AT5G65760

serine carboxypeptidase S28 family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
26308220 .. 26311037
2818 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G65760.1

Sequence Viewer

Length: 1548 bp
ATGGCGAGCCATTTTTGCTTGCTTCTGATCTTCACTTTCTTCACTCTAGTGTTTCCGTCAAACGGATCTTCACTGTCTTCTTCCAAGCTTTTACCTCGTTTCCCTCGCTACACTTTCCAGAACCGAGAAGCCAGAATCCAGCAGTTCCGGGGAGATCGAAACGAGTATCGATACGAGACTAAGTTCTTCTCACAGCAGCTGGACCACTTCAGCTTCGCCGATCTTCCCAAATTCTCTCAACGCTACCTCATCAATTCCGATCACTGGCTTGGTGCTTCTGCGCTTGGACCTATCTTCCTTTACTGCGGCAACGAAGGTGATATTGAATGGTTTGCTACAAACTCTGGATTCATTTGGGATATCGCTCCCAAGTTCGGTGCCTTGCTTGTTTTCCCCGAGCATAGGTATTATGGAGAGTCTATGCCTTATGGAAGCAGGGAAGAAGCTTACAAGAACGCTACCACTTTATCATATCTCACTACTGAGCAAGCTCTTGCTGATTTTGCTGTTTTTGTCACTGATTTGAAACGCAACTTGTCTGCGGAAGCTTGCCCAGTTGTGTTGTTTGGTGGATCATATGGTGGAATGTTAGCAGCATGGATGAGGCTCAAGTATCCTCACATTGCAATAGGAGCTTTAGCTTCCTCAGCTCCAATTCTTCAGTTTGAAGATGTTGTACCTCCTGAGACGTTCTATGACATTGCATCAAATGATTTCAAGCGTGAGAGTAGCAGCTGCTTCAATACCATTAAGGACTCGTGGGATGCAATAATAGCAGAGGGTCAGAAGGAAAATGGCCTTCTGCAGTTGACGAAAACTTTTCACTTTTGCCGGGTGTTGAACAGTACTGATGACCTTTCAGACTGGCTGGACTCTGCCTATAGTTATTTGGCAATGGTGGATTATCCGTATCCTGCTGACTTCATGATGCCTTTGCCTGGACATCCCATTAGAGAGGTCTGCAGAAAAATTGACGGTGCTGGTAGTAATGCTAGCATCCTAGATCGCATATATGCAGGGATAAGTGTGTACTACAACTATACTGGAAATGTTGACTGCTTCAAGTTGGATGATGACCCTCATGGGTTGGATGGATGGAATTGGCAGGCATGCACGGAGATGGTAATGCCCATGTCTAGCAACCAAGAAAACAGCATGTTTCCAGGTTATGGTTTTAATTACTCTTCATACAAAGAGGAATGCTGGAATACATTCCGAGTTAATCCAAGACCCAAATGGGTCACAACAGAGTTCGGTGGACATGATATAGCGACCACCTTGAAGTCATTTGGAAGTAACATCATTTTCTCAAATGGTCTGTTAGATCCTTGGAGTGGTGGCAGTGTTCTCAAGAACTTATCTGATACCATTGTTGCTCTCGTCACAAAAGAAGGTGCACATCACTTGGATCTACGACCTTCAACACCAGAAGACCCGAAATGGCTTGTGGACCAGCGGGAAGCCGAGATACGGTTGATTCAAGGATGGATCGAAACTTATCGAGTAGAAAAAGAAGCTAAGGTTTCTCTGTTAAAACGTTCTTGGTAA

Protein Analysis

515

Amino Acids

58.57

Weight (kDa)

5.26

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S28 PF05577 65 - 487 8.3e-88 Serine carboxypeptidase S28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 377
AccB7I CCANNNNNTGG 1 cut(s) 1169
AciI CCGC 3 cut(s) 306, 542, 1456
AclI AACGTT 1 cut(s) 1537
AclWI GGATC 5 cut(s) 73, 580, 1319, 1416, 1496
AcsI RAATTY 1 cut(s) 230
AcuI CTGAAG 2 cut(s) 193, 644
AfaI GTAC 3 cut(s) 678, 847, 1031
AfiI CCNNNNNNNGG 8 cut(s) 62, 264, 374, 402, 938, 1169, 1334, 1470
AjnI CCWGG 2 cut(s) 937, 1162
AleI CACNNNNGTG 1 cut(s) 47
Alw21I GWGCWC 1 cut(s) 1399
Alw26I GTCTC 2 cut(s) 170, 680
Alw44I GTGCAC 1 cut(s) 1395
AlwI GGATC 5 cut(s) 73, 580, 1319, 1416, 1496
AlwNI CAGNNNCTG 1 cut(s) 199
Ama87I CYCGRG 1 cut(s) 395
AoxI GGCC 1 cut(s) 796
ApaLI GTGCAC 1 cut(s) 1395
ApeKI GCWGC 4 cut(s) 196, 593, 732, 735
ApoI RAATTY 1 cut(s) 230
Asp700I GAANNNNTTC 1 cut(s) 1211
AspLEI GCGC 1 cut(s) 283
AspS9I GGNCC 3 cut(s) 202, 287, 1450
AsuC2I CCSGG 2 cut(s) 149, 833
AsuHPI GGTGA 1 cut(s) 329
AsuNHI GCTAGC 1 cut(s) 992
AvaI CYCGRG 1 cut(s) 395
AvaII GGWCC 3 cut(s) 202, 287, 1450
BaeGI GKGCMC 1 cut(s) 1399
BaeI ACNNNNGTAYC 2 cut(s) 1356, 1389
BanI GGYRCC 1 cut(s) 377
BarI GAAGNNNNNNTAC 4 cut(s) 660, 692, 1452, 1484
BauI CACGAG 1 cut(s) 757
BbsI GAAGAC 2 cut(s) 69, 1437
Bbv12I GWGCWC 1 cut(s) 1399
BbvCI CCTCAGC 1 cut(s) 646
BbvI GCAGC 4 cut(s) 208, 605, 722, 744
BccI CCATC 4 cut(s) 1085, 1089, 1114, 1479
BciT130I CCWGG 2 cut(s) 939, 1164
BciVI GTATCC 2 cut(s) 624, 921
BcnI CCSGG 2 cut(s) 149, 833
BcoDI GTCTC 2 cut(s) 170, 680
BfaI CTAG 4 cut(s) 47, 993, 1001, 1137
BfmI CTRYAG 3 cut(s) 803, 880, 961
BfuI GTATCC 2 cut(s) 624, 921
BisI GCNGC 5 cut(s) 197, 307, 594, 733, 736
BlsI GCNGC 5 cut(s) 198, 308, 595, 734, 737
BmcAI AGTACT 1 cut(s) 847
Bme1390I CCNGG 4 cut(s) 149, 833, 939, 1164
Bme18I GGWCC 3 cut(s) 202, 287, 1450
BmeT110I CYCGRG 1 cut(s) 395
BmgT120I GGNCC 3 cut(s) 202, 287, 1450
BmiI GGNNCC 1 cut(s) 379
BmrFI CCNGG 4 cut(s) 149, 833, 939, 1164
BmrI ACTGGG 1 cut(s) 548
BmsI GCATC 4 cut(s) 713, 754, 918, 1005
BmtI GCTAGC 1 cut(s) 996
BmuI ACTGGG 1 cut(s) 548
BpiI GAAGAC 2 cut(s) 69, 1437
Bpu10I CCTNAGC 2 cut(s) 646, 1518
BpuEI CTTGAG 2 cut(s) 593, 1334
BpuMI CCSGG 2 cut(s) 149, 833
Bsa29I ATCGAT 1 cut(s) 169
BsaJI CCNNGG 2 cut(s) 148, 1328
Bsc4I CCNNNNNNNGG 8 cut(s) 62, 264, 374, 402, 938, 1169, 1334, 1470
Bse1I ACTGG 4 cut(s) 269, 554, 869, 1048
Bse3DI GCAATG 3 cut(s) 621, 699, 900
BseBI CCWGG 2 cut(s) 939, 1164
BseCI ATCGAT 1 cut(s) 169
BseDI CCNNGG 2 cut(s) 148, 1328
BseGI GGATG 8 cut(s) 606, 769, 943, 996, 1075, 1096, 1100, 1490
BseLI CCNNNNNNNGG 8 cut(s) 62, 264, 374, 402, 938, 1169, 1334, 1470
BseMI GCAATG 3 cut(s) 621, 699, 900
BseMII CTCAG 3 cut(s) 474, 660, 675
BseNI ACTGG 4 cut(s) 269, 554, 869, 1048
BseSI GKGCMC 1 cut(s) 1399
BseXI GCAGC 4 cut(s) 208, 605, 722, 744
BshFI GGCC 1 cut(s) 798
BshNI GGYRCC 1 cut(s) 377
BshVI ATCGAT 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 1399
BsiHKCI CYCGRG 1 cut(s) 395
BsiSI CCGG 2 cut(s) 148, 832
BslI CCNNNNNNNGG 8 cut(s) 62, 264, 374, 402, 938, 1169, 1334, 1470
BsmAI GTCTC 2 cut(s) 170, 680
BsmBI CGTCTC 1 cut(s) 680
BsmI GAATGC 1 cut(s) 1205
BsnI GGCC 1 cut(s) 798
BsoBI CYCGRG 1 cut(s) 395
Bsp1286I GDGCHC 1 cut(s) 1399
BspACI CCGC 3 cut(s) 306, 542, 1456
BspANI GGCC 1 cut(s) 798
BspCNI CTCAG 3 cut(s) 475, 659, 676
BspDI ATCGAT 1 cut(s) 169
BspHI TCATGA 1 cut(s) 924
BspLI GGNNCC 1 cut(s) 379
BspMAI CTGCAG 2 cut(s) 807, 965
BspOI GCTAGC 1 cut(s) 996
BspPI GGATC 5 cut(s) 73, 580, 1319, 1416, 1496
BspT107I GGYRCC 1 cut(s) 377
BsrDI GCAATG 3 cut(s) 621, 699, 900
BsrI ACTGG 4 cut(s) 269, 554, 869, 1048
BssECI CCNNGG 2 cut(s) 148, 1328
BssSI CACGAG 1 cut(s) 757
BssT1I CCWWGG 1 cut(s) 1328
Bst2BI CACGAG 1 cut(s) 757
Bst2UI CCWGG 2 cut(s) 939, 1164
Bst4CI ACNGT 4 cut(s) 75, 845, 977, 1473
Bst6I CTCTTC 1 cut(s) 1189
BstC8I GCNNGC 7 cut(s) 7, 20, 489, 550, 994, 1107, 1111
BstDEI CTNAG 5 cut(s) 180, 483, 646, 684, 1518
BstF5I GGATG 8 cut(s) 606, 769, 943, 996, 1075, 1096, 1100, 1490
BstHHI GCGC 1 cut(s) 283
BstMAI GTCTC 2 cut(s) 170, 680
BstMWI GCNNNNNNNGC 5 cut(s) 15, 503, 632, 647, 773
BstNI CCWGG 2 cut(s) 939, 1164
BstNSI RCATGY 2 cut(s) 1113, 1159
BstSCI CCNGG 4 cut(s) 147, 831, 937, 1162
BstSFI CTRYAG 3 cut(s) 803, 880, 961
BstSLI GKGCMC 1 cut(s) 1399
BstV1I GCAGC 4 cut(s) 208, 605, 722, 744
BstV2I GAAGAC 2 cut(s) 69, 1437
BstX2I RGATCY 3 cut(s) 65, 1324, 1408
BstYI RGATCY 3 cut(s) 65, 1324, 1408
Bsu15I ATCGAT 1 cut(s) 169
BsuI GTATCC 2 cut(s) 624, 921
BsuRI GGCC 1 cut(s) 798
BsuTUI ATCGAT 1 cut(s) 169
BtsCI GGATG 8 cut(s) 606, 769, 943, 996, 1075, 1096, 1100, 1490
BtsI GCAGTG 1 cut(s) 1348
BtsIMutI CAGTG 4 cut(s) 71, 262, 516, 1348
Cac8I GCNNGC 7 cut(s) 7, 20, 489, 550, 994, 1107, 1111
CaiI CAGNNNCTG 1 cut(s) 199
CciI TCATGA 1 cut(s) 924
CfoI GCGC 1 cut(s) 283
Cfr13I GGNCC 3 cut(s) 202, 287, 1450
ClaI ATCGAT 1 cut(s) 169
Csp6I GTAC 3 cut(s) 677, 846, 1030
CviAII CATG 7 cut(s) 597, 925, 1082, 1110, 1132, 1156, 1262
CviQI GTAC 3 cut(s) 677, 846, 1030
DdeI CTNAG 5 cut(s) 180, 483, 646, 684, 1518
Eam1104I CTCTTC 1 cut(s) 1189
EarI CTCTTC 1 cut(s) 1189
Eco130I CCWWGG 1 cut(s) 1328
Eco32I GATATC 1 cut(s) 361
Eco47I GGWCC 3 cut(s) 202, 287, 1450
Eco57I CTGAAG 2 cut(s) 193, 644
Eco88I CYCGRG 1 cut(s) 395
EcoRII CCWGG 2 cut(s) 937, 1162
EcoRV GATATC 1 cut(s) 361
EcoT14I CCWWGG 1 cut(s) 1328
ErhI CCWWGG 1 cut(s) 1328
Esp3I CGTCTC 1 cut(s) 680
FaeI CATG 7 cut(s) 600, 928, 1085, 1113, 1135, 1159, 1265
FatI CATG 7 cut(s) 596, 924, 1081, 1109, 1131, 1155, 1261
FauI CCCGC 1 cut(s) 1449
FauNDI CATATG 1 cut(s) 577
Fnu4HI GCNGC 5 cut(s) 197, 307, 594, 733, 736
FokI GGATG 8 cut(s) 613, 776, 930, 983, 1082, 1103, 1107, 1497
Fsp4HI GCNGC 5 cut(s) 197, 307, 594, 733, 736
FspBI CTAG 4 cut(s) 47, 993, 1001, 1137
GlaI GCGC 1 cut(s) 282
GluI GCNGC 5 cut(s) 197, 307, 594, 733, 736
HaeIII GGCC 1 cut(s) 798
HapII CCGG 2 cut(s) 148, 832
HhaI GCGC 1 cut(s) 283
Hin1II CATG 7 cut(s) 600, 928, 1085, 1113, 1135, 1159, 1265
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HincII GTYRAC 2 cut(s) 810, 1054
HindII GTYRAC 2 cut(s) 810, 1054
HindIII AAGCTT 3 cut(s) 86, 444, 546
HinfI GANTC 6 cut(s) 135, 348, 416, 755, 872, 1477
HpaII CCGG 2 cut(s) 148, 832
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 6 cut(s) 810, 1030, 1054, 1259, 1397, 1450
Hpy188I TCNGA 6 cut(s) 27, 259, 786, 862, 1217, 1363
Hpy188III TCNNGA 5 cut(s) 118, 345, 683, 925, 1351
Hpy8I GTNNAC 6 cut(s) 810, 1030, 1054, 1259, 1397, 1450
HpyAV CCTTC 5 cut(s) 308, 781, 809, 1385, 1428
HpyCH4III ACNGT 4 cut(s) 75, 845, 977, 1473
HpyCH4IV ACGT 2 cut(s) 689, 1537
HpyCH4V TGCA 8 cut(s) 626, 704, 767, 805, 963, 1016, 1113, 1397
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 503, 632, 647, 773
HpyF3I CTNAG 5 cut(s) 180, 483, 646, 684, 1518
HpySE526I ACGT 2 cut(s) 689, 1537
Hsp92II CATG 7 cut(s) 600, 928, 1085, 1113, 1135, 1159, 1265
HspAI GCGC 1 cut(s) 281
LmnI GCTCC 3 cut(s) 370, 632, 655
Lsp1109I GCAGC 4 cut(s) 208, 605, 722, 744
LweI GCATC 4 cut(s) 713, 754, 918, 1005
MaeI CTAG 4 cut(s) 47, 993, 1001, 1137
MaeII ACGT 2 cut(s) 689, 1537
MaeIII GTNAC 4 cut(s) 514, 1240, 1295, 1381
MflI RGATCY 3 cut(s) 65, 1324, 1408
MhlI GDGCHC 1 cut(s) 1399
MluCI AATT 6 cut(s) 230, 253, 654, 969, 1099, 1177
MlyI GAGTC 3 cut(s) 425, 749, 866
MmeI TCCRAC 2 cut(s) 1047, 1068
MroXI GAANNNNTTC 1 cut(s) 1211
MseI TTAA 4 cut(s) 750, 1176, 1221, 1532
MslI CAYNNNNRTG 2 cut(s) 47, 1118
MspA1I CMGCKG 3 cut(s) 199, 735, 1456
MspI CCGG 2 cut(s) 148, 832
MspR9I CCNGG 4 cut(s) 149, 833, 939, 1164
Mva1269I GAATGC 1 cut(s) 1205
MvaI CCWGG 2 cut(s) 939, 1164
MwoI GCNNNNNNNGC 5 cut(s) 15, 503, 632, 647, 773
NciI CCSGG 2 cut(s) 149, 833
NdeI CATATG 1 cut(s) 577
NheI GCTAGC 1 cut(s) 992
NlaIII CATG 7 cut(s) 600, 928, 1085, 1113, 1135, 1159, 1265
NlaIV GGNNCC 1 cut(s) 379
NmeAIII GCCGAG 1 cut(s) 1489
NmuCI GTSAC 3 cut(s) 514, 1240, 1381
NspI RCATGY 2 cut(s) 1113, 1159
OliI CACNNNNGTG 1 cut(s) 47
PaeI GCATGC 1 cut(s) 1113
PagI TCATGA 1 cut(s) 924
PctI GAATGC 1 cut(s) 1205
PdmI GAANNNNTTC 1 cut(s) 1211
PfeI GAWTC 3 cut(s) 135, 348, 1477
PflMI CCANNNNNTGG 1 cut(s) 1169
PkrI GCNGC 5 cut(s) 198, 308, 595, 734, 737
PleI GAGTC 3 cut(s) 424, 749, 866
PpsI GAGTC 3 cut(s) 424, 749, 866
Psp1406I AACGTT 1 cut(s) 1537
Psp6I CCWGG 2 cut(s) 937, 1162
PspGI CCWGG 2 cut(s) 937, 1162
PspN4I GGNNCC 1 cut(s) 379
PspPI GGNCC 3 cut(s) 202, 287, 1450
PstI CTGCAG 2 cut(s) 807, 965
PstNI CAGNNNCTG 1 cut(s) 199
PsuI RGATCY 3 cut(s) 65, 1324, 1408
PvuII CAGCTG 2 cut(s) 199, 735
RsaI GTAC 3 cut(s) 678, 847, 1031
RsaNI GTAC 3 cut(s) 677, 846, 1030
RseI CAYNNNNRTG 2 cut(s) 47, 1118
SaqAI TTAA 4 cut(s) 750, 1176, 1221, 1532
SatI GCNGC 5 cut(s) 197, 307, 594, 733, 736
Sau96I GGNCC 3 cut(s) 202, 287, 1450
ScaI AGTACT 1 cut(s) 847
SchI GAGTC 3 cut(s) 425, 749, 866
ScrFI CCNGG 4 cut(s) 149, 833, 939, 1164
SduI GDGCHC 1 cut(s) 1399
SfaNI GCATC 4 cut(s) 713, 754, 918, 1005
SfcI CTRYAG 3 cut(s) 803, 880, 961
SinI GGWCC 3 cut(s) 202, 287, 1450
SmiMI CAYNNNNRTG 2 cut(s) 47, 1118
SmlI CTYRAG 2 cut(s) 608, 1349
SmoI CTYRAG 2 cut(s) 608, 1349
SphI GCATGC 1 cut(s) 1113
Sse9I AATT 6 cut(s) 230, 253, 654, 969, 1099, 1177
SsiI CCGC 3 cut(s) 306, 542, 1456
SspMI CTAG 4 cut(s) 47, 993, 1001, 1137
StyD4I CCNGG 4 cut(s) 147, 831, 937, 1162
StyI CCWWGG 1 cut(s) 1328
TaaI ACNGT 4 cut(s) 75, 845, 977, 1473
TaiI ACGT 2 cut(s) 692, 1540
TaqI TCGA 4 cut(s) 157, 169, 1491, 1501
TasI AATT 6 cut(s) 230, 253, 654, 969, 1099, 1177
TatI WGTACW 2 cut(s) 845, 1029
TauI GCSGC 1 cut(s) 309
TfiI GAWTC 3 cut(s) 135, 348, 1477
Tru1I TTAA 4 cut(s) 750, 1176, 1221, 1532
Tru9I TTAA 4 cut(s) 750, 1176, 1221, 1532
TscAI CASTG 4 cut(s) 78, 269, 523, 1348
TseFI GTSAC 3 cut(s) 514, 1240, 1381
TseI GCWGC 4 cut(s) 196, 593, 732, 735
Tsp45I GTSAC 3 cut(s) 514, 1240, 1381
TspDTI ATGAA 3 cut(s) 340, 913, 1176
TspGWI ACGGA 4 cut(s) 45, 78, 897, 1130
TspRI CASTG 4 cut(s) 78, 269, 523, 1348
Van91I CCANNNNNTGG 1 cut(s) 1169
VneI GTGCAC 1 cut(s) 1395
VpaK11BI GGWCC 3 cut(s) 202, 287, 1450
XapI RAATTY 1 cut(s) 230
XceI RCATGY 2 cut(s) 1113, 1159
XcmI CCANNNNNNNNNTGG 1 cut(s) 1233
XmnI GAANNNNTTC 1 cut(s) 1211
XspI CTAG 4 cut(s) 47, 993, 1001, 1137
ZrmI AGTACT 1 cut(s) 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.