG	3 cut(s)	290, 353, 744
CviQI	GTAC	3 cut(s)	180, 516, 761
DdeI	CTNAG	4 cut(s)	165, 249, 402, 609
DpnI	GATC	5 cut(s)	313, 357, 442, 701, 808
DpnII	GATC	5 cut(s)	311, 355, 440, 699, 806
EaeI	YGGCCR	1 cut(s)	70
EciI	GGCGGA	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	743
Eco147I	AGGCCT	1 cut(s)	633
Eco47I	GGWCC	3 cut(s)	13, 59, 449
EcoO109I	RGGNCCY	1 cut(s)	449
EcoRII	CCWGG	3 cut(s)	72, 451, 619
EcoT14I	CCWWGG	1 cut(s)	743
ErhI	CCWWGG	1 cut(s)	743
FaeI	CATG	3 cut(s)	293, 356, 747
FaiI	YATR	9 cut(s)	198, 207, 291, 354, 472, 474, 482, 663, 745
FalI	AAGNNNNNCTT	2 cut(s)	564, 596
FaqI	GGGAC	4 cut(s)	26, 44, 433, 452
FatI	CATG	3 cut(s)	289, 352, 743
FbaI	TGATCA	1 cut(s)	699
Fnu4HI	GCNGC	6 cut(s)	55, 399, 411, 504, 642, 645
FokI	GGATG	2 cut(s)	290, 571
Fsp4HI	GCNGC	6 cut(s)	55, 399, 411, 504, 642, 645
FspBI	CTAG	2 cut(s)	437, 750
GluI	GCNGC	6 cut(s)	55, 399, 411, 504, 642, 645
GsuI	CTGGAG	3 cut(s)	28, 465, 648
HaeIII	GGCC	3 cut(s)	72, 459, 633
HgaI	GACGC	1 cut(s)	146
Hin1II	CATG	3 cut(s)	293, 356, 747
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HinfI	GANTC	2 cut(s)	98, 739
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	2 cut(s)	180, 544
Hpy188I	TCNGA	3 cut(s)	132, 168, 721
Hpy188III	TCNNGA	4 cut(s)	7, 285, 353, 444
Hpy8I	GTNNAC	2 cut(s)	180, 544
HpyAV	CCTTC	1 cut(s)	470
HpyCH4III	ACNGT	7 cut(s)	17, 23, 50, 172, 184, 558, 781
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	4 cut(s)	413, 506, 734, 773
HpyF10VI	GCNNNNNNNGC	4 cut(s)	228, 407, 500, 653
HpyF3I	CTNAG	4 cut(s)	165, 249, 402, 609
HpySE526I	ACGT	1 cut(s)	546
Hsp92II	CATG	3 cut(s)	293, 356, 747
Ksp22I	TGATCA	1 cut(s)	699
Kzo9I	GATC	5 cut(s)	311, 355, 440, 699, 806
LmnI	GCTCC	1 cut(s)	436
Lsp1109I	GCAGC	4 cut(s)	397, 410, 490, 631
MaeI	CTAG	2 cut(s)	437, 750
MaeII	ACGT	1 cut(s)	546
MaeIII	GTNAC	4 cut(s)	17, 242, 485, 797
MalI	GATC	5 cut(s)	313, 357, 442, 701, 808
MboI	GATC	5 cut(s)	311, 355, 440, 699, 806
MboII	GAAGA	3 cut(s)	138, 605, 720
MflI	RGATCY	1 cut(s)	440
MlsI	TGGCCA	1 cut(s)	72
MluCI	AATT	3 cut(s)	330, 683, 790
MluI	ACGCGT	1 cut(s)	155
MluNI	TGGCCA	1 cut(s)	72
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	88
Mox20I	TGGCCA	1 cut(s)	72
MroXI	GAANNNNTTC	2 cut(s)	597, 686
MscI	TGGCCA	1 cut(s)	72
MseI	TTAA	2 cut(s)	237, 333
Msp20I	TGGCCA	1 cut(s)	72
MspA1I	CMGCKG	1 cut(s)	401
MspR9I	CCNGG	3 cut(s)	74, 453, 621
Mva1269I	GAATGC	2 cut(s)	311, 827
MvaI	CCWGG	3 cut(s)	74, 453, 621
MvnI	CGCG	1 cut(s)	157
MwoI	GCNNNNNNNGC	4 cut(s)	228, 407, 500, 653
NcoI	CCATGG	1 cut(s)	743
NdeII	GATC	5 cut(s)	311, 355, 440, 699, 806
NlaIII	CATG	3 cut(s)	293, 356, 747
NlaIV	GGNNCC	2 cut(s)	14, 432
NmuCI	GTSAC	3 cut(s)	17, 242, 797
PagI	TCATGA	1 cut(s)	352
PceI	AGGCCT	1 cut(s)	633
PctI	GAATGC	2 cut(s)	311, 827
PdmI	GAANNNNTTC	2 cut(s)	597, 686
PfeI	GAWTC	1 cut(s)	739
PkrI	GCNGC	6 cut(s)	56, 400, 412, 505, 643, 646
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PpuMI	RGGWCCY	1 cut(s)	449
PshBI	ATTAAT	1 cut(s)	333
Psp5II	RGGWCCY	1 cut(s)	449
Psp6I	CCWGG	3 cut(s)	72, 451, 619
PspGI	CCWGG	3 cut(s)	72, 451, 619
PspN4I	GGNNCC	2 cut(s)	14, 432
PspPI	GGNCC	3 cut(s)	13, 59, 449
PspPPI	RGGWCCY	1 cut(s)	449
PsrI	GAACNNNNNNTAC	2 cut(s)	333, 365
PsuI	RGATCY	1 cut(s)	440
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	3 cut(s)	181, 517, 762
RsaNI	GTAC	3 cut(s)	180, 516, 761
Rsr2I	CGGWCCG	1 cut(s)	59
RsrII	CGGWCCG	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	237, 333
SatI	GCNGC	6 cut(s)	55, 399, 411, 504, 642, 645
Sau3AI	GATC	5 cut(s)	311, 355, 440, 699, 806
Sau96I	GGNCC	3 cut(s)	13, 59, 449
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	3 cut(s)	74, 453, 621
SfcI	CTRYAG	2 cut(s)	780, 815
SinI	GGWCC	3 cut(s)	13, 59, 449
SmlI	CTYRAG	1 cut(s)	756
SmoI	CTYRAG	1 cut(s)	756
Sse9I	AATT	3 cut(s)	330, 683, 790
SseBI	AGGCCT	1 cut(s)	633
SsiI	CCGC	4 cut(s)	54, 57, 62, 641
SspMI	CTAG	2 cut(s)	437, 750
StuI	AGGCCT	1 cut(s)	633
StyD4I	CCNGG	3 cut(s)	72, 451, 619
StyI	CCWWGG	1 cut(s)	743
TaaI	ACNGT	7 cut(s)	17, 23, 50, 172, 184, 558, 781
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	1 cut(s)	553
TasI	AATT	3 cut(s)	330, 683, 790
TatI	WGTACW	2 cut(s)	179, 760
TauI	GCSGC	2 cut(s)	57, 644
TfiI	GAWTC	1 cut(s)	739
Tru1I	TTAA	2 cut(s)	237, 333
Tru9I	TTAA	2 cut(s)	237, 333
TscAI	CASTG	5 cut(s)	253, 535, 563, 595, 609
TseFI	GTSAC	3 cut(s)	17, 242, 797
TseI	GCWGC	4 cut(s)	398, 410, 503, 644
Tsp45I	GTSAC	3 cut(s)	17, 242, 797
TspDTI	ATGAA	4 cut(s)	116, 341, 695, 801
TspGWI	ACGGA	2 cut(s)	680, 790
TspRI	CASTG	5 cut(s)	253, 535, 563, 595, 609
VpaK11BI	GGWCC	3 cut(s)	13, 59, 449
VspI	ATTAAT	1 cut(s)	333
XapI	RAATTY	1 cut(s)	683
XmnI	GAANNNNTTC	2 cut(s)	597, 686
XspI	CTAG	2 cut(s)	437, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.