Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0014560

Physical Location & Seq

Genomic Coordinates Forward (+)

27577193 .. 27581084

Gene Structure 3892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG260000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGGGAGAGTCGCCGGAGAAGAAATCAGGTTGCGGCATTTTGAATGCTGTGTTTGGACGGAGCAGTTTTTGGCCAAGAAGAACAACTTCCACGGGCTCCCTTCCCGTCAGTGGCAATCAGTTTGTGAAAACACCAAGTGGTAACTCTAGAAGGCGGCGTGGTGGCTCCGATGAGGCATCATTTCTTGACGTGTCATCGGCTAATGGATCAGAATCTTCATCAAAACCCGTCACAAAACCATCTCAATATAGTAACAGAGCGCCCCCTATACAGCCACATCAAAATCAGGGTAGAAGTACTAAGCCACCTCAGGAAGCTGGAGCCATGGTTTCACGTCCAGGCCAAGGCCAACAAGGAGCAATGAGAATGGCTCCGAGTCAAGGTTATGTTAATCAAGGCAAAAGGGTTCCCAAGGAAGCAGTTGGGTTGTCTGGTGAGCTTGATAGCATGATTACTGATCACCAGAAATCAAAAGGGAGTAGCACATTCGTTAGAGCTTCATCCGGCAATGTGATGCTTTTTGGTAACCTGGGTAACTTGAGAACAGGAGGTGGTGGAGGCGGTGGTGGAAATGCGAACTCAAATAACGTGCTGGATTACCTTCCAAAGACAGCAAGAGAAGAAACCCCAATGATGATGAATGGAAATGTAGGGAAGAGTAGTGCTCCTAAAGAAGAGAAAAAACCAAGTTCGCAAAATCAGCCTACTTCATTTTGTCGCGCATTATCAACAAGGATGGACCCCGAGACACTGAAGATTATGGGCAATGAGGATTACAAGAATGGAAGATTTGAAGAGGCTTTGTCTTTGTATGACGCTGCAATTTCTATTGACCCCGATAAGGCTTCATATAGGAGCAACAAGAGTGCTGCATTAACTGCTCTTGGTCAAATTCTTGAGGCAATTTTTGAGTGCAGAGAAGCCATTCGGATTGAACCTCATTATCATAGGGCTCACCATCGTCTTGCAACCTTATACATTAGATTAGGGGAAGCTGAAAAAGCTACATATCACTATAAACATTCTGGACCAGAGGCTGATCAAGAGGACTTGGCTAAAGTGAGATCTCTTCAGGCTCTTCTGAACAAGTGCACAGAGGCTCGTAGGTTAAGAGATTGGAACACCTTGATCAAGGAAACACAAAACGTTATAGCAGCTGGTGCAGATTCAGCACCACAGGTCAGCCTACTAAATTTCAAACTCATCTTTATTACAATTACATATCAATCGTCCATAATATCAGATTTAATGGGTGAAAATCATATCTGTATTCAAAACTATGTACATAAATGCACATACACTTGCACACCATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010305 GO:0014070 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043401 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_11 TPR_16 TPR_17 TPR_2 TPR_7 TPR_8 Thioredoxin

Protein Analysis

438

Amino Acids

47.66

Weight (kDa)

9.34

Isoelectric Point (pI)

50.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_11	PF13414	255 - 287	2.6e-06	TPR repeat
TPR_19	PF14559	293 - 361	8.2e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10090 AT5G65160
fragaria_vesca	FvH4_1g21140
malus_domestica	MD01G1027500.v1.1 MD15G1326400.v1.1
prunus_persica	Prupe.6G182700_v2.0.a1 Prupe.6G182700_v2.0.a1
pyrus_communis	pycom15g28750
rosa_chinensis	RchiOBHm_Chr2g0114921
rosa_laevigata	RLG00000018135
rosa_roxburghii	Rroxscaffold_2G00130450
rosa_rugosa	Rorug02G0191800
rosa_samantha	Rh2AG250600 Rh2BG260000 Rh2CG254800 Rh2DG258700
rosa_wichuraiana	Rw2G019530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	720
AciI	CCGC	3 cut(s)	33, 154, 561
AclI	AACGTT	1 cut(s)	1146
AclWI	GGATC	1 cut(s)	214
AcoI	YGGCCR	1 cut(s)	71
AcsI	RAATTY	2 cut(s)	891, 1192
AcuI	CTGAAG	2 cut(s)	773, 1055
AdeI	CACNNNGTG	1 cut(s)	137
AfaI	GTAC	2 cut(s)	298, 1284
AfiI	CCNNNNNNNGG	4 cut(s)	110, 344, 380, 841
AflIII	ACRYGT	1 cut(s)	189
AgsI	TTSAA	5 cut(s)	43, 794, 935, 1198, 1274
AjiI	CACGTC	2 cut(s)	190, 335
AjnI	CCWGG	2 cut(s)	337, 528
AluBI	AGCT	6 cut(s)	317, 439, 497, 995, 1004, 1157
AluI	AGCT	6 cut(s)	317, 439, 497, 995, 1004, 1157
Alw21I	GWGCWC	2 cut(s)	667, 1094
Alw26I	GTCTC	1 cut(s)	740
Alw44I	GTGCAC	1 cut(s)	1090
AlwI	GGATC	1 cut(s)	214
AlwNI	CAGNNNCTG	1 cut(s)	1037
Ama87I	CYCGRG	1 cut(s)	743
AoxI	GGCC	3 cut(s)	71, 340, 346
ApaLI	GTGCAC	1 cut(s)	1090
ApeKI	GCWGC	3 cut(s)	818, 869, 1154
ApoI	RAATTY	2 cut(s)	891, 1192
Asp700I	GAANNNNTTC	2 cut(s)	85, 924
AspLEI	GCGC	2 cut(s)	262, 722
AspS9I	GGNCC	2 cut(s)	739, 1028
AsuHPI	GGTGA	4 cut(s)	446, 452, 947, 1265
AvaI	CYCGRG	1 cut(s)	743
AvaII	GGWCC	2 cut(s)	739, 1028
AxyI	CCTNAGG	1 cut(s)	309
BaeGI	GKGCMC	1 cut(s)	1094
BalI	TGGCCA	1 cut(s)	73
BanII	GRGCYC	2 cut(s)	98, 955
Bbv12I	GWGCWC	2 cut(s)	667, 1094
BbvI	GCAGC	3 cut(s)	805, 856, 1166
BccI	CCATC	3 cut(s)	247, 730, 966
BciT130I	CCWGG	2 cut(s)	339, 530
BclI	TGATCA	3 cut(s)	457, 1039, 1128
BcoDI	GTCTC	1 cut(s)	740
BfaI	CTAG	1 cut(s)	147
BfoI	RGCGCY	1 cut(s)	263
BglII	AGATCT	1 cut(s)	1064
BisI	GCNGC	5 cut(s)	34, 155, 819, 870, 1155
BlsI	GCNGC	5 cut(s)	35, 156, 820, 871, 1156
BmcAI	AGTACT	1 cut(s)	298
Bme1390I	CCNGG	2 cut(s)	339, 530
Bme18I	GGWCC	2 cut(s)	739, 1028
BmeT110I	CYCGRG	1 cut(s)	743
BmgBI	CACGTC	2 cut(s)	190, 335
BmgT120I	GGNCC	2 cut(s)	739, 1028
BmiI	GGNNCC	6 cut(s)	97, 166, 322, 372, 408, 741
BmrFI	CCNGG	2 cut(s)	339, 530
BmsI	GCATC	2 cut(s)	185, 504
BplI	GAGNNNNNCTC	4 cut(s)	355, 387, 649, 681
BpmI	CTGGAG	1 cut(s)	339
BpuEI	CTTGAG	2 cut(s)	559, 917
BsaBI	GATNNNNATC	1 cut(s)	211
BsaJI	CCNNGG	5 cut(s)	90, 324, 343, 411, 529
BsaXI	ACNNNNNCTCC	2 cut(s)	312, 342
Bsc4I	CCNNNNNNNGG	4 cut(s)	110, 344, 380, 841
Bse21I	CCTNAGG	1 cut(s)	309
Bse3DI	GCAATG	3 cut(s)	366, 514, 772
Bse8I	GATNNNNATC	1 cut(s)	211
BseBI	CCWGG	2 cut(s)	339, 530
BseDI	CCNNGG	5 cut(s)	90, 324, 343, 411, 529
BseGI	GGATG	2 cut(s)	500, 741
BseJI	GATNNNNATC	1 cut(s)	211
BseLI	CCNNNNNNNGG	4 cut(s)	110, 344, 380, 841
BseMI	GCAATG	3 cut(s)	366, 514, 772
BseMII	CTCAG	1 cut(s)	323
BseSI	GKGCMC	1 cut(s)	1094
BseXI	GCAGC	3 cut(s)	805, 856, 1166
BsgI	GTGCAG	2 cut(s)	934, 1182
Bsh1236I	CGCG	1 cut(s)	720
BshFI	GGCC	3 cut(s)	73, 342, 348
BsiHKAI	GWGCWC	2 cut(s)	667, 1094
BsiHKCI	CYCGRG	1 cut(s)	743
BsiSI	CCGG	2 cut(s)	14, 504
BslI	CCNNNNNNNGG	4 cut(s)	110, 344, 380, 841
BsmAI	GTCTC	1 cut(s)	740
BsmI	GAATGC	1 cut(s)	49
BsnI	GGCC	3 cut(s)	73, 342, 348
BsoBI	CYCGRG	1 cut(s)	743
Bsp1286I	GDGCHC	4 cut(s)	98, 667, 955, 1094
Bsp1407I	TGTACA	1 cut(s)	1282
Bsp143I	GATC	5 cut(s)	206, 457, 1039, 1064, 1128
Bsp19I	CCATGG	1 cut(s)	324
BspACI	CCGC	3 cut(s)	33, 154, 561
BspANI	GGCC	3 cut(s)	73, 342, 348
BspCNI	CTCAG	1 cut(s)	322
BspFNI	CGCG	1 cut(s)	720
BspLI	GGNNCC	6 cut(s)	97, 166, 322, 372, 408, 741
BspPI	GGATC	1 cut(s)	214
BspQI	GCTCTTC	1 cut(s)	1083
BsrDI	GCAATG	3 cut(s)	366, 514, 772
BsrGI	TGTACA	1 cut(s)	1282
BssECI	CCNNGG	5 cut(s)	90, 324, 343, 411, 529
BssMI	GATC	5 cut(s)	206, 457, 1039, 1064, 1128
BssT1I	CCWWGG	3 cut(s)	324, 343, 411
Bst2UI	CCWGG	2 cut(s)	339, 530
Bst6I	CTCTTC	5 cut(s)	650, 669, 789, 1074, 1083
BstAPI	GCANNNNNTGC	2 cut(s)	878, 1160
BstAUI	TGTACA	1 cut(s)	1282
BstDEI	CTNAG	2 cut(s)	300, 309
BstDSI	CCRYGG	2 cut(s)	90, 324
BstEII	GGTNACC	1 cut(s)	524
BstF5I	GGATG	2 cut(s)	500, 741
BstFNI	CGCG	1 cut(s)	720
BstH2I	RGCGCY	1 cut(s)	263
BstHHI	GCGC	2 cut(s)	262, 722
BstKTI	GATC	5 cut(s)	209, 460, 1042, 1067, 1131
BstMAI	GTCTC	1 cut(s)	740
BstMBI	GATC	5 cut(s)	206, 457, 1039, 1064, 1128
BstMWI	GCNNNNNNNGC	5 cut(s)	700, 878, 1001, 1160, 1169
BstNI	CCWGG	2 cut(s)	339, 530
BstPI	GGTNACC	1 cut(s)	524
BstSCI	CCNGG	2 cut(s)	337, 528
BstSLI	GKGCMC	1 cut(s)	1094
BstUI	CGCG	1 cut(s)	720
BstV1I	GCAGC	3 cut(s)	805, 856, 1166
BstX2I	RGATCY	1 cut(s)	1064
BstYI	RGATCY	1 cut(s)	1064
Bsu36I	CCTNAGG	1 cut(s)	309
BsuRI	GGCC	3 cut(s)	73, 342, 348
BtgI	CCRYGG	2 cut(s)	90, 324
BtrI	CACGTC	2 cut(s)	190, 335
BtsCI	GGATG	2 cut(s)	500, 741
BtsIMutI	CAGTG	2 cut(s)	115, 749
CaiI	CAGNNNCTG	1 cut(s)	1037
CfoI	GCGC	2 cut(s)	262, 722
Cfr13I	GGNCC	2 cut(s)	739, 1028
CseI	GACGC	1 cut(s)	824
Csp6I	GTAC	2 cut(s)	297, 1283
CviAII	CATG	2 cut(s)	325, 448
CviQI	GTAC	2 cut(s)	297, 1283
DdeI	CTNAG	2 cut(s)	300, 309
DpnI	GATC	5 cut(s)	208, 459, 1041, 1066, 1130
DpnII	GATC	5 cut(s)	206, 457, 1039, 1064, 1128
DraIII	CACNNNGTG	1 cut(s)	137
EaeI	YGGCCR	1 cut(s)	71
Eam1104I	CTCTTC	5 cut(s)	650, 669, 789, 1074, 1083
EarI	CTCTTC	5 cut(s)	650, 669, 789, 1074, 1083
Eco130I	CCWWGG	3 cut(s)	324, 343, 411
Eco24I	GRGCYC	2 cut(s)	98, 955
Eco47I	GGWCC	2 cut(s)	739, 1028
Eco57I	CTGAAG	2 cut(s)	773, 1055
Eco81I	CCTNAGG	1 cut(s)	309
Eco88I	CYCGRG	1 cut(s)	743
Eco91I	GGTNACC	1 cut(s)	524
EcoO65I	GGTNACC	1 cut(s)	524
EcoRII	CCWGG	2 cut(s)	337, 528
EcoT14I	CCWWGG	3 cut(s)	324, 343, 411
EcoT38I	GRGCYC	2 cut(s)	98, 955
ErhI	CCWWGG	3 cut(s)	324, 343, 411
FaeI	CATG	2 cut(s)	328, 451
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FatI	CATG	2 cut(s)	324, 447
FbaI	TGATCA	3 cut(s)	457, 1039, 1128
Fnu4HI	GCNGC	5 cut(s)	34, 155, 819, 870, 1155
FokI	GGATG	2 cut(s)	487, 748
FriOI	GRGCYC	2 cut(s)	98, 955
Fsp4HI	GCNGC	5 cut(s)	34, 155, 819, 870, 1155
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	2 cut(s)	261, 721
GluI	GCNGC	5 cut(s)	34, 155, 819, 870, 1155
GsuI	CTGGAG	1 cut(s)	339
HaeII	RGCGCY	1 cut(s)	263
HaeIII	GGCC	3 cut(s)	73, 342, 348
HapII	CCGG	2 cut(s)	14, 504
HgaI	GACGC	1 cut(s)	824
HhaI	GCGC	2 cut(s)	262, 722
Hin1II	CATG	2 cut(s)	328, 451
Hin6I	GCGC	2 cut(s)	260, 720
HinP1I	GCGC	2 cut(s)	260, 720
HinfI	GANTC	4 cut(s)	8, 212, 376, 1166
HpaII	CCGG	2 cut(s)	14, 504
HphI	GGTGA	4 cut(s)	446, 452, 947, 1265
Hpy166II	GTNNAC	1 cut(s)	1092
Hpy188I	TCNGA	6 cut(s)	169, 211, 375, 930, 1083, 1243
Hpy188III	TCNNGA	6 cut(s)	147, 185, 311, 896, 1026, 1043
Hpy8I	GTNNAC	1 cut(s)	1092
HpyAV	CCTTC	3 cut(s)	110, 144, 611
HpyCH4IV	ACGT	4 cut(s)	189, 334, 588, 1146
HpyCH4V	TGCA	8 cut(s)	821, 872, 915, 968, 1092, 1163, 1293, 1305
HpyF10VI	GCNNNNNNNGC	5 cut(s)	700, 878, 1001, 1160, 1169
HpyF3I	CTNAG	2 cut(s)	300, 309
HpySE526I	ACGT	4 cut(s)	189, 334, 588, 1146
Hsp92II	CATG	2 cut(s)	328, 451
HspAI	GCGC	2 cut(s)	260, 720
Ksp22I	TGATCA	3 cut(s)	457, 1039, 1128
Kzo9I	GATC	5 cut(s)	206, 457, 1039, 1064, 1128
LguI	GCTCTTC	1 cut(s)	1083
LmnI	GCTCC	8 cut(s)	60, 101, 170, 320, 356, 376, 670, 855
Lsp1109I	GCAGC	3 cut(s)	805, 856, 1166
LweI	GCATC	2 cut(s)	185, 504
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	4 cut(s)	189, 334, 588, 1146
MaeIII	GTNAC	5 cut(s)	140, 229, 251, 524, 533
MalI	GATC	5 cut(s)	208, 459, 1041, 1066, 1130
MboI	GATC	5 cut(s)	206, 457, 1039, 1064, 1128
MflI	RGATCY	1 cut(s)	1064
MhlI	GDGCHC	4 cut(s)	98, 667, 955, 1094
MlsI	TGGCCA	1 cut(s)	73
MluCI	AATT	5 cut(s)	822, 891, 903, 1192, 1215
MluNI	TGGCCA	1 cut(s)	73
MlyI	GAGTC	2 cut(s)	17, 385
Mox20I	TGGCCA	1 cut(s)	73
MroXI	GAANNNNTTC	2 cut(s)	85, 924
MscI	TGGCCA	1 cut(s)	73
MseI	TTAA	4 cut(s)	390, 875, 1109, 1247
Msp20I	TGGCCA	1 cut(s)	73
MspA1I	CMGCKG	1 cut(s)	1157
MspI	CCGG	2 cut(s)	14, 504
MspR9I	CCNGG	2 cut(s)	339, 530
Mva1269I	GAATGC	1 cut(s)	49
MvaI	CCWGG	2 cut(s)	339, 530
MvnI	CGCG	1 cut(s)	720
MwoI	GCNNNNNNNGC	5 cut(s)	700, 878, 1001, 1160, 1169
NcoI	CCATGG	1 cut(s)	324
NdeII	GATC	5 cut(s)	206, 457, 1039, 1064, 1128
NlaIII	CATG	2 cut(s)	328, 451
NlaIV	GGNNCC	6 cut(s)	97, 166, 322, 372, 408, 741
NmuCI	GTSAC	1 cut(s)	229
PciSI	GCTCTTC	1 cut(s)	1083
PctI	GAATGC	1 cut(s)	49
PdmI	GAANNNNTTC	2 cut(s)	85, 924
PfeI	GAWTC	2 cut(s)	212, 1166
PkrI	GCNGC	5 cut(s)	35, 156, 820, 871, 1156
PleI	GAGTC	2 cut(s)	16, 384
PpsI	GAGTC	2 cut(s)	16, 384
Psp1406I	AACGTT	1 cut(s)	1146
Psp6I	CCWGG	2 cut(s)	337, 528
PspEI	GGTNACC	1 cut(s)	524
PspGI	CCWGG	2 cut(s)	337, 528
PspN4I	GGNNCC	6 cut(s)	97, 166, 322, 372, 408, 741
PspPI	GGNCC	2 cut(s)	739, 1028
PstNI	CAGNNNCTG	1 cut(s)	1037
PsuI	RGATCY	1 cut(s)	1064
PvuII	CAGCTG	1 cut(s)	1157
RsaI	GTAC	2 cut(s)	298, 1284
RsaNI	GTAC	2 cut(s)	297, 1283
SapI	GCTCTTC	1 cut(s)	1083
SaqAI	TTAA	4 cut(s)	390, 875, 1109, 1247
SatI	GCNGC	5 cut(s)	34, 155, 819, 870, 1155
Sau3AI	GATC	5 cut(s)	206, 457, 1039, 1064, 1128
Sau96I	GGNCC	2 cut(s)	739, 1028
ScaI	AGTACT	1 cut(s)	298
SchI	GAGTC	2 cut(s)	17, 385
ScrFI	CCNGG	2 cut(s)	339, 530
SduI	GDGCHC	4 cut(s)	98, 667, 955, 1094
SfaNI	GCATC	2 cut(s)	185, 504
SinI	GGWCC	2 cut(s)	739, 1028
SmlI	CTYRAG	2 cut(s)	538, 896
SmoI	CTYRAG	2 cut(s)	538, 896
Sse9I	AATT	5 cut(s)	822, 891, 903, 1192, 1215
SsiI	CCGC	3 cut(s)	33, 154, 561
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	337, 528
StyI	CCWWGG	3 cut(s)	324, 343, 411
TaiI	ACGT	4 cut(s)	192, 337, 591, 1149
TasI	AATT	5 cut(s)	822, 891, 903, 1192, 1215
TatI	WGTACW	2 cut(s)	296, 1282
TauI	GCSGC	2 cut(s)	36, 157
TfiI	GAWTC	2 cut(s)	212, 1166
Tru1I	TTAA	4 cut(s)	390, 875, 1109, 1247
Tru9I	TTAA	4 cut(s)	390, 875, 1109, 1247
TscAI	CASTG	2 cut(s)	115, 756
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	3 cut(s)	818, 869, 1154
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	5 cut(s)	207, 489, 653, 699, 837
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	2 cut(s)	115, 756
VneI	GTGCAC	1 cut(s)	1090
VpaK11BI	GGWCC	2 cut(s)	739, 1028
XapI	RAATTY	2 cut(s)	891, 1192
XbaI	TCTAGA	1 cut(s)	146
XmnI	GAANNNNTTC	2 cut(s)	85, 924
XspI	CTAG	1 cut(s)	147
ZrmI	AGTACT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.