Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014560

Physical Location & Seq

Genomic Coordinates Forward (+)

17902204 .. 17902818

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0191800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTCGTCGTCTTCTTCTTCAATCTTCATGAGCCTGGAAGACCTTGATGTAGGGGTTGTGAAAACATTCCACCCCACTGATTCTGATTTAAGAATTTATGAGCCTTCCAAATTTCAACATCAAGATTATATCTATTTCTTCTCCCCGGTCAAGAAGTTGGGTTCCCGCTGTTTTCGCAAAATTGGCTACGATGGGGGCACCTGGAGCGAGACTGAATCTGCTAAACCTGTCTATGTCAGTGGAATTGAAGAGCCTTATGGGAAACTAAGGAAATTTAGATACGAAAACAACAAAGTCAAAGGCTGTGAACACCATGCTGCTTGGTTGATGGATGAATTCACCATCAACCAAGCACCCGATTTGGCTTTGTGCCGGCTCAAACTCAATGACAAGGGAGGAGGAAGAAAAAAGAGGAAGAAGAGTTCTGATGAGACTAATGAGGATGAGAATCACAAAAAGACAATGTCTTTAAAAAACCGAAAACTTGAACCGAAAAGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010305 GO:0014070 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043401 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_11 TPR_16 TPR_17 TPR_2 TPR_7 TPR_8 Thioredoxin

Protein Analysis

167

Amino Acids

19.29

Weight (kDa)

9.23

Isoelectric Point (pI)

48.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	34 - 114	7.2e-08	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10090 AT5G65160
fragaria_vesca	FvH4_1g21140
malus_domestica	MD01G1027500.v1.1 MD15G1326400.v1.1
prunus_persica	Prupe.6G182700_v2.0.a1 Prupe.6G182700_v2.0.a1
pyrus_communis	pycom15g28750
rosa_chinensis	RchiOBHm_Chr2g0114921
rosa_laevigata	RLG00000018135
rosa_roxburghii	Rroxscaffold_2G00130450
rosa_rugosa	Rorug02G0191800
rosa_samantha	Rh2AG250600 Rh2BG260000 Rh2CG254800 Rh2DG258700
rosa_wichuraiana	Rw2G019530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	197
AciI	CCGC	1 cut(s)	166
AcsI	RAATTY	4 cut(s)	93, 110, 272, 335
AgsI	TTSAA	4 cut(s)	21, 116, 248, 488
AjnI	CCWGG	2 cut(s)	33, 200
AloI	GAACNNNNNNTCC	2 cut(s)	406, 438
Alw26I	GTCTC	2 cut(s)	203, 425
ApeKI	GCWGC	1 cut(s)	317
ApoI	RAATTY	4 cut(s)	93, 110, 272, 335
Asp700I	GAANNNNTTC	1 cut(s)	65
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	331
BaeGI	GKGCMC	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	197
BbsI	GAAGAC	2 cut(s)	3, 45
BbvI	GCAGC	1 cut(s)	304
BccI	CCATC	3 cut(s)	185, 322, 350
BciT130I	CCWGG	2 cut(s)	35, 202
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	2 cut(s)	203, 425
BisI	GCNGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	319
Bme1390I	CCNGG	3 cut(s)	35, 146, 202
BmiI	GGNNCC	2 cut(s)	163, 199
BmrFI	CCNGG	3 cut(s)	35, 146, 202
BpiI	GAAGAC	2 cut(s)	3, 45
BpmI	CTGGAG	1 cut(s)	223
BpuMI	CCSGG	1 cut(s)	146
BsaBI	GATNNNNATC	1 cut(s)	447
BsaJI	CCNNGG	1 cut(s)	144
Bse118I	RCCGGY	1 cut(s)	372
Bse8I	GATNNNNATC	1 cut(s)	447
BseBI	CCWGG	2 cut(s)	35, 202
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	2 cut(s)	337, 448
BseJI	GATNNNNATC	1 cut(s)	447
BseRI	GAGGAG	1 cut(s)	411
BseSI	GKGCMC	1 cut(s)	200
BseXI	GCAGC	1 cut(s)	304
BshNI	GGYRCC	1 cut(s)	197
BsiSI	CCGG	2 cut(s)	146, 373
BsmAI	GTCTC	2 cut(s)	203, 425
Bsp1286I	GDGCHC	1 cut(s)	200
BspACI	CCGC	1 cut(s)	166
BspHI	TCATGA	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	163, 199
BspQI	GCTCTTC	1 cut(s)	243
BspT107I	GGYRCC	1 cut(s)	197
BsrFI	RCCGGY	1 cut(s)	372
BssAI	RCCGGY	1 cut(s)	372
BssECI	CCNNGG	1 cut(s)	144
Bst2UI	CCWGG	2 cut(s)	35, 202
Bst6I	CTCTTC	2 cut(s)	243, 413
BstC8I	GCNNGC	1 cut(s)	374
BstDEI	CTNAG	1 cut(s)	266
BstF5I	GGATG	2 cut(s)	337, 448
BstMAI	GTCTC	2 cut(s)	203, 425
BstMWI	GCNNNNNNNGC	3 cut(s)	174, 183, 204
BstNI	CCWGG	2 cut(s)	35, 202
BstSCI	CCNGG	3 cut(s)	33, 144, 200
BstSLI	GKGCMC	1 cut(s)	200
BstV1I	GCAGC	1 cut(s)	304
BstV2I	GAAGAC	2 cut(s)	3, 45
BtsCI	GGATG	2 cut(s)	337, 448
BtsIMutI	CAGTG	2 cut(s)	75, 244
Cac8I	GCNNGC	1 cut(s)	374
CciI	TCATGA	1 cut(s)	27
Cfr10I	RCCGGY	1 cut(s)	372
CviAII	CATG	2 cut(s)	28, 314
CviJI	RGCY	7 cut(s)	33, 103, 186, 253, 303, 365, 376
CviKI_1	RGCY	7 cut(s)	33, 103, 186, 253, 303, 365, 376
DdeI	CTNAG	1 cut(s)	266
DraI	TTTAAA	1 cut(s)	471
Eam1104I	CTCTTC	2 cut(s)	243, 413
EarI	CTCTTC	2 cut(s)	243, 413
EcoRI	GAATTC	1 cut(s)	335
EcoRII	CCWGG	2 cut(s)	33, 200
FaeI	CATG	2 cut(s)	31, 317
FaiI	YATR	6 cut(s)	29, 99, 129, 234, 258, 315
FatI	CATG	2 cut(s)	27, 313
FauI	CCCGC	1 cut(s)	173
Fnu4HI	GCNGC	1 cut(s)	318
FokI	GGATG	2 cut(s)	344, 455
Fsp4HI	GCNGC	1 cut(s)	318
GluI	GCNGC	1 cut(s)	318
GsuI	CTGGAG	1 cut(s)	223
HapII	CCGG	2 cut(s)	146, 373
Hin1II	CATG	2 cut(s)	31, 317
HinfI	GANTC	3 cut(s)	80, 215, 448
HpaII	CCGG	2 cut(s)	146, 373
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188I	TCNGA	2 cut(s)	85, 427
Hpy188III	TCNNGA	3 cut(s)	28, 122, 151
Hpy8I	GTNNAC	1 cut(s)	308
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	3 cut(s)	174, 183, 204
HpyF3I	CTNAG	1 cut(s)	266
Hsp92II	CATG	2 cut(s)	31, 317
KroI	GCCGGC	1 cut(s)	372
KroNI	GCCGGC	1 cut(s)	374
LguI	GCTCTTC	1 cut(s)	243
LmnI	GCTCC	1 cut(s)	204
LpnPI	CCDG	7 cut(s)	20, 47, 159, 187, 214, 240, 386
Lsp1109I	GCAGC	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	200
MluCI	AATT	6 cut(s)	93, 110, 180, 243, 272, 335
MnlI	CCTC	4 cut(s)	389, 392, 405, 433
MroNI	GCCGGC	1 cut(s)	372
MroXI	GAANNNNTTC	1 cut(s)	65
MseI	TTAA	3 cut(s)	89, 470, 502
MspA1I	CMGCKG	1 cut(s)	168
MspI	CCGG	2 cut(s)	146, 373
MspR9I	CCNGG	3 cut(s)	35, 146, 202
MvaI	CCWGG	2 cut(s)	35, 202
MwoI	GCNNNNNNNGC	3 cut(s)	174, 183, 204
NaeI	GCCGGC	1 cut(s)	374
NciI	CCSGG	1 cut(s)	146
NgoMIV	GCCGGC	1 cut(s)	372
NlaIII	CATG	2 cut(s)	31, 317
NlaIV	GGNNCC	2 cut(s)	163, 199
PagI	TCATGA	1 cut(s)	27
PciSI	GCTCTTC	1 cut(s)	243
PdiI	GCCGGC	1 cut(s)	374
PdmI	GAANNNNTTC	1 cut(s)	65
PfeI	GAWTC	3 cut(s)	80, 215, 448
PflFI	GACNNNGTC	1 cut(s)	463
PkrI	GCNGC	1 cut(s)	319
Psp6I	CCWGG	2 cut(s)	33, 200
PspGI	CCWGG	2 cut(s)	33, 200
PspN4I	GGNNCC	2 cut(s)	163, 199
PsyI	GACNNNGTC	1 cut(s)	463
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	3 cut(s)	89, 470, 502
SatI	GCNGC	1 cut(s)	318
ScrFI	CCNGG	3 cut(s)	35, 146, 202
SduI	GDGCHC	1 cut(s)	200
SetI	ASST	3 cut(s)	45, 203, 229
Sse9I	AATT	6 cut(s)	93, 110, 180, 243, 272, 335
SsiI	CCGC	1 cut(s)	166
StyD4I	CCNGG	3 cut(s)	33, 144, 200
TasI	AATT	6 cut(s)	93, 110, 180, 243, 272, 335
TfiI	GAWTC	3 cut(s)	80, 215, 448
Tru1I	TTAA	3 cut(s)	89, 470, 502
Tru9I	TTAA	3 cut(s)	89, 470, 502
TscAI	CASTG	2 cut(s)	82, 244
TseI	GCWGC	1 cut(s)	317
TspDTI	ATGAA	2 cut(s)	16, 348
TspRI	CASTG	2 cut(s)	82, 244
Tth111I	GACNNNGTC	1 cut(s)	463
XapI	RAATTY	4 cut(s)	93, 110, 272, 335
XmnI	GAANNNNTTC	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.