Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008768

Physical Location & Seq

Genomic Coordinates Reverse (-)

14750299 .. 14757146

Gene Structure 6848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g22810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGTTCTGGAGGGAACGTGAGAGGGAGAACAACAAAGAGCAAAACGGTGGTGGGCCGCCTTCTGGGCAGGTTCGAGTTCTTGTTGTTGGTGACTCAGGTGTTGGAAAAACTTCTCTTGTTCATCTGATTGTCAACGGTTCTTCCACTGCACGCCCTCCTCAAACAGTAGGATGTTCAGTTGGTGTAAAGCATACTACTTATGGCAATTCTGGTAGCTCGTCAAGCAGCATTAAAGGCGACGCTGAGAGAGAATTTTTTATAGAACTCTGGGATATATGTGGACATGATAGATACAAAGAATGCCGGTCTCTTTTTTATTCCCAAATAAATGGTGTAATCTTTGTTCACGATCTCTCCCAAAGAAGGACAAAAACTGGCTTGCAGAAGTGGGCAACTGAGATTTCTGCAACTGGGACATTTTCAGCTCCTCTGGGATCTGGAGGTCCTGGTGGCCTTCCTGTCCCTTATATTGTTATTGGTAACAAAGCGGATATTGCTGCAAAGGATGGTACGAGGGGAAGCAGTGGAAATCTTGTTGATGTTGCCCGACAGTGGGTTGAGAAGCAAGGTTTGCTACCATCGAGCGAGGAACTTCCACTGACTGAAAGTTTTCCTGGAGCTGGAGGCCTTATTGCGGCTGCCAGAGAAGCAAGATATGACAAGGAAGCTGTGATGAAATTCTTCCGAATGTTGATTAGGAGAAGATATTTTTCTGATGATTTACCTGCACAAAGTCCATGGTCTATCTCTCCGGTTGAAAGTCCTGCGCAGACAGTAGATGAAAATTGGAGTGATGAGGATCATTCATACAGGAAGAAGAGCAGTTTACATGGTGGCGACCCTTACAAGTACAACATGCTCCCTCCTCTTCCAGCGCAACGCAATCTGACACCACCTCCCACGCTTTATCCACAGCAGCCAGTTGCGGTTTCTGAAAATTACAGCATCCCTAGATTTGCATATTCTAGTTACCCAGAAATCAGCAATGCTGCCAGATCAAAGCGCTCAGATATCAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0010468 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019222 GO:0032501 GO:0032502 GO:0032922 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048856 GO:0050789 GO:0050896 GO:0060255 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras Roc

Protein Analysis

341

Amino Acids

37.27

Weight (kDa)

8.62

Isoelectric Point (pI)

55.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Roc	PF08477	25 - 138	6.1e-17	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	25 - 169	6e-16	Ras family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008768)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64813 AT5G64813 AT5G64813
fragaria_vesca	FvH4_1g22810
malus_domestica	MD08G1250200.v1.1 MD15G1445400.v1.1
prunus_persica	Prupe.1G587300_v2.0.a1 Prupe.1G587300_v2.0.a1 Prupe.1G587300_v2.0.a1 Prupe.1G587300_v2.0.a1 Prupe.1G587300_v2.0.a1
pyrus_communis	pycom08g21700 pycom15g39230
rosa_chinensis	RchiOBHm_Chr2g0117121
rosa_laevigata	RLG00000018332
rosa_multiflora	Rmu_sc0005833.1_g000006
rosa_roxburghii	Rroxscaffold_2G00126690
rosa_rugosa	Rorug02G0210700
rosa_samantha	Rh2AG266400 Rh2BG278800 Rh2DG273600 Rh2DG292700
rosa_wichuraiana	Rw2G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	768
Acc36I	ACCTGC	2 cut(s)	58, 733
AciI	CCGC	4 cut(s)	56, 488, 635, 926
AclWI	GGATC	2 cut(s)	442, 807
AcsI	RAATTY	2 cut(s)	251, 677
AfaI	GTAC	2 cut(s)	511, 851
AfeI	AGCGCT	1 cut(s)	1004
AfiI	CCNNNNNNNGG	6 cut(s)	62, 363, 552, 553, 620, 634
AgsI	TTSAA	1 cut(s)	758
AjnI	CCWGG	2 cut(s)	445, 613
AluBI	AGCT	4 cut(s)	216, 425, 620, 668
AluI	AGCT	4 cut(s)	216, 425, 620, 668
Alw26I	GTCTC	1 cut(s)	312
AlwI	GGATC	2 cut(s)	442, 807
Aor51HI	AGCGCT	1 cut(s)	1004
AoxI	GGCC	3 cut(s)	53, 451, 625
ApeKI	GCWGC	5 cut(s)	225, 497, 638, 916, 989
ApoI	RAATTY	2 cut(s)	251, 677
Asp700I	GAANNNNTTC	3 cut(s)	109, 609, 680
AspLEI	GCGC	3 cut(s)	769, 877, 1005
AspS9I	GGNCC	2 cut(s)	53, 443
AsuHPI	GGTGA	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	443
BbvI	GCAGC	5 cut(s)	237, 484, 625, 928, 976
BccI	CCATC	2 cut(s)	500, 586
BciT130I	CCWGG	2 cut(s)	447, 615
BcoDI	GTCTC	1 cut(s)	312
BfaI	CTAG	2 cut(s)	951, 966
BfoI	RGCGCY	1 cut(s)	1006
BfuAI	ACCTGC	2 cut(s)	58, 733
BglI	GCCNNNNNGGC	1 cut(s)	64
BisI	GCNGC	7 cut(s)	56, 226, 498, 636, 639, 917, 990
BlsI	GCNGC	7 cut(s)	57, 227, 499, 637, 640, 918, 991
Bme1390I	CCNGG	2 cut(s)	447, 615
Bme18I	GGWCC	1 cut(s)	443
BmgT120I	GGNCC	2 cut(s)	53, 443
BmrFI	CCNGG	2 cut(s)	447, 615
BmrI	ACTGGG	1 cut(s)	420
BmsI	GCATC	1 cut(s)	954
BmuI	ACTGGG	1 cut(s)	420
BpmI	CTGGAG	4 cut(s)	28, 459, 636, 642
BsaBI	GATNNNNATC	1 cut(s)	798
BsaI	GGTCTC	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	737
BsaWI	WCCGGW	1 cut(s)	751
BsaXI	ACNNNNNCTCC	5 cut(s)	31, 338, 368, 880, 910
Bsc4I	CCNNNNNNNGG	6 cut(s)	62, 363, 552, 553, 620, 634
Bse118I	RCCGGY	1 cut(s)	303
Bse1I	ACTGG	3 cut(s)	379, 415, 920
Bse3DI	GCAATG	1 cut(s)	991
Bse8I	GATNNNNATC	1 cut(s)	798
BseBI	CCWGG	2 cut(s)	447, 615
BseDI	CCNNGG	1 cut(s)	737
BseGI	GGATG	3 cut(s)	176, 511, 945
BseJI	GATNNNNATC	1 cut(s)	798
BseLI	CCNNNNNNNGG	6 cut(s)	62, 363, 552, 553, 620, 634
BseMI	GCAATG	1 cut(s)	991
BseMII	CTCAG	4 cut(s)	108, 234, 387, 1020
BseNI	ACTGG	3 cut(s)	379, 415, 920
BseRI	GAGGAG	3 cut(s)	147, 417, 855
BseXI	GCAGC	5 cut(s)	237, 484, 625, 928, 976
BsgI	GTGCAG	2 cut(s)	132, 711
BshFI	GGCC	3 cut(s)	55, 453, 627
BsiSI	CCGG	2 cut(s)	304, 752
BslFI	GGGAC	2 cut(s)	427, 446
BslI	CCNNNNNNNGG	6 cut(s)	62, 363, 552, 553, 620, 634
BsmAI	GTCTC	1 cut(s)	312
BsmFI	GGGAC	2 cut(s)	427, 446
BsmI	GAATGC	1 cut(s)	305
BsnI	GGCC	3 cut(s)	55, 453, 627
Bso31I	GGTCTC	1 cut(s)	312
Bsp143I	GATC	4 cut(s)	349, 434, 799, 995
Bsp19I	CCATGG	1 cut(s)	737
BspACI	CCGC	4 cut(s)	56, 488, 635, 926
BspANI	GGCC	3 cut(s)	55, 453, 627
BspCNI	CTCAG	4 cut(s)	107, 235, 388, 1019
BspMI	ACCTGC	2 cut(s)	58, 733
BspPI	GGATC	2 cut(s)	442, 807
BspQI	GCTCTTC	1 cut(s)	812
BspTNI	GGTCTC	1 cut(s)	312
BsrDI	GCAATG	1 cut(s)	991
BsrFI	RCCGGY	1 cut(s)	303
BsrI	ACTGG	3 cut(s)	379, 415, 920
BssAI	RCCGGY	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	737
BssMI	GATC	4 cut(s)	349, 434, 799, 995
BssT1I	CCWWGG	1 cut(s)	737
Bst2UI	CCWGG	2 cut(s)	447, 615
Bst4CI	ACNGT	5 cut(s)	47, 137, 166, 552, 775
Bst6I	CTCTTC	2 cut(s)	812, 873
BstAPI	GCANNNNNTGC	1 cut(s)	571
BstC8I	GCNNGC	2 cut(s)	151, 380
BstDEI	CTNAG	4 cut(s)	94, 243, 396, 1006
BstDSI	CCRYGG	1 cut(s)	737
BstF5I	GGATG	3 cut(s)	176, 511, 945
BstH2I	RGCGCY	1 cut(s)	1006
BstHHI	GCGC	3 cut(s)	769, 877, 1005
BstKTI	GATC	4 cut(s)	352, 437, 802, 998
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	4 cut(s)	349, 434, 799, 995
BstMWI	GCNNNNNNNGC	6 cut(s)	64, 222, 234, 494, 571, 647
BstNI	CCWGG	2 cut(s)	447, 615
BstNSI	RCATGY	1 cut(s)	859
BstSCI	CCNGG	2 cut(s)	445, 613
BstV1I	GCAGC	5 cut(s)	237, 484, 625, 928, 976
BstX2I	RGATCY	1 cut(s)	434
BstXI	CCANNNNNNTGG	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	434
BsuRI	GGCC	3 cut(s)	55, 453, 627
BtgI	CCRYGG	1 cut(s)	737
BtsCI	GGATG	3 cut(s)	176, 511, 945
BtsI	GCAGTG	2 cut(s)	144, 529
BtsIMutI	CAGTG	4 cut(s)	144, 529, 557, 596
BveI	ACCTGC	2 cut(s)	58, 733
Cac8I	GCNNGC	2 cut(s)	151, 380
CfoI	GCGC	3 cut(s)	769, 877, 1005
Cfr10I	RCCGGY	1 cut(s)	303
Cfr13I	GGNCC	2 cut(s)	53, 443
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	2 cut(s)	510, 850
CviAII	CATG	4 cut(s)	284, 738, 830, 856
CviQI	GTAC	2 cut(s)	510, 850
DdeI	CTNAG	4 cut(s)	94, 243, 396, 1006
DpnI	GATC	4 cut(s)	351, 436, 801, 997
DpnII	GATC	4 cut(s)	349, 434, 799, 995
Eam1104I	CTCTTC	2 cut(s)	812, 873
EarI	CTCTTC	2 cut(s)	812, 873
Eco130I	CCWWGG	1 cut(s)	737
Eco147I	AGGCCT	1 cut(s)	627
Eco31I	GGTCTC	1 cut(s)	312
Eco32I	GATATC	1 cut(s)	1012
Eco47I	GGWCC	1 cut(s)	443
Eco47III	AGCGCT	1 cut(s)	1004
EcoO109I	RGGNCCY	1 cut(s)	443
EcoRII	CCWGG	2 cut(s)	445, 613
EcoRV	GATATC	1 cut(s)	1012
EcoT14I	CCWWGG	1 cut(s)	737
ErhI	CCWWGG	1 cut(s)	737
FaeI	CATG	4 cut(s)	287, 741, 833, 859
FaqI	GGGAC	2 cut(s)	427, 446
FatI	CATG	4 cut(s)	283, 737, 829, 855
Fnu4HI	GCNGC	7 cut(s)	56, 226, 498, 636, 639, 917, 990
FokI	GGATG	3 cut(s)	183, 518, 932
Fsp4HI	GCNGC	7 cut(s)	56, 226, 498, 636, 639, 917, 990
FspBI	CTAG	2 cut(s)	951, 966
FspI	TGCGCA	1 cut(s)	768
GlaI	GCGC	3 cut(s)	768, 876, 1004
GluI	GCNGC	7 cut(s)	56, 226, 498, 636, 639, 917, 990
GsuI	CTGGAG	4 cut(s)	28, 459, 636, 642
HaeII	RGCGCY	1 cut(s)	1006
HaeIII	GGCC	3 cut(s)	55, 453, 627
HapII	CCGG	2 cut(s)	304, 752
HgaI	GACGC	1 cut(s)	248
HhaI	GCGC	3 cut(s)	769, 877, 1005
Hin1II	CATG	4 cut(s)	287, 741, 833, 859
Hin6I	GCGC	3 cut(s)	767, 875, 1003
HinP1I	GCGC	3 cut(s)	767, 875, 1003
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	2 cut(s)	304, 752
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	4 cut(s)	133, 281, 346, 827
Hpy188I	TCNGA	6 cut(s)	126, 686, 715, 888, 934, 1009
Hpy188III	TCNNGA	3 cut(s)	7, 347, 438
Hpy8I	GTNNAC	4 cut(s)	133, 281, 346, 827
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	3 cut(s)	69, 357, 464
HpyCH4III	ACNGT	5 cut(s)	47, 137, 166, 552, 775
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	6 cut(s)	149, 382, 407, 500, 728, 959
HpyF10VI	GCNNNNNNNGC	6 cut(s)	64, 222, 234, 494, 571, 647
HpyF3I	CTNAG	4 cut(s)	94, 243, 396, 1006
HpySE526I	ACGT	1 cut(s)	16
Hsp92II	CATG	4 cut(s)	287, 741, 833, 859
HspAI	GCGC	3 cut(s)	767, 875, 1003
Kzo9I	GATC	4 cut(s)	349, 434, 799, 995
LguI	GCTCTTC	1 cut(s)	812
LmnI	GCTCC	3 cut(s)	430, 617, 864
Lsp1109I	GCAGC	5 cut(s)	237, 484, 625, 928, 976
LweI	GCATC	1 cut(s)	954
MaeI	CTAG	2 cut(s)	951, 966
MaeII	ACGT	1 cut(s)	16
MaeIII	GTNAC	3 cut(s)	89, 479, 968
MalI	GATC	4 cut(s)	351, 436, 801, 997
MboI	GATC	4 cut(s)	349, 434, 799, 995
MboII	GAAGA	6 cut(s)	132, 673, 714, 826, 829, 860
MflI	RGATCY	1 cut(s)	434
MluCI	AATT	5 cut(s)	205, 251, 677, 784, 937
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	82
MroXI	GAANNNNTTC	3 cut(s)	109, 609, 680
MseI	TTAA	2 cut(s)	231, 1021
MspI	CCGG	2 cut(s)	304, 752
MspR9I	CCNGG	2 cut(s)	447, 615
Mva1269I	GAATGC	1 cut(s)	305
MvaI	CCWGG	2 cut(s)	447, 615
MwoI	GCNNNNNNNGC	6 cut(s)	64, 222, 234, 494, 571, 647
NcoI	CCATGG	1 cut(s)	737
NdeII	GATC	4 cut(s)	349, 434, 799, 995
NlaIII	CATG	4 cut(s)	287, 741, 833, 859
NmuCI	GTSAC	1 cut(s)	89
NsbI	TGCGCA	1 cut(s)	768
NspI	RCATGY	1 cut(s)	859
PceI	AGGCCT	1 cut(s)	627
PciSI	GCTCTTC	1 cut(s)	812
PctI	GAATGC	1 cut(s)	305
PdmI	GAANNNNTTC	3 cut(s)	109, 609, 680
PfoI	TCCNGGA	1 cut(s)	613
PkrI	GCNGC	7 cut(s)	57, 227, 499, 637, 640, 918, 991
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
PpuMI	RGGWCCY	1 cut(s)	443
Psp5II	RGGWCCY	1 cut(s)	443
Psp6I	CCWGG	2 cut(s)	445, 613
PspGI	CCWGG	2 cut(s)	445, 613
PspPI	GGNCC	2 cut(s)	53, 443
PspPPI	RGGWCCY	1 cut(s)	443
PsrI	GAACNNNNNNTAC	2 cut(s)	327, 359
PsuI	RGATCY	1 cut(s)	434
RsaI	GTAC	2 cut(s)	511, 851
RsaNI	GTAC	2 cut(s)	510, 850
SapI	GCTCTTC	1 cut(s)	812
SaqAI	TTAA	2 cut(s)	231, 1021
SatI	GCNGC	7 cut(s)	56, 226, 498, 636, 639, 917, 990
Sau3AI	GATC	4 cut(s)	349, 434, 799, 995
Sau96I	GGNCC	2 cut(s)	53, 443
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	2 cut(s)	447, 615
SfaNI	GCATC	1 cut(s)	954
SinI	GGWCC	1 cut(s)	443
Sse9I	AATT	5 cut(s)	205, 251, 677, 784, 937
SseBI	AGGCCT	1 cut(s)	627
SsiI	CCGC	4 cut(s)	56, 488, 635, 926
SspMI	CTAG	2 cut(s)	951, 966
StuI	AGGCCT	1 cut(s)	627
StyD4I	CCNGG	2 cut(s)	445, 613
StyI	CCWWGG	1 cut(s)	737
TaaI	ACNGT	5 cut(s)	47, 137, 166, 552, 775
TaiI	ACGT	1 cut(s)	19
TaqI	TCGA	2 cut(s)	73, 581
TasI	AATT	5 cut(s)	205, 251, 677, 784, 937
TatI	WGTACW	1 cut(s)	849
TauI	GCSGC	2 cut(s)	58, 638
Tru1I	TTAA	2 cut(s)	231, 1021
Tru9I	TTAA	2 cut(s)	231, 1021
TscAI	CASTG	4 cut(s)	151, 529, 557, 603
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	5 cut(s)	225, 497, 638, 916, 989
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	4 cut(s)	110, 689, 795, 795
TspRI	CASTG	4 cut(s)	151, 529, 557, 603
VpaK11BI	GGWCC	1 cut(s)	443
XapI	RAATTY	2 cut(s)	251, 677
XceI	RCATGY	1 cut(s)	859
XmnI	GAANNNNTTC	3 cut(s)	109, 609, 680
XspI	CTAG	2 cut(s)	951, 966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.