AT5G65160

tetratricopeptide repeat (TPR)-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
26031184 .. 26034030
2847 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G65160.1

Sequence Viewer

Length: 1782 bp
ATGGAGGAGAACACGGCGGTGGCTGCGGCGGAGAGAAGATCAGGTTGTGGTTTATTGAGTGTAATGTTTGGTAGACGTGGCTTGTGGTCCAAGAAATCTACCGCTGTCGATAACGGTAGCCAGAAAAGCACATCTACGGCTGCGACCGCAACAAGCAACATTCAATTCACTAAATCTCCGGGCACCGAGTTAAAGAAGCCGCGTGATGATCAGAAAGTTTCCGCTGAGCCAATCCAGAATAACAAGATCCAGAACAACCAAAATCACAACCAGAGATCCGTAGTTCCATCAAAACCCTCGTCAAATCAGTACCCTAATAACCATCAATTAGGGACTTACGAGAATCACCAACGAAGTAGTTATAACAACAATAGTAATAGTGTTGATCCATATCGAGGAGGAGGAGGACAGAGGAAAGTGCCAAGAGAAGCCATTGGTTTATCGGGTGAGCTTGAAAGCATGATCACGGATCATCAGAAAGCAAAAGGAACCAATGGATTGGTTCGTGCATCTTCTAGCAATATAATGTTATATGGTAATCTTGGCAATTTGAATCAGACTGGACCTGTAACTGCGGGTGTAAATTACGGTAATAACAATGGATATGGCGTGAAGAGGACGACAATGGGGGCTGCAACGGCGACGACAACAAAGAGTCAAGATCAATCAGGATCTTTGTGTAGAGCAATCTCAACAAGAATGGATCCGGAAACTTTGAAGATCATGGGGAATGAAGATTACAAGAATGGGAATTTCGCAGAGGCTTTAGCATTGTATGATGCAGCCATTGCAATTGATCCAAACAAAGCTGCTTACCGTAGCAACAAGAGCGCGGCTTTGACCGCCCTAGGGAGAATCCTTGACGCGGTTTTTGAATGCAGAGAAGCAATCAGAATTGAGCCTCATTACCACAGAGCACATCATAGGTTGGGTAACTTGTACCTCAGGTTAGGAGAAGTGGAGAAATCGATATATCATTTCAAACATTCGGGTCCCGAAGCTGATCGTGAAGACATTGCAAAGGCGAAAACGGTACAGACACATCTCAACAAATGCACAGAAGCTAAGAGATTACGAGATTGGAATGGTTTGATTACGGAGACAACAAACACAATCTCTTCAGGAGCTGATGCAGCCCCTCAGGTCTATGCATTGCAAGCAGAAGCTTTGTTGAAGACACATAGACATCAAGAAGCTGATGATGCTTTGTCTAGATGTCCGGTTTTCGATATTGATGCTAGTACTAGGTACTACGGACCGGTCGGTTATGCTGGTTTCTTGGTCGTCCGTGCTCAGGTTCACTTAGCGTCTGGCAGATTCGACGAGGCGGTGGAGGCGATCCAACGCGCCGGGAAGCTGGACGGGAATAACCGAGAGGTGATTATGATTTCACGACGGGCACAAGCGGTGACTGAAGCTCGGTTTAAAGGAAACGAGCTGTTTAAATCTGGACGGTTCCAAGAGGCGTGCGCCGCTTATGGTGAGGGATTAGATCACGATCCACGAAACTCTGTTTTGCTCTGTAACCGCGCGGCTTGTCGGTCAAAATTGGGTCAATTTGATAAATCTATAGAGGATTGCACGGCGGCTCTCTCCGTCCGGCCGGGATATGGTAAGGCTCGCCTCAGAAGAGCCGATTGTAACGCCAAGATCGAAAAGTGGGAATTAGCGGTGGGTGACTACGAGATATTGAAAAAGGAGTCGCCGGAGGATGAGCAAGTTATCAGAGGATTATCAGAGGCTCAACAACAACTCATGAAACGTAGTGGACAAGACTCTTGA

Protein Analysis

593

Amino Acids

65.02

Weight (kDa)

9.11

Isoelectric Point (pI)

38.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_1 PF00515 506 - 537 9e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014560)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 363
AccB1I GGYRCC 1 cut(s) 182
AccI GTMKAC 1 cut(s) 73
AccII CGCG 6 cut(s) 202, 833, 866, 1347, 1530, 1532
AccIII TCCGGA 1 cut(s) 706
AcoI YGGCCR 1 cut(s) 1601
AcsI RAATTY 1 cut(s) 751
AcuI CTGAAG 2 cut(s) 1104, 1434
AfaI GTAC 5 cut(s) 311, 941, 1035, 1243, 1250
AfiI CCNNNNNNNGG 5 cut(s) 395, 849, 865, 1294, 1610
AgeI ACCGGT 1 cut(s) 1258
AgsI TTSAA 8 cut(s) 164, 455, 553, 718, 875, 982, 1174, 1693
AjiI CACGTC 1 cut(s) 77
AleI CACNNNNGTG 1 cut(s) 17
Alw21I GWGCWC 2 cut(s) 919, 1294
Alw26I GTCTC 1 cut(s) 1094
AlwNI CAGNNNCTG 1 cut(s) 1127
Aor13HI TCCGGA 1 cut(s) 706
AoxI GGCC 1 cut(s) 1601
ApeKI GCWGC 6 cut(s) 23, 140, 632, 782, 809, 1133
ApoI RAATTY 1 cut(s) 751
ArsI GACNNNNNNTTYG 4 cut(s) 284, 316, 854, 886
AsiGI ACCGGT 1 cut(s) 1258
AspA2I CCTAGG 1 cut(s) 847
AspLEI GCGC 4 cut(s) 833, 1349, 1472, 1532
AspS9I GGNCC 4 cut(s) 87, 563, 992, 1256
AsuC2I CCSGG 3 cut(s) 180, 1351, 1605
AsuHPI GGTGA 6 cut(s) 338, 458, 1390, 1420, 1493, 1688
AvaII GGWCC 4 cut(s) 87, 563, 992, 1256
AvrII CCTAGG 1 cut(s) 847
AxyI CCTNAGG 2 cut(s) 944, 1140
BaeGI GKGCMC 2 cut(s) 185, 1402
BamHI GGATCC 1 cut(s) 703
BanI GGYRCC 1 cut(s) 182
BbsI GAAGAC 2 cut(s) 1017, 1181
Bbv12I GWGCWC 2 cut(s) 919, 1294
BbvI GCAGC 6 cut(s) 10, 127, 619, 794, 796, 1145
BccI CCATC 2 cut(s) 295, 330
BceAI ACGGC 4 cut(s) 30, 153, 654, 1599
BcgI CGANNNNNNTGC 2 cut(s) 1217, 1251
BclI TGATCA 2 cut(s) 208, 462
BcnI CCSGG 3 cut(s) 180, 1351, 1605
BcoDI GTCTC 1 cut(s) 1094
BfaI CTAG 5 cut(s) 516, 848, 1212, 1239, 1245
BfmI CTRYAG 1 cut(s) 1569
BlnI CCTAGG 1 cut(s) 847
BlpI GCTNAGC 1 cut(s) 225
BmcAI AGTACT 1 cut(s) 1243
Bme1390I CCNGG 3 cut(s) 180, 1351, 1605
Bme18I GGWCC 4 cut(s) 87, 563, 992, 1256
BmgBI CACGTC 1 cut(s) 77
BmgT120I GGNCC 4 cut(s) 87, 563, 992, 1256
BmiI GGNNCC 6 cut(s) 184, 490, 705, 993, 994, 1457
BmrFI CCNGG 3 cut(s) 180, 1351, 1605
BmsI GCATC 5 cut(s) 518, 769, 1120, 1192, 1225
BpiI GAAGAC 2 cut(s) 1017, 1181
Bpu10I CCTNAGC 1 cut(s) 1293
Bpu1102I GCTNAGC 1 cut(s) 225
BpuMI CCSGG 3 cut(s) 180, 1351, 1605
Bsa29I ATCGAT 1 cut(s) 968
BsaBI GATNNNNATC 2 cut(s) 390, 1497
BsaJI CCNNGG 1 cut(s) 847
BsaWI WCCGGW 3 cut(s) 706, 1219, 1258
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 5 cut(s) 395, 849, 865, 1294, 1610
Bse118I RCCGGY 1 cut(s) 1258
Bse1I ACTGG 1 cut(s) 565
Bse21I CCTNAGG 2 cut(s) 944, 1140
Bse3DI GCAATG 3 cut(s) 786, 1014, 1151
Bse8I GATNNNNATC 2 cut(s) 390, 1497
BseAI TCCGGA 1 cut(s) 706
BseCI ATCGAT 1 cut(s) 968
BseDI CCNNGG 1 cut(s) 847
BseGI GGATG 1 cut(s) 1717
BseJI GATNNNNATC 2 cut(s) 390, 1497
BseLI CCNNNNNNNGG 5 cut(s) 395, 849, 865, 1294, 1610
BseMI GCAATG 3 cut(s) 786, 1014, 1151
BseMII CTCAG 5 cut(s) 216, 958, 1154, 1307, 1639
BseNI ACTGG 1 cut(s) 565
BseRI GAGGAG 4 cut(s) 20, 411, 414, 417
BseSI GKGCMC 2 cut(s) 185, 1402
BseX3I CGGCCG 1 cut(s) 1601
BseXI GCAGC 6 cut(s) 10, 127, 619, 794, 796, 1145
Bsh1236I CGCG 6 cut(s) 202, 833, 866, 1347, 1530, 1532
Bsh1285I CGRYCG 3 cut(s) 147, 1263, 1604
BshFI GGCC 1 cut(s) 1603
BshNI GGYRCC 1 cut(s) 182
BshTI ACCGGT 1 cut(s) 1258
BshVI ATCGAT 1 cut(s) 968
BsiEI CGRYCG 3 cut(s) 147, 1263, 1604
BsiHKAI GWGCWC 2 cut(s) 919, 1294
BsiSI CCGG 8 cut(s) 179, 707, 1220, 1259, 1350, 1600, 1604, 1706
BslFI GGGAC 2 cut(s) 346, 978
BslI CCNNNNNNNGG 5 cut(s) 395, 849, 865, 1294, 1610
BsmAI GTCTC 1 cut(s) 1094
BsmFI GGGAC 2 cut(s) 346, 978
BsmI GAATGC 1 cut(s) 881
BsnI GGCC 1 cut(s) 1603
Bsp1286I GDGCHC 4 cut(s) 185, 919, 1294, 1402
Bsp13I TCCGGA 1 cut(s) 706
Bsp1720I GCTNAGC 1 cut(s) 225
BspANI GGCC 1 cut(s) 1603
BspCNI CTCAG 5 cut(s) 217, 957, 1153, 1306, 1638
BspDI ATCGAT 1 cut(s) 968
BspEI TCCGGA 1 cut(s) 706
BspFNI CGCG 6 cut(s) 202, 833, 866, 1347, 1530, 1532
BspHI TCATGA 1 cut(s) 1755
BspLI GGNNCC 6 cut(s) 184, 490, 705, 993, 994, 1457
BspQI GCTCTTC 1 cut(s) 1624
BspT107I GGYRCC 1 cut(s) 182
BsrDI GCAATG 3 cut(s) 786, 1014, 1151
BsrFI RCCGGY 1 cut(s) 1258
BsrI ACTGG 1 cut(s) 565
BssAI RCCGGY 1 cut(s) 1258
BssECI CCNNGG 1 cut(s) 847
BssT1I CCWWGG 1 cut(s) 847
Bst4CI ACNGT 5 cut(s) 116, 590, 818, 1033, 1455
Bst6I CTCTTC 3 cut(s) 608, 1123, 1624
BstAPI GCANNNNNTGC 1 cut(s) 788
BstC8I GCNNGC 3 cut(s) 1158, 1468, 1621
BstDEI CTNAG 7 cut(s) 225, 944, 1065, 1140, 1293, 1303, 1625
BstF5I GGATG 1 cut(s) 1717
BstFNI CGCG 6 cut(s) 202, 833, 866, 1347, 1530, 1532
BstHHI GCGC 4 cut(s) 833, 1349, 1472, 1532
BstMAI GTCTC 1 cut(s) 1094
BstMCI CGRYCG 3 cut(s) 147, 1263, 1604
BstSCI CCNGG 3 cut(s) 178, 1349, 1603
BstSFI CTRYAG 1 cut(s) 1569
BstSLI GKGCMC 2 cut(s) 185, 1402
BstUI CGCG 6 cut(s) 202, 833, 866, 1347, 1530, 1532
BstV1I GCAGC 6 cut(s) 10, 127, 619, 794, 796, 1145
BstV2I GAAGAC 2 cut(s) 1017, 1181
BstX2I RGATCY 4 cut(s) 246, 275, 671, 703
BstXI CCANNNNNNTGG 1 cut(s) 499
BstYI RGATCY 4 cut(s) 246, 275, 671, 703
BstZI CGGCCG 1 cut(s) 1601
Bsu15I ATCGAT 1 cut(s) 968
Bsu36I CCTNAGG 2 cut(s) 944, 1140
BsuRI GGCC 1 cut(s) 1603
BsuTUI ATCGAT 1 cut(s) 968
BtrI CACGTC 1 cut(s) 77
BtsCI GGATG 1 cut(s) 1717
Cac8I GCNNGC 3 cut(s) 1158, 1468, 1621
CaiI CAGNNNCTG 1 cut(s) 1127
CciI TCATGA 1 cut(s) 1755
CfoI GCGC 4 cut(s) 833, 1349, 1472, 1532
Cfr10I RCCGGY 1 cut(s) 1258
Cfr13I GGNCC 4 cut(s) 87, 563, 992, 1256
ClaI ATCGAT 1 cut(s) 968
CpoI CGGWCCG 1 cut(s) 1256
CseI GACGC 2 cut(s) 872, 1296
Csp6I GTAC 5 cut(s) 310, 940, 1034, 1242, 1249
CspAI ACCGGT 1 cut(s) 1258
CspI CGGWCCG 1 cut(s) 1256
CviAII CATG 3 cut(s) 460, 724, 1756
CviQI GTAC 5 cut(s) 310, 940, 1034, 1242, 1249
DdeI CTNAG 7 cut(s) 225, 944, 1065, 1140, 1293, 1303, 1625
DraI TTTAAA 2 cut(s) 1426, 1444
EaeI YGGCCR 1 cut(s) 1601
EagI CGGCCG 1 cut(s) 1601
Eam1104I CTCTTC 3 cut(s) 608, 1123, 1624
EarI CTCTTC 3 cut(s) 608, 1123, 1624
EciI GGCGGA 1 cut(s) 44
EclXI CGGCCG 1 cut(s) 1601
Eco130I CCWWGG 1 cut(s) 847
Eco47I GGWCC 4 cut(s) 87, 563, 992, 1256
Eco52I CGGCCG 1 cut(s) 1601
Eco57I CTGAAG 2 cut(s) 1104, 1434
Eco81I CCTNAGG 2 cut(s) 944, 1140
EcoO109I RGGNCCY 1 cut(s) 992
EcoT14I CCWWGG 1 cut(s) 847
EcoT22I ATGCAT 1 cut(s) 1153
ErhI CCWWGG 1 cut(s) 847
FaeI CATG 3 cut(s) 463, 727, 1759
FaqI GGGAC 2 cut(s) 346, 978
FatI CATG 3 cut(s) 459, 723, 1755
FauI CCCGC 1 cut(s) 568
FbaI TGATCA 2 cut(s) 208, 462
FblI GTMKAC 1 cut(s) 73
FokI GGATG 1 cut(s) 1724
FspBI CTAG 5 cut(s) 516, 848, 1212, 1239, 1245
GlaI GCGC 4 cut(s) 832, 1348, 1471, 1531
HaeIII GGCC 1 cut(s) 1603
HapII CCGG 8 cut(s) 179, 707, 1220, 1259, 1350, 1600, 1604, 1706
HgaI GACGC 2 cut(s) 872, 1296
HhaI GCGC 4 cut(s) 833, 1349, 1472, 1532
Hin1II CATG 3 cut(s) 463, 727, 1759
Hin6I GCGC 4 cut(s) 831, 1347, 1470, 1530
HinP1I GCGC 4 cut(s) 831, 1347, 1470, 1530
HindIII AAGCTT 1 cut(s) 1164
HinfI GANTC 7 cut(s) 343, 553, 655, 855, 1317, 1700, 1775
HpaII CCGG 8 cut(s) 179, 707, 1220, 1259, 1350, 1600, 1604, 1706
HphI GGTGA 6 cut(s) 338, 458, 1390, 1420, 1493, 1688
Hpy166II GTNNAC 3 cut(s) 74, 1300, 1769
Hpy188I TCNGA 7 cut(s) 213, 477, 558, 893, 1628, 1727, 1738
Hpy8I GTNNAC 3 cut(s) 74, 1300, 1769
Hpy99I CGWCG 3 cut(s) 646, 1325, 1398
HpyCH4III ACNGT 5 cut(s) 116, 590, 818, 1033, 1455
HpyCH4IV ACGT 2 cut(s) 76, 1762
HpyF3I CTNAG 7 cut(s) 225, 944, 1065, 1140, 1293, 1303, 1625
HpySE526I ACGT 2 cut(s) 76, 1762
Hsp92II CATG 3 cut(s) 463, 727, 1759
HspAI GCGC 4 cut(s) 831, 1347, 1470, 1530
KflI GGGWCCC 1 cut(s) 992
Kpn2I TCCGGA 1 cut(s) 706
Ksp22I TGATCA 2 cut(s) 208, 462
LguI GCTCTTC 1 cut(s) 1624
LmnI GCTCC 1 cut(s) 1124
Lsp1109I GCAGC 6 cut(s) 10, 127, 619, 794, 796, 1145
LweI GCATC 5 cut(s) 518, 769, 1120, 1192, 1225
MaeI CTAG 5 cut(s) 516, 848, 1212, 1239, 1245
MaeII ACGT 2 cut(s) 76, 1762
MaeIII GTNAC 6 cut(s) 568, 932, 1408, 1523, 1640, 1676
MboII GAAGA 9 cut(s) 48, 504, 625, 730, 746, 1022, 1110, 1186, 1641
MfeI CAATTG 1 cut(s) 792
MflI RGATCY 4 cut(s) 246, 275, 671, 703
MhlI GDGCHC 4 cut(s) 185, 919, 1294, 1402
MlyI GAGTC 3 cut(s) 664, 1709, 1769
MmeI TCCRAC 1 cut(s) 1366
Mph1103I ATGCAT 1 cut(s) 1153
MroI TCCGGA 1 cut(s) 706
MseI TTAA 3 cut(s) 191, 1425, 1443
MslI CAYNNNNRTG 1 cut(s) 17
MspA1I CMGCKG 2 cut(s) 104, 224
MspI CCGG 8 cut(s) 179, 707, 1220, 1259, 1350, 1600, 1604, 1706
MspR9I CCNGG 3 cut(s) 180, 1351, 1605
MunI CAATTG 1 cut(s) 792
Mva1269I GAATGC 1 cut(s) 881
MvnI CGCG 6 cut(s) 202, 833, 866, 1347, 1530, 1532
NciI CCSGG 3 cut(s) 180, 1351, 1605
NlaIII CATG 3 cut(s) 463, 727, 1759
NlaIV GGNNCC 6 cut(s) 184, 490, 705, 993, 994, 1457
NmuCI GTSAC 2 cut(s) 1408, 1676
NsiI ATGCAT 1 cut(s) 1153
OliI CACNNNNGTG 1 cut(s) 17
PagI TCATGA 1 cut(s) 1755
PciSI GCTCTTC 1 cut(s) 1624
PcsI WCGNNNNNNNCGW 1 cut(s) 1650
PctI GAATGC 1 cut(s) 881
PfeI GAWTC 4 cut(s) 343, 553, 855, 1317
PinAI ACCGGT 1 cut(s) 1258
PleI GAGTC 3 cut(s) 663, 1708, 1769
PpsI GAGTC 3 cut(s) 663, 1708, 1769
PpuMI RGGWCCY 1 cut(s) 992
PsiI TTATAA 1 cut(s) 363
Psp5II RGGWCCY 1 cut(s) 992
PspN4I GGNNCC 6 cut(s) 184, 490, 705, 993, 994, 1457
PspPI GGNCC 4 cut(s) 87, 563, 992, 1256
PspPPI RGGWCCY 1 cut(s) 992
PstNI CAGNNNCTG 1 cut(s) 1127
PsuI RGATCY 4 cut(s) 246, 275, 671, 703
RsaI GTAC 5 cut(s) 311, 941, 1035, 1243, 1250
RsaNI GTAC 5 cut(s) 310, 940, 1034, 1242, 1249
RseI CAYNNNNRTG 1 cut(s) 17
Rsr2I CGGWCCG 1 cut(s) 1256
RsrII CGGWCCG 1 cut(s) 1256
SapI GCTCTTC 1 cut(s) 1624
SaqAI TTAA 3 cut(s) 191, 1425, 1443
Sau96I GGNCC 4 cut(s) 87, 563, 992, 1256
ScaI AGTACT 1 cut(s) 1243
SchI GAGTC 3 cut(s) 664, 1709, 1769
ScrFI CCNGG 3 cut(s) 180, 1351, 1605
SduI GDGCHC 4 cut(s) 185, 919, 1294, 1402
SfaNI GCATC 5 cut(s) 518, 769, 1120, 1192, 1225
SfcI CTRYAG 1 cut(s) 1569
SinI GGWCC 4 cut(s) 87, 563, 992, 1256
SmiMI CAYNNNNRTG 1 cut(s) 17
SspMI CTAG 5 cut(s) 516, 848, 1212, 1239, 1245
StyD4I CCNGG 3 cut(s) 178, 1349, 1603
StyI CCWWGG 1 cut(s) 847
TaaI ACNGT 5 cut(s) 116, 590, 818, 1033, 1455
TaiI ACGT 2 cut(s) 79, 1765
TaqI TCGA 6 cut(s) 108, 394, 968, 1227, 1320, 1653
TaqII GACCGA 1 cut(s) 1530
TatI WGTACW 1 cut(s) 1241
TauI GCSGC 6 cut(s) 29, 202, 836, 1475, 1535, 1589
TfiI GAWTC 4 cut(s) 343, 553, 855, 1317
Tru1I TTAA 3 cut(s) 191, 1425, 1443
Tru9I TTAA 3 cut(s) 191, 1425, 1443
TseFI GTSAC 2 cut(s) 1408, 1676
TseI GCWGC 6 cut(s) 23, 140, 632, 782, 809, 1133
Tsp45I GTSAC 2 cut(s) 1408, 1676
TspDTI ATGAA 2 cut(s) 747, 1772
TspGWI ACGGA 6 cut(s) 268, 482, 1112, 1269, 1277, 1585
VpaK11BI GGWCC 4 cut(s) 87, 563, 992, 1256
XapI RAATTY 1 cut(s) 751
XbaI TCTAGA 1 cut(s) 1211
XmaJI CCTAGG 1 cut(s) 847
XmiI GTMKAC 1 cut(s) 73
XspI CTAG 5 cut(s) 516, 848, 1212, 1239, 1245
ZrmI AGTACT 1 cut(s) 1243
Zsp2I ATGCAT 1 cut(s) 1153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.