Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005833.1

Orthogroup ID

OG0008768

Physical Location & Seq

Genomic Coordinates Reverse (-)

31835 .. 39433

Gene Structure 7599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005833.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

atggtcagagcgaagaattccggtcggatctggattcaggttgcgggtcgtcgatcggagtcgaagaagcttgaagcttctggtaaaatatggtgtgctcgatttttggaggacaaaatgttctggagggaacgtgagagggagaacaaagatcaaaacggtagcgggccgccttctgggcaggttcgagttcttgttgttggtgactcaggtgttggaaaaacttctcttgttcatctgattgtcaacggttcttccactgcccgccctcctcaaacagtaggatgttcagttggtgtaaagcacactacttatgggaattctggtagctcgtcaagcagcattaaaggtgatgctgagagggaattctttatagaactctgggatatatgtggacatgatagatacaaagaatgccggtctcttttttattcccaaataaatggtgtaatctttgttcatgatctctcccaaagaaggacaaaaactggcttgcacaagtgggcagctgagatttctgcaactgggtcattttcagctcctctaggatctgggggtcctggtggccttcctgtcccgtatattgttattggtaacaaagcagatattgctgcaaaggagggtacaaggggaagcagtggcaatcttgttgacgttgcccgacagtgggttgagaagcaaggtttgcttccatcgagtgaggaacttccactgactgaaagttttcctggagctggaggccttattgcggctgccaaagaagcaagatatgacaaggaagctgtgatgaaattcttccgaatgttgattaggagaagatatttttctgatgatttacctgcacaaagtccatggtctatttctccggttgcaagtcctgcgcagacagtagatgaaaattggagtgatgaggatcattcatacaggaagaagagcagtttacatggtgatccttacaactacaacatgctccctcctcttccagcacaacgcaatctgacaccacctcccactctttatccacagcagccagttgcagtttctgaaaattacagcatccctagatttgcgtattctagttatccagaaatcagcagtgctgccagatcaaagcgctcagatatcaatgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0010468 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019222 GO:0032501 GO:0032502 GO:0032922 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048856 GO:0050789 GO:0050896 GO:0060255 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras Roc

Protein Analysis

377

Amino Acids

41.45

Weight (kDa)

9.27

Isoelectric Point (pI)

52.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64813 AT5G64813 AT5G64813
fragaria_vesca	FvH4_1g22810
malus_domestica	MD08G1250200.v1.1 MD15G1445400.v1.1
prunus_persica	Prupe.1G587300_v2.0.a1 Prupe.1G587300_v2.0.a1 Prupe.1G587300_v2.0.a1 Prupe.1G587300_v2.0.a1 Prupe.1G587300_v2.0.a1
pyrus_communis	pycom08g21700 pycom15g39230
rosa_chinensis	RchiOBHm_Chr2g0117121
rosa_laevigata	RLG00000018332
rosa_multiflora	Rmu_sc0005833.1_g000006
rosa_roxburghii	Rroxscaffold_2G00126690
rosa_rugosa	Rorug02G0210700
rosa_samantha	Rh2AG266400 Rh2BG278800 Rh2DG273600 Rh2DG292700
rosa_wichuraiana	Rw2G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	882
Acc36I	ACCTGC	2 cut(s)	172, 847
AciI	CCGC	5 cut(s)	44, 165, 170, 265, 749
AclWI	GGATC	4 cut(s)	35, 556, 921, 944
AcsI	RAATTY	4 cut(s)	16, 319, 365, 791
AfaI	GTAC	1 cut(s)	625
AfeI	AGCGCT	1 cut(s)	1115
AfiI	CCNNNNNNNGG	6 cut(s)	176, 477, 666, 667, 734, 748
AgsI	TTSAA	1 cut(s)	74
AjnI	CCWGG	2 cut(s)	559, 727
AloI	GAACNNNNNNTCC	2 cut(s)	104, 136
AluBI	AGCT	7 cut(s)	70, 77, 330, 509, 539, 734, 782
AluI	AGCT	7 cut(s)	70, 77, 330, 509, 539, 734, 782
Alw21I	GWGCWC	1 cut(s)	100
Alw26I	GTCTC	1 cut(s)	426
AlwI	GGATC	4 cut(s)	35, 556, 921, 944
AlwNI	CAGNNNCTG	1 cut(s)	1043
Aor51HI	AGCGCT	1 cut(s)	1115
AoxI	GGCC	3 cut(s)	167, 565, 739
ApeKI	GCWGC	6 cut(s)	339, 506, 611, 752, 1027, 1100
ApoI	RAATTY	4 cut(s)	16, 319, 365, 791
Asp700I	GAANNNNTTC	3 cut(s)	223, 723, 794
AspLEI	GCGC	2 cut(s)	883, 1116
AspS9I	GGNCC	2 cut(s)	167, 557
AsuHPI	GGTGA	3 cut(s)	215, 362, 959
AvaII	GGWCC	1 cut(s)	557
Bbv12I	GWGCWC	1 cut(s)	100
BbvI	GCAGC	6 cut(s)	351, 518, 598, 739, 1039, 1087
BccI	CCATC	1 cut(s)	700
BciT130I	CCWGG	2 cut(s)	561, 729
BcoDI	GTCTC	1 cut(s)	426
BfaI	CTAG	3 cut(s)	545, 1062, 1077
BfoI	RGCGCY	1 cut(s)	1117
BfuAI	ACCTGC	2 cut(s)	172, 847
BglI	GCCNNNNNGGC	1 cut(s)	178
BisI	GCNGC	8 cut(s)	170, 340, 507, 612, 750, 753, 1028, 1101
BlsI	GCNGC	8 cut(s)	171, 341, 508, 613, 751, 754, 1029, 1102
Bme1390I	CCNGG	2 cut(s)	561, 729
Bme18I	GGWCC	1 cut(s)	557
BmgT120I	GGNCC	2 cut(s)	167, 557
BmiI	GGNNCC	1 cut(s)	558
BmrFI	CCNGG	2 cut(s)	561, 729
BmrI	ACTGGG	1 cut(s)	534
BmsI	GCATC	2 cut(s)	343, 1065
BmuI	ACTGGG	1 cut(s)	534
BpmI	CTGGAG	3 cut(s)	145, 750, 756
BsaBI	GATNNNNATC	1 cut(s)	912
BsaI	GGTCTC	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	851
BsaWI	WCCGGW	2 cut(s)	20, 865
BsaXI	ACNNNNNCTCC	4 cut(s)	118, 148, 991, 1021
Bsc4I	CCNNNNNNNGG	6 cut(s)	176, 477, 666, 667, 734, 748
Bse118I	RCCGGY	1 cut(s)	417
Bse1I	ACTGG	3 cut(s)	493, 529, 1031
Bse8I	GATNNNNATC	1 cut(s)	912
BseBI	CCWGG	2 cut(s)	561, 729
BseDI	CCNNGG	1 cut(s)	851
BseGI	GGATG	2 cut(s)	290, 1056
BseJI	GATNNNNATC	1 cut(s)	912
BseLI	CCNNNNNNNGG	6 cut(s)	176, 477, 666, 667, 734, 748
BseMII	CTCAG	4 cut(s)	222, 348, 501, 1131
BseNI	ACTGG	3 cut(s)	493, 529, 1031
BseRI	GAGGAG	3 cut(s)	261, 531, 966
BseXI	GCAGC	6 cut(s)	351, 518, 598, 739, 1039, 1087
BsgI	GTGCAG	1 cut(s)	825
Bsh1285I	CGRYCG	2 cut(s)	25, 56
BshFI	GGCC	3 cut(s)	169, 567, 741
BsiEI	CGRYCG	2 cut(s)	25, 56
BsiHKAI	GWGCWC	1 cut(s)	100
BsiSI	CCGG	3 cut(s)	21, 418, 866
BslFI	GGGAC	1 cut(s)	560
BslI	CCNNNNNNNGG	6 cut(s)	176, 477, 666, 667, 734, 748
BsmAI	GTCTC	1 cut(s)	426
BsmFI	GGGAC	1 cut(s)	560
BsmI	GAATGC	1 cut(s)	419
BsnI	GGCC	3 cut(s)	169, 567, 741
Bso31I	GGTCTC	1 cut(s)	426
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	8 cut(s)	27, 53, 151, 463, 548, 913, 949, 1106
Bsp19I	CCATGG	1 cut(s)	851
BspACI	CCGC	5 cut(s)	44, 165, 170, 265, 749
BspANI	GGCC	3 cut(s)	169, 567, 741
BspCNI	CTCAG	4 cut(s)	221, 349, 502, 1130
BspHI	TCATGA	1 cut(s)	460
BspLI	GGNNCC	1 cut(s)	558
BspMI	ACCTGC	2 cut(s)	172, 847
BspPI	GGATC	4 cut(s)	35, 556, 921, 944
BspQI	GCTCTTC	1 cut(s)	926
BspTNI	GGTCTC	1 cut(s)	426
BsrFI	RCCGGY	1 cut(s)	417
BsrI	ACTGG	3 cut(s)	493, 529, 1031
BssAI	RCCGGY	1 cut(s)	417
BssECI	CCNNGG	1 cut(s)	851
BssMI	GATC	8 cut(s)	27, 53, 151, 463, 548, 913, 949, 1106
BssT1I	CCWWGG	1 cut(s)	851
Bst2UI	CCWGG	2 cut(s)	561, 729
Bst4CI	ACNGT	5 cut(s)	161, 251, 280, 666, 889
Bst6I	CTCTTC	2 cut(s)	926, 984
BstAPI	GCANNNNNTGC	3 cut(s)	608, 685, 878
BstC8I	GCNNGC	3 cut(s)	167, 265, 494
BstDEI	CTNAG	4 cut(s)	208, 357, 510, 1117
BstDSI	CCRYGG	1 cut(s)	851
BstF5I	GGATG	2 cut(s)	290, 1056
BstH2I	RGCGCY	1 cut(s)	1117
BstHHI	GCGC	2 cut(s)	883, 1116
BstKTI	GATC	8 cut(s)	30, 56, 154, 466, 551, 916, 952, 1109
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	8 cut(s)	27, 53, 151, 463, 548, 913, 949, 1106
BstMCI	CGRYCG	2 cut(s)	25, 56
BstMWI	GCNNNNNNNGC	6 cut(s)	178, 336, 608, 685, 761, 878
BstNI	CCWGG	2 cut(s)	561, 729
BstNSI	RCATGY	1 cut(s)	970
BstSCI	CCNGG	2 cut(s)	559, 727
BstV1I	GCAGC	6 cut(s)	351, 518, 598, 739, 1039, 1087
BstX2I	RGATCY	2 cut(s)	27, 548
BstXI	CCANNNNNNTGG	1 cut(s)	443
BstYI	RGATCY	2 cut(s)	27, 548
BsuRI	GGCC	3 cut(s)	169, 567, 741
BtgI	CCRYGG	1 cut(s)	851
BtsCI	GGATG	2 cut(s)	290, 1056
BtsI	GCAGTG	3 cut(s)	258, 643, 1102
BtsIMutI	CAGTG	5 cut(s)	258, 643, 671, 710, 1102
BveI	ACCTGC	2 cut(s)	172, 847
Cac8I	GCNNGC	3 cut(s)	167, 265, 494
CaiI	CAGNNNCTG	1 cut(s)	1043
CciI	TCATGA	1 cut(s)	460
CfoI	GCGC	2 cut(s)	883, 1116
Cfr10I	RCCGGY	1 cut(s)	417
Cfr13I	GGNCC	2 cut(s)	167, 557
Csp6I	GTAC	1 cut(s)	624
CviAII	CATG	5 cut(s)	398, 461, 852, 944, 967
CviQI	GTAC	1 cut(s)	624
DdeI	CTNAG	4 cut(s)	208, 357, 510, 1117
DpnI	GATC	8 cut(s)	29, 55, 153, 465, 550, 915, 951, 1108
DpnII	GATC	8 cut(s)	27, 53, 151, 463, 548, 913, 949, 1106
Eam1104I	CTCTTC	2 cut(s)	926, 984
EarI	CTCTTC	2 cut(s)	926, 984
Eco130I	CCWWGG	1 cut(s)	851
Eco147I	AGGCCT	1 cut(s)	741
Eco31I	GGTCTC	1 cut(s)	426
Eco32I	GATATC	1 cut(s)	1123
Eco47I	GGWCC	1 cut(s)	557
Eco47III	AGCGCT	1 cut(s)	1115
EcoO109I	RGGNCCY	1 cut(s)	557
EcoRI	GAATTC	3 cut(s)	16, 319, 365
EcoRII	CCWGG	2 cut(s)	559, 727
EcoRV	GATATC	1 cut(s)	1123
EcoT14I	CCWWGG	1 cut(s)	851
ErhI	CCWWGG	1 cut(s)	851
FaeI	CATG	5 cut(s)	401, 464, 855, 947, 970
FalI	AAGNNNNNCTT	2 cut(s)	672, 704
FaqI	GGGAC	1 cut(s)	560
FatI	CATG	5 cut(s)	397, 460, 851, 943, 966
FauI	CCCGC	3 cut(s)	37, 158, 272
Fnu4HI	GCNGC	8 cut(s)	170, 340, 507, 612, 750, 753, 1028, 1101
FokI	GGATG	2 cut(s)	297, 1043
Fsp4HI	GCNGC	8 cut(s)	170, 340, 507, 612, 750, 753, 1028, 1101
FspBI	CTAG	3 cut(s)	545, 1062, 1077
FspI	TGCGCA	1 cut(s)	882
GlaI	GCGC	2 cut(s)	882, 1115
GluI	GCNGC	8 cut(s)	170, 340, 507, 612, 750, 753, 1028, 1101
GsuI	CTGGAG	3 cut(s)	145, 750, 756
HaeII	RGCGCY	1 cut(s)	1117
HaeIII	GGCC	3 cut(s)	169, 567, 741
HapII	CCGG	3 cut(s)	21, 418, 866
HhaI	GCGC	2 cut(s)	883, 1116
Hin1II	CATG	5 cut(s)	401, 464, 855, 947, 970
Hin6I	GCGC	2 cut(s)	881, 1114
HinP1I	GCGC	2 cut(s)	881, 1114
HincII	GTYRAC	2 cut(s)	247, 652
HindII	GTYRAC	2 cut(s)	247, 652
HindIII	AAGCTT	2 cut(s)	68, 75
HinfI	GANTC	3 cut(s)	34, 59, 206
HpaII	CCGG	3 cut(s)	21, 418, 866
HphI	GGTGA	3 cut(s)	215, 362, 959
Hpy166II	GTNNAC	4 cut(s)	247, 395, 652, 941
Hpy188I	TCNGA	9 cut(s)	8, 27, 58, 240, 800, 829, 999, 1045, 1120
Hpy188III	TCNNGA	4 cut(s)	31, 124, 461, 1085
Hpy8I	GTNNAC	4 cut(s)	247, 395, 652, 941
Hpy99I	CGWCG	1 cut(s)	54
HpyAV	CCTTC	3 cut(s)	183, 471, 578
HpyCH4III	ACNGT	5 cut(s)	161, 251, 280, 666, 889
HpyCH4IV	ACGT	2 cut(s)	133, 654
HpyCH4V	TGCA	6 cut(s)	496, 521, 614, 842, 872, 1037
HpyF10VI	GCNNNNNNNGC	6 cut(s)	178, 336, 608, 685, 761, 878
HpyF3I	CTNAG	4 cut(s)	208, 357, 510, 1117
HpySE526I	ACGT	2 cut(s)	133, 654
Hsp92II	CATG	5 cut(s)	401, 464, 855, 947, 970
HspAI	GCGC	2 cut(s)	881, 1114
Kzo9I	GATC	8 cut(s)	27, 53, 151, 463, 548, 913, 949, 1106
LguI	GCTCTTC	1 cut(s)	926
LmnI	GCTCC	3 cut(s)	544, 731, 975
Lsp1109I	GCAGC	6 cut(s)	351, 518, 598, 739, 1039, 1087
LweI	GCATC	2 cut(s)	343, 1065
MaeI	CTAG	3 cut(s)	545, 1062, 1077
MaeII	ACGT	2 cut(s)	133, 654
MaeIII	GTNAC	2 cut(s)	203, 593
MalI	GATC	8 cut(s)	29, 55, 153, 465, 550, 915, 951, 1108
MboI	GATC	8 cut(s)	27, 53, 151, 463, 548, 913, 949, 1106
MboII	GAAGA	8 cut(s)	25, 76, 246, 787, 828, 940, 943, 971
MflI	RGATCY	2 cut(s)	27, 548
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	6 cut(s)	16, 319, 365, 791, 898, 1048
MlyI	GAGTC	2 cut(s)	68, 200
MmeI	TCCRAC	2 cut(s)	5, 196
MroXI	GAANNNNTTC	3 cut(s)	223, 723, 794
MseI	TTAA	1 cut(s)	345
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	3 cut(s)	21, 418, 866
MspR9I	CCNGG	2 cut(s)	561, 729
Mva1269I	GAATGC	1 cut(s)	419
MvaI	CCWGG	2 cut(s)	561, 729
MwoI	GCNNNNNNNGC	6 cut(s)	178, 336, 608, 685, 761, 878
NcoI	CCATGG	1 cut(s)	851
NdeII	GATC	8 cut(s)	27, 53, 151, 463, 548, 913, 949, 1106
NlaIII	CATG	5 cut(s)	401, 464, 855, 947, 970
NlaIV	GGNNCC	1 cut(s)	558
NmuCI	GTSAC	1 cut(s)	203
NsbI	TGCGCA	1 cut(s)	882
NspI	RCATGY	1 cut(s)	970
PagI	TCATGA	1 cut(s)	460
PceI	AGGCCT	1 cut(s)	741
PciSI	GCTCTTC	1 cut(s)	926
PctI	GAATGC	1 cut(s)	419
PdmI	GAANNNNTTC	3 cut(s)	223, 723, 794
PfeI	GAWTC	1 cut(s)	34
PfoI	TCCNGGA	1 cut(s)	727
PkrI	GCNGC	8 cut(s)	171, 341, 508, 613, 751, 754, 1029, 1102
Ple19I	CGATCG	1 cut(s)	56
PleI	GAGTC	2 cut(s)	67, 200
PpsI	GAGTC	2 cut(s)	67, 200
PpuMI	RGGWCCY	1 cut(s)	557
Psp5II	RGGWCCY	1 cut(s)	557
Psp6I	CCWGG	2 cut(s)	559, 727
PspGI	CCWGG	2 cut(s)	559, 727
PspN4I	GGNNCC	1 cut(s)	558
PspPI	GGNCC	2 cut(s)	167, 557
PspPPI	RGGWCCY	1 cut(s)	557
PsrI	GAACNNNNNNTAC	2 cut(s)	441, 473
PstNI	CAGNNNCTG	1 cut(s)	1043
PsuI	RGATCY	2 cut(s)	27, 548
PvuI	CGATCG	1 cut(s)	56
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	1 cut(s)	625
RsaNI	GTAC	1 cut(s)	624
SapI	GCTCTTC	1 cut(s)	926
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	8 cut(s)	170, 340, 507, 612, 750, 753, 1028, 1101
Sau3AI	GATC	8 cut(s)	27, 53, 151, 463, 548, 913, 949, 1106
Sau96I	GGNCC	2 cut(s)	167, 557
SchI	GAGTC	2 cut(s)	68, 200
ScrFI	CCNGG	2 cut(s)	561, 729
SduI	GDGCHC	1 cut(s)	100
SfaNI	GCATC	2 cut(s)	343, 1065
SinI	GGWCC	1 cut(s)	557
Sse9I	AATT	6 cut(s)	16, 319, 365, 791, 898, 1048
SseBI	AGGCCT	1 cut(s)	741
SsiI	CCGC	5 cut(s)	44, 165, 170, 265, 749
SspMI	CTAG	3 cut(s)	545, 1062, 1077
StuI	AGGCCT	1 cut(s)	741
StyD4I	CCNGG	2 cut(s)	559, 727
StyI	CCWWGG	1 cut(s)	851
TaaI	ACNGT	5 cut(s)	161, 251, 280, 666, 889
TaiI	ACGT	2 cut(s)	136, 657
TaqI	TCGA	5 cut(s)	52, 62, 100, 187, 695
TasI	AATT	6 cut(s)	16, 319, 365, 791, 898, 1048
TauI	GCSGC	2 cut(s)	172, 752
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	5 cut(s)	265, 643, 671, 717, 1102
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	6 cut(s)	339, 506, 611, 752, 1027, 1100
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	5 cut(s)	224, 449, 803, 909, 909
TspRI	CASTG	5 cut(s)	265, 643, 671, 717, 1102
VpaK11BI	GGWCC	1 cut(s)	557
XapI	RAATTY	4 cut(s)	16, 319, 365, 791
XceI	RCATGY	1 cut(s)	970
XmnI	GAANNNNTTC	3 cut(s)	223, 723, 794
XspI	CTAG	3 cut(s)	545, 1062, 1077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.