Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0014560

Physical Location & Seq

Genomic Coordinates Forward (+)

28349675 .. 28351951

Gene Structure 2277 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG250600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1806 bp

ATGGGAGAGTCGCCGGAGAAGAAATCAGGTTGCGGCATTTTGAATGCTGTGTTTGGACGGAGCAGTTTTTGGCCAAGAAGAACAACTTCCACGGGCTCCCTTCCCGTCAGTGGCAATCAGTTTGTGAAAACACCAAGTGGTAACTCTAGAAGGCGGCGTGGTGGCTCCGATGAGGCATCATTTCTTGACATGTCATCGGCTAATGGATCAGAATCTTCATCAAAACCCGTCACAAAACCATCTCAATATAGTAACAGAGCGCCCCCTATACAGCCACATCAAAATCAGGGTAGAAGTACTAAGCCACCTCAGGAAGCTGGAGCCATGGTTTCACGTCCAGGCCAAGGCCAACAAGGAGCAATGAGAATGGCTCCGAGTCAAGGTTATGTTAATCAAGGCAAAAGGGTTCCCAAGGAAGCAGTTGGGTTGTCTGGTGAGCTTGATAGCATGATTGCTGATCACCAGAAATCAAAAGGGAGTAGCACATTCGTTAGAGCTTCATCCGGCAATGTGATGCTTTTTGGTAACCTGGGTAACTTGAGAACAGGAGGTGGTGGTGGAAATGCGAACTCAAATAACGTGCTGGATTACCTTCCAAAGACAGCAAGAGAAGAAACCCCAATGATGATGAATGGAAATGTAGGGAAGAGTAGTGCTCCTAAAGAAGAGAAAAAACCAAGTTCGCAAAATCAGCCTACTTCATTTTGTCGCGCATTATCAACAAGGATGGACCCCGAGACACTGAAGATTATGGGCAATGAGGATTACAAGAATGGAAGATTTGAAGAGGCTTTGTCTTTGTATGACGCTGCAATTTCTATTGACCCCGATAAGGCTTCATATAGGAGCAACAAGAGTGCTGCATTAACTGCTCTTGGTCAAATTCTTGAGGCAATTTTTGAGTGCAGAGAAGCCATTCGGATTGAACCTCATTATCATAGGGCTCACCATCGTCTTGCAACCTTATACGTTAGATTAGGGGAAGCTGAAAAAGCTACATATCACTATAAACATTCTGGACCAGAGGCTGATCAAGAGGACTTGGCTAAAGTGAGATCTCTTCAGGCTCTTCTGAACAAGTGCACAGAGGCTCGTAGGTTAAGAGATTGGAACACCTTGATCAAGGAAACACAAAACGTTATAGCAGCTGGTGCAGATTCAGCACCACAGATATTTTCTTTGCAAGCCGAGGCCTTGCTGAAGGTCCATAGGCACCAAGAAGCAGATGAGGCTTTATCCAGGGGTCCAAACTTTGGGGTGGATGCTTGCACTAAATACTTCGGTCCTATTAGTAACGCGAGTATGTTAGTAACAAGGGCTCAGGTTGACATGTGTGCTGGAAGAATCGACGATGCATTGGAGGCAGCTCAACGAGCATCCCGTCTTGACTCAAACAACAAGGAAGCAAACATGGTCATGAGGAAGGCTAGAGCTGTTGCAGGAGCGCGATCAAAGGGTAATGAGCTATTCAAGACATTAAGATTCTCAGAGGCTTGTGTTGCATATGGGGAGGGACTTGAGCAGGACCCTTATAACTCAGTGTTGTTATGCAACCGCGCTGCTTGTCGGTCCAAACTTGGCCAGTTTGACCAAGCAATTGAGGACTGTACAGCTGCACTTAATGTGCGTCCATCTTACAGCAAGGCCAGACTAAGAAGAGCAGATTGCAATGCCAAGTTGGGAAAATGGGATGCTTCATTACAGGACTATGAGATTTTGATCAAGCAAACACCAGATGATGAGGAGATAAAACGTGCTTTGTCTGAGGTGCGGACACAGCTCAAGAAACAGCGAAGTGAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010305 GO:0014070 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043401 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_11 TPR_16 TPR_17 TPR_2 TPR_7 TPR_8 Thioredoxin

Protein Analysis

601

Amino Acids

65.68

Weight (kDa)

9.29

Isoelectric Point (pI)

49.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_11	PF13414	252 - 284	3.9e-06	TPR repeat
TPR_1	PF00515	515 - 546	1e-06	Tetratricopeptide repeat
TPR_16	PF13432	525 - 580	7.8e-06	Tetratricopeptide repeat
TPR_19	PF14559	527 - 588	4.3e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10090 AT5G65160
fragaria_vesca	FvH4_1g21140
malus_domestica	MD01G1027500.v1.1 MD15G1326400.v1.1
prunus_persica	Prupe.6G182700_v2.0.a1 Prupe.6G182700_v2.0.a1
pyrus_communis	pycom15g28750
rosa_chinensis	RchiOBHm_Chr2g0114921
rosa_laevigata	RLG00000018135
rosa_roxburghii	Rroxscaffold_2G00130450
rosa_rugosa	Rorug02G0191800
rosa_samantha	Rh2AG250600 Rh2BG260000 Rh2CG254800 Rh2DG258700
rosa_wichuraiana	Rw2G019530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1533
AccB1I	GGYRCC	1 cut(s)	1212
AccB7I	CCANNNNNTGG	1 cut(s)	1253
AccII	CGCG	4 cut(s)	711, 1298, 1447, 1557
AciI	CCGC	4 cut(s)	33, 154, 1555, 1771
AclI	AACGTT	1 cut(s)	1137
AclWI	GGATC	1 cut(s)	214
AcoI	YGGCCR	2 cut(s)	71, 1579
AcsI	RAATTY	1 cut(s)	882
AcuI	CTGAAG	3 cut(s)	764, 1046, 1220
AdeI	CACNNNGTG	1 cut(s)	137
AfaI	GTAC	2 cut(s)	298, 1609
AfiI	CCNNNNNNNGG	5 cut(s)	110, 344, 380, 832, 1253
AflIII	ACRYGT	2 cut(s)	189, 1329
AgsI	TTSAA	4 cut(s)	43, 785, 926, 1471
AjiI	CACGTC	1 cut(s)	335
AjnI	CCWGG	3 cut(s)	337, 528, 1238
Alw21I	GWGCWC	2 cut(s)	658, 1085
Alw26I	GTCTC	1 cut(s)	731
Alw44I	GTGCAC	1 cut(s)	1081
AlwI	GGATC	1 cut(s)	214
AlwNI	CAGNNNCTG	1 cut(s)	1028
Ama87I	CYCGRG	1 cut(s)	734
AoxI	GGCC	6 cut(s)	71, 340, 346, 1191, 1579, 1644
ApaLI	GTGCAC	1 cut(s)	1081
ApeKI	GCWGC	6 cut(s)	809, 860, 1145, 1364, 1559, 1613
ApoI	RAATTY	1 cut(s)	882
Asp700I	GAANNNNTTC	2 cut(s)	85, 915
AspLEI	GCGC	4 cut(s)	262, 713, 1447, 1559
AspS9I	GGNCC	7 cut(s)	730, 1019, 1204, 1244, 1283, 1525, 1569
AsuHPI	GGTGA	3 cut(s)	446, 452, 938
AvaI	CYCGRG	1 cut(s)	734
AvaII	GGWCC	7 cut(s)	730, 1019, 1204, 1244, 1283, 1525, 1569
AxyI	CCTNAGG	1 cut(s)	309
BaeGI	GKGCMC	1 cut(s)	1085
BalI	TGGCCA	2 cut(s)	73, 1581
BanI	GGYRCC	1 cut(s)	1212
BanII	GRGCYC	3 cut(s)	98, 946, 1321
Bbv12I	GWGCWC	2 cut(s)	658, 1085
BbvI	GCAGC	6 cut(s)	796, 847, 1157, 1376, 1546, 1600
BccI	CCATC	4 cut(s)	247, 721, 957, 1639
BciT130I	CCWGG	3 cut(s)	339, 530, 1240
BclI	TGATCA	4 cut(s)	457, 1030, 1119, 1719
BcoDI	GTCTC	1 cut(s)	731
BfaI	CTAG	2 cut(s)	147, 1428
BfoI	RGCGCY	1 cut(s)	263
BglII	AGATCT	1 cut(s)	1055
BisI	GCNGC	8 cut(s)	34, 155, 810, 861, 1146, 1365, 1560, 1614
BlsI	GCNGC	8 cut(s)	35, 156, 811, 862, 1147, 1366, 1561, 1615
BmcAI	AGTACT	1 cut(s)	298
Bme1390I	CCNGG	3 cut(s)	339, 530, 1240
Bme18I	GGWCC	7 cut(s)	730, 1019, 1204, 1244, 1283, 1525, 1569
BmeT110I	CYCGRG	1 cut(s)	734
BmgBI	CACGTC	1 cut(s)	335
BmgT120I	GGNCC	7 cut(s)	730, 1019, 1204, 1244, 1283, 1525, 1569
BmiI	GGNNCC	9 cut(s)	97, 166, 322, 372, 408, 732, 1214, 1245, 1527
BmrFI	CCNGG	3 cut(s)	339, 530, 1240
BmsI	GCATC	6 cut(s)	185, 504, 1252, 1342, 1385, 1681
BplI	GAGNNNNNCTC	4 cut(s)	355, 387, 640, 672
BpmI	CTGGAG	1 cut(s)	339
Bpu10I	CCTNAGC	1 cut(s)	1320
BpuEI	CTTGAG	4 cut(s)	559, 908, 1538, 1766
BsaBI	GATNNNNATC	2 cut(s)	211, 1718
BsaJI	CCNNGG	7 cut(s)	90, 324, 343, 411, 529, 1188, 1239
BsaXI	ACNNNNNCTCC	2 cut(s)	312, 342
Bsc4I	CCNNNNNNNGG	5 cut(s)	110, 344, 380, 832, 1253
Bse1I	ACTGG	1 cut(s)	1582
Bse21I	CCTNAGG	1 cut(s)	309
Bse3DI	GCAATG	4 cut(s)	366, 514, 763, 1675
Bse8I	GATNNNNATC	2 cut(s)	211, 1718
BseBI	CCWGG	3 cut(s)	339, 530, 1240
BseDI	CCNNGG	7 cut(s)	90, 324, 343, 411, 529, 1188, 1239
BseGI	GGATG	5 cut(s)	500, 732, 1267, 1376, 1696
BseJI	GATNNNNATC	2 cut(s)	211, 1718
BseLI	CCNNNNNNNGG	5 cut(s)	110, 344, 380, 832, 1253
BseMI	GCAATG	4 cut(s)	366, 514, 763, 1675
BseMII	CTCAG	5 cut(s)	323, 1334, 1500, 1551, 1755
BseNI	ACTGG	1 cut(s)	1582
BseRI	GAGGAG	1 cut(s)	1757
BseSI	GKGCMC	1 cut(s)	1085
BseXI	GCAGC	6 cut(s)	796, 847, 1157, 1376, 1546, 1600
BsgI	GTGCAG	3 cut(s)	925, 1173, 1599
Bsh1236I	CGCG	4 cut(s)	711, 1298, 1447, 1557
BshFI	GGCC	6 cut(s)	73, 342, 348, 1193, 1581, 1646
BshNI	GGYRCC	1 cut(s)	1212
BsiHKAI	GWGCWC	2 cut(s)	658, 1085
BsiHKCI	CYCGRG	1 cut(s)	734
BsiSI	CCGG	2 cut(s)	14, 504
BslFI	GGGAC	1 cut(s)	1527
BslI	CCNNNNNNNGG	5 cut(s)	110, 344, 380, 832, 1253
BsmAI	GTCTC	1 cut(s)	731
BsmFI	GGGAC	1 cut(s)	1527
BsmI	GAATGC	1 cut(s)	49
BsnI	GGCC	6 cut(s)	73, 342, 348, 1193, 1581, 1646
BsoBI	CYCGRG	1 cut(s)	734
Bsp1286I	GDGCHC	5 cut(s)	98, 658, 946, 1085, 1321
Bsp1407I	TGTACA	1 cut(s)	1607
Bsp143I	GATC	7 cut(s)	206, 457, 1030, 1055, 1119, 1448, 1719
Bsp19I	CCATGG	1 cut(s)	324
BspACI	CCGC	4 cut(s)	33, 154, 1555, 1771
BspANI	GGCC	6 cut(s)	73, 342, 348, 1193, 1581, 1646
BspCNI	CTCAG	5 cut(s)	322, 1333, 1499, 1550, 1756
BspFNI	CGCG	4 cut(s)	711, 1298, 1447, 1557
BspHI	TCATGA	1 cut(s)	1416
BspLI	GGNNCC	9 cut(s)	97, 166, 322, 372, 408, 732, 1214, 1245, 1527
BspPI	GGATC	1 cut(s)	214
BspQI	GCTCTTC	2 cut(s)	1074, 1651
BspT107I	GGYRCC	1 cut(s)	1212
BsrDI	GCAATG	4 cut(s)	366, 514, 763, 1675
BsrGI	TGTACA	1 cut(s)	1607
BsrI	ACTGG	1 cut(s)	1582
BssECI	CCNNGG	7 cut(s)	90, 324, 343, 411, 529, 1188, 1239
BssMI	GATC	7 cut(s)	206, 457, 1030, 1055, 1119, 1448, 1719
BssT1I	CCWWGG	3 cut(s)	324, 343, 411
Bst2UI	CCWGG	3 cut(s)	339, 530, 1240
Bst4CI	ACNGT	1 cut(s)	1607
Bst6I	CTCTTC	6 cut(s)	641, 660, 780, 1065, 1074, 1651
BstAPI	GCANNNNNTGC	2 cut(s)	869, 1151
BstAUI	TGTACA	1 cut(s)	1607
BstC8I	GCNNGC	2 cut(s)	1185, 1267
BstDEI	CTNAG	7 cut(s)	300, 309, 1320, 1486, 1537, 1652, 1764
BstDSI	CCRYGG	2 cut(s)	90, 324
BstEII	GGTNACC	1 cut(s)	524
BstF5I	GGATG	5 cut(s)	500, 732, 1267, 1376, 1696
BstFNI	CGCG	4 cut(s)	711, 1298, 1447, 1557
BstH2I	RGCGCY	1 cut(s)	263
BstHHI	GCGC	4 cut(s)	262, 713, 1447, 1559
BstKTI	GATC	7 cut(s)	209, 460, 1033, 1058, 1122, 1451, 1722
BstMAI	GTCTC	1 cut(s)	731
BstMBI	GATC	7 cut(s)	206, 457, 1030, 1055, 1119, 1448, 1719
BstNI	CCWGG	3 cut(s)	339, 530, 1240
BstNSI	RCATGY	2 cut(s)	193, 1333
BstPI	GGTNACC	1 cut(s)	524
BstSCI	CCNGG	3 cut(s)	337, 528, 1238
BstSLI	GKGCMC	1 cut(s)	1085
BstUI	CGCG	4 cut(s)	711, 1298, 1447, 1557
BstV1I	GCAGC	6 cut(s)	796, 847, 1157, 1376, 1546, 1600
BstX2I	RGATCY	1 cut(s)	1055
BstYI	RGATCY	1 cut(s)	1055
Bsu36I	CCTNAGG	1 cut(s)	309
BsuRI	GGCC	6 cut(s)	73, 342, 348, 1193, 1581, 1646
BtgI	CCRYGG	2 cut(s)	90, 324
BtrI	CACGTC	1 cut(s)	335
BtsCI	GGATG	5 cut(s)	500, 732, 1267, 1376, 1696
BtsIMutI	CAGTG	3 cut(s)	115, 740, 1545
Cac8I	GCNNGC	2 cut(s)	1185, 1267
CaiI	CAGNNNCTG	1 cut(s)	1028
CciI	TCATGA	1 cut(s)	1416
CfoI	GCGC	4 cut(s)	262, 713, 1447, 1559
Cfr13I	GGNCC	7 cut(s)	730, 1019, 1204, 1244, 1283, 1525, 1569
CseI	GACGC	2 cut(s)	815, 1616
Csp6I	GTAC	2 cut(s)	297, 1608
CviAII	CATG	6 cut(s)	190, 325, 448, 1330, 1411, 1417
CviQI	GTAC	2 cut(s)	297, 1608
DdeI	CTNAG	7 cut(s)	300, 309, 1320, 1486, 1537, 1652, 1764
DpnI	GATC	7 cut(s)	208, 459, 1032, 1057, 1121, 1450, 1721
DpnII	GATC	7 cut(s)	206, 457, 1030, 1055, 1119, 1448, 1719
DraIII	CACNNNGTG	1 cut(s)	137
EaeI	YGGCCR	2 cut(s)	71, 1579
Eam1104I	CTCTTC	6 cut(s)	641, 660, 780, 1065, 1074, 1651
EarI	CTCTTC	6 cut(s)	641, 660, 780, 1065, 1074, 1651
Eco130I	CCWWGG	3 cut(s)	324, 343, 411
Eco147I	AGGCCT	1 cut(s)	1193
Eco24I	GRGCYC	3 cut(s)	98, 946, 1321
Eco47I	GGWCC	7 cut(s)	730, 1019, 1204, 1244, 1283, 1525, 1569
Eco57I	CTGAAG	3 cut(s)	764, 1046, 1220
Eco81I	CCTNAGG	1 cut(s)	309
Eco88I	CYCGRG	1 cut(s)	734
Eco91I	GGTNACC	1 cut(s)	524
EcoO109I	RGGNCCY	1 cut(s)	1525
EcoO65I	GGTNACC	1 cut(s)	524
EcoRII	CCWGG	3 cut(s)	337, 528, 1238
EcoT14I	CCWWGG	3 cut(s)	324, 343, 411
EcoT22I	ATGCAT	1 cut(s)	1357
EcoT38I	GRGCYC	3 cut(s)	98, 946, 1321
ErhI	CCWWGG	3 cut(s)	324, 343, 411
FaeI	CATG	6 cut(s)	193, 328, 451, 1333, 1414, 1420
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FaqI	GGGAC	1 cut(s)	1527
FatI	CATG	6 cut(s)	189, 324, 447, 1329, 1410, 1416
FauNDI	CATATG	1 cut(s)	1504
FbaI	TGATCA	4 cut(s)	457, 1030, 1119, 1719
Fnu4HI	GCNGC	8 cut(s)	34, 155, 810, 861, 1146, 1365, 1560, 1614
FokI	GGATG	5 cut(s)	487, 739, 1274, 1363, 1703
FriOI	GRGCYC	3 cut(s)	98, 946, 1321
Fsp4HI	GCNGC	8 cut(s)	34, 155, 810, 861, 1146, 1365, 1560, 1614
FspBI	CTAG	2 cut(s)	147, 1428
GlaI	GCGC	4 cut(s)	261, 712, 1446, 1558
GluI	GCNGC	8 cut(s)	34, 155, 810, 861, 1146, 1365, 1560, 1614
GsuI	CTGGAG	1 cut(s)	339
HaeII	RGCGCY	1 cut(s)	263
HaeIII	GGCC	6 cut(s)	73, 342, 348, 1193, 1581, 1646
HapII	CCGG	2 cut(s)	14, 504
HgaI	GACGC	2 cut(s)	815, 1616
HhaI	GCGC	4 cut(s)	262, 713, 1447, 1559
Hin1II	CATG	6 cut(s)	193, 328, 451, 1333, 1414, 1420
Hin6I	GCGC	4 cut(s)	260, 711, 1445, 1557
HinP1I	GCGC	4 cut(s)	260, 711, 1445, 1557
HincII	GTYRAC	1 cut(s)	1327
HindII	GTYRAC	1 cut(s)	1327
HinfI	GANTC	7 cut(s)	8, 212, 376, 1157, 1344, 1388, 1482
HpaII	CCGG	2 cut(s)	14, 504
HphI	GGTGA	3 cut(s)	446, 452, 938
Hpy166II	GTNNAC	2 cut(s)	1083, 1327
Hpy188I	TCNGA	7 cut(s)	169, 211, 375, 921, 1074, 1489, 1765
Hpy8I	GTNNAC	2 cut(s)	1083, 1327
Hpy99I	CGWCG	1 cut(s)	1352
HpyAV	CCTTC	5 cut(s)	110, 144, 602, 1195, 1417
HpyCH4III	ACNGT	1 cut(s)	1607
HpyCH4IV	ACGT	5 cut(s)	334, 579, 969, 1137, 1753
HpyF3I	CTNAG	7 cut(s)	300, 309, 1320, 1486, 1537, 1652, 1764
HpySE526I	ACGT	5 cut(s)	334, 579, 969, 1137, 1753
Hsp92II	CATG	6 cut(s)	193, 328, 451, 1333, 1414, 1420
HspAI	GCGC	4 cut(s)	260, 711, 1445, 1557
Ksp22I	TGATCA	4 cut(s)	457, 1030, 1119, 1719
Kzo9I	GATC	7 cut(s)	206, 457, 1030, 1055, 1119, 1448, 1719
LguI	GCTCTTC	2 cut(s)	1074, 1651
LmnI	GCTCC	9 cut(s)	60, 101, 170, 320, 356, 376, 661, 846, 1442
Lsp1109I	GCAGC	6 cut(s)	796, 847, 1157, 1376, 1546, 1600
LweI	GCATC	6 cut(s)	185, 504, 1252, 1342, 1385, 1681
MaeI	CTAG	2 cut(s)	147, 1428
MaeII	ACGT	5 cut(s)	334, 579, 969, 1137, 1753
MaeIII	GTNAC	7 cut(s)	140, 229, 251, 524, 533, 1292, 1309
MalI	GATC	7 cut(s)	208, 459, 1032, 1057, 1121, 1450, 1721
MboI	GATC	7 cut(s)	206, 457, 1030, 1055, 1119, 1448, 1719
MfeI	CAATTG	1 cut(s)	1596
MflI	RGATCY	1 cut(s)	1055
MhlI	GDGCHC	5 cut(s)	98, 658, 946, 1085, 1321
MlsI	TGGCCA	2 cut(s)	73, 1581
MluCI	AATT	4 cut(s)	813, 882, 894, 1596
MluNI	TGGCCA	2 cut(s)	73, 1581
MlyI	GAGTC	3 cut(s)	17, 385, 1382
Mox20I	TGGCCA	2 cut(s)	73, 1581
Mph1103I	ATGCAT	1 cut(s)	1357
MroXI	GAANNNNTTC	2 cut(s)	85, 915
MscI	TGGCCA	2 cut(s)	73, 1581
MseI	TTAA	5 cut(s)	390, 866, 1100, 1478, 1620
MslI	CAYNNNNRTG	1 cut(s)	1415
Msp20I	TGGCCA	2 cut(s)	73, 1581
MspA1I	CMGCKG	2 cut(s)	1148, 1613
MspI	CCGG	2 cut(s)	14, 504
MspR9I	CCNGG	3 cut(s)	339, 530, 1240
MunI	CAATTG	1 cut(s)	1596
Mva1269I	GAATGC	1 cut(s)	49
MvaI	CCWGG	3 cut(s)	339, 530, 1240
MvnI	CGCG	4 cut(s)	711, 1298, 1447, 1557
NcoI	CCATGG	1 cut(s)	324
NdeI	CATATG	1 cut(s)	1504
NdeII	GATC	7 cut(s)	206, 457, 1030, 1055, 1119, 1448, 1719
NlaIII	CATG	6 cut(s)	193, 328, 451, 1333, 1414, 1420
NlaIV	GGNNCC	9 cut(s)	97, 166, 322, 372, 408, 732, 1214, 1245, 1527
NmeAIII	GCCGAG	1 cut(s)	1213
NmuCI	GTSAC	1 cut(s)	229
NsiI	ATGCAT	1 cut(s)	1357
NspI	RCATGY	2 cut(s)	193, 1333
PagI	TCATGA	1 cut(s)	1416
PceI	AGGCCT	1 cut(s)	1193
PciI	ACATGT	2 cut(s)	189, 1329
PciSI	GCTCTTC	2 cut(s)	1074, 1651
PcsI	WCGNNNNNNNCGW	1 cut(s)	1378
PctI	GAATGC	1 cut(s)	49
PdmI	GAANNNNTTC	2 cut(s)	85, 915
PfeI	GAWTC	4 cut(s)	212, 1157, 1344, 1482
PflMI	CCANNNNNTGG	1 cut(s)	1253
PkrI	GCNGC	8 cut(s)	35, 156, 811, 862, 1147, 1366, 1561, 1615
PleI	GAGTC	3 cut(s)	16, 384, 1382
PpsI	GAGTC	3 cut(s)	16, 384, 1382
PpuMI	RGGWCCY	1 cut(s)	1525
PscI	ACATGT	2 cut(s)	189, 1329
PsiI	TTATAA	1 cut(s)	1533
Psp1406I	AACGTT	1 cut(s)	1137
Psp5II	RGGWCCY	1 cut(s)	1525
Psp6I	CCWGG	3 cut(s)	337, 528, 1238
PspEI	GGTNACC	1 cut(s)	524
PspGI	CCWGG	3 cut(s)	337, 528, 1238
PspN4I	GGNNCC	9 cut(s)	97, 166, 322, 372, 408, 732, 1214, 1245, 1527
PspPI	GGNCC	7 cut(s)	730, 1019, 1204, 1244, 1283, 1525, 1569
PspPPI	RGGWCCY	1 cut(s)	1525
PstNI	CAGNNNCTG	1 cut(s)	1028
PsuI	RGATCY	1 cut(s)	1055
PvuII	CAGCTG	2 cut(s)	1148, 1613
RsaI	GTAC	2 cut(s)	298, 1609
RsaNI	GTAC	2 cut(s)	297, 1608
RseI	CAYNNNNRTG	1 cut(s)	1415
SapI	GCTCTTC	2 cut(s)	1074, 1651
SaqAI	TTAA	5 cut(s)	390, 866, 1100, 1478, 1620
SatI	GCNGC	8 cut(s)	34, 155, 810, 861, 1146, 1365, 1560, 1614
Sau3AI	GATC	7 cut(s)	206, 457, 1030, 1055, 1119, 1448, 1719
Sau96I	GGNCC	7 cut(s)	730, 1019, 1204, 1244, 1283, 1525, 1569
ScaI	AGTACT	1 cut(s)	298
SchI	GAGTC	3 cut(s)	17, 385, 1382
ScrFI	CCNGG	3 cut(s)	339, 530, 1240
SduI	GDGCHC	5 cut(s)	98, 658, 946, 1085, 1321
SfaNI	GCATC	6 cut(s)	185, 504, 1252, 1342, 1385, 1681
SinI	GGWCC	7 cut(s)	730, 1019, 1204, 1244, 1283, 1525, 1569
SmiMI	CAYNNNNRTG	1 cut(s)	1415
SmlI	CTYRAG	4 cut(s)	538, 887, 1517, 1781
SmoI	CTYRAG	4 cut(s)	538, 887, 1517, 1781
Sse9I	AATT	4 cut(s)	813, 882, 894, 1596
SseBI	AGGCCT	1 cut(s)	1193
SsiI	CCGC	4 cut(s)	33, 154, 1555, 1771
SspMI	CTAG	2 cut(s)	147, 1428
StuI	AGGCCT	1 cut(s)	1193
StyD4I	CCNGG	3 cut(s)	337, 528, 1238
StyI	CCWWGG	3 cut(s)	324, 343, 411
TaaI	ACNGT	1 cut(s)	1607
TaiI	ACGT	5 cut(s)	337, 582, 972, 1140, 1756
TaqI	TCGA	1 cut(s)	1347
TaqII	GACCGA	2 cut(s)	1271, 1557
TasI	AATT	4 cut(s)	813, 882, 894, 1596
TatI	WGTACW	2 cut(s)	296, 1607
TauI	GCSGC	2 cut(s)	36, 157
TfiI	GAWTC	4 cut(s)	212, 1157, 1344, 1482
Tru1I	TTAA	5 cut(s)	390, 866, 1100, 1478, 1620
Tru9I	TTAA	5 cut(s)	390, 866, 1100, 1478, 1620
TscAI	CASTG	3 cut(s)	115, 747, 1545
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	6 cut(s)	809, 860, 1145, 1364, 1559, 1613
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	6 cut(s)	207, 489, 644, 690, 828, 1686
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	3 cut(s)	115, 747, 1545
Van91I	CCANNNNNTGG	1 cut(s)	1253
VneI	GTGCAC	1 cut(s)	1081
VpaK11BI	GGWCC	7 cut(s)	730, 1019, 1204, 1244, 1283, 1525, 1569
XapI	RAATTY	1 cut(s)	882
XbaI	TCTAGA	1 cut(s)	146
XceI	RCATGY	2 cut(s)	193, 1333
XmnI	GAANNNNTTC	2 cut(s)	85, 915
XspI	CTAG	2 cut(s)	147, 1428
ZrmI	AGTACT	1 cut(s)	298
Zsp2I	ATGCAT	1 cut(s)	1357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.