Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0009817

Physical Location & Seq

Genomic Coordinates Reverse (-)

20639940 .. 20642176

Gene Structure 2237 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG215800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGACCGAGGGTCAGAAACAAAATGGGCTGCACCAGCTGACAAAAACCTTCCATTTATGTGGAGAATTAAAGAGGACAGAAGATCTTGTAGATTGGTTGGAGTCTGCCTATAGTTATTTGGCGATGGTGAACTACCCATATGGGTCGGAATTTATGATGCCTTTGCCCGGACACCCAATTAGAGAGGTTTGCAGAAAGATTGATGGTTGTCCTGATGGGACTAGCACTTTGGAGCGCATATTTGAAGGCATAAGTGTATATCACAATTACAGTGGAAAAGCTGACTGCTTTGAGCTGGAAGATGAATCTGATGTGGGCACAGATGGTTGGAATTGGCAGGCTTGCACAGAAATGGTTATGCCAATGTCTAGTAGCCGGGATAGAAGCATGTTTCAAACATATGATTATAATTTCTCCTCTTTTCAAGAGTGGTGCTGGAAGCAGCTCAATGCGAAACCAAGGCCTACATGGATAACAACAGAGTTTGGTGGACATGATATTAAGGCCACTTTGAAAAACGTTGGAAGTAACATAATCTTCTCCAATGGCTTATTGGATCCATGGAGTGGTGGCAGTGTTCTCCAGAATGTATCTGAATCTATTGTTGCTCTCGTTACTGAAGAAGGTGCTCATCACATAGACTTGCGATTTTCAACTAAAGGGGATCCTGAATGGTTGGTTGAGCAAAGGGAAAGTGAGATTAAGCTGATACAGGGCTGGTTAGATAATTTCTATCAAGAAAAGAAAGCAGCTTTTGACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001525 GO:0001568 GO:0001944 GO:0003008 GO:0003013 GO:0003073 GO:0003085 GO:0003674 GO:0003824 GO:0004177 GO:0006508 GO:0006807 GO:0006950 GO:0007275 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008233 GO:0008238 GO:0008239 GO:0009611 GO:0009653 GO:0010594 GO:0010632 GO:0016787 GO:0019538 GO:0030334 GO:0032501 GO:0032502 GO:0032879 GO:0035239 GO:0035295 GO:0040012 GO:0042060 GO:0043170 GO:0043535 GO:0044238 GO:0045776 GO:0048514 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051239 GO:0051270 GO:0060055 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0072358 GO:0072359 GO:0140096 GO:1901564 GO:2000145

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

254

Amino Acids

29.09

Weight (kDa)

4.79

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S28	PF05577	6 - 231	3.3e-27	Serine carboxypeptidase S28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65760
fragaria_vesca	FvH4_1g18520 FvH4_1g18520 FvH4_1g18520 FvH4_1g18520 FvH4_1g18520
malus_domestica	MD15G1302800.v1.1
prunus_persica	Prupe.6G213900_v2.0.a1 Prupe.6G213900_v2.0.a1
pyrus_communis	pycom15g26610
rosa_chinensis	RchiOBHm_Chr2g0109161
rosa_laevigata	RLG00000017719
rosa_multiflora	Rmu_co8489283.1_g000001 Rmu_sc0005459.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134450
rosa_rugosa	Rorug02G0157700
rosa_samantha	Rh2AG209700 Rh2BG220100 Rh2CG212200 Rh2DG215800 Rh2DG215900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	408
AccB7I	CCANNNNNTGG	1 cut(s)	566
AclI	AACGTT	1 cut(s)	519
AclWI	GGATC	4 cut(s)	551, 564, 659, 672
AcsI	RAATTY	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	639
AfiI	CCNNNNNNNGG	2 cut(s)	167, 566
AflIII	ACRYGT	1 cut(s)	759
AgsI	TTSAA	5 cut(s)	245, 395, 425, 514, 654
AhdI	GACNNNNNGTC	1 cut(s)	9
AluBI	AGCT	6 cut(s)	37, 281, 295, 445, 706, 752
AluI	AGCT	6 cut(s)	37, 281, 295, 445, 706, 752
Alw21I	GWGCWC	1 cut(s)	631
AlwI	GGATC	4 cut(s)	551, 564, 659, 672
AoxI	GGCC	2 cut(s)	461, 504
ApeKI	GCWGC	3 cut(s)	28, 442, 749
ApoI	RAATTY	1 cut(s)	149
ArsI	GACNNNNNNTTYG	2 cut(s)	211, 243
AspLEI	GCGC	1 cut(s)	237
AsuC2I	CCSGG	2 cut(s)	168, 377
AsuHPI	GGTGA	1 cut(s)	139
BaeGI	GKGCMC	1 cut(s)	320
BamHI	GGATCC	2 cut(s)	556, 664
Bbv12I	GWGCWC	1 cut(s)	631
BbvI	GCAGC	3 cut(s)	15, 454, 761
BccI	CCATC	4 cut(s)	118, 197, 209, 317
BcnI	CCSGG	2 cut(s)	168, 377
BfaI	CTAG	2 cut(s)	222, 369
BfmI	CTRYAG	1 cut(s)	109
BglII	AGATCT	1 cut(s)	82
BisI	GCNGC	3 cut(s)	29, 443, 750
BlsI	GCNGC	3 cut(s)	30, 444, 751
Bme1390I	CCNGG	2 cut(s)	168, 377
BmeRI	GACNNNNNGTC	1 cut(s)	9
BmiI	GGNNCC	2 cut(s)	558, 666
BmrFI	CCNGG	2 cut(s)	168, 377
BmsI	GCATC	1 cut(s)	147
BpmI	CTGGAG	1 cut(s)	566
BpuMI	CCSGG	2 cut(s)	168, 377
BsaJI	CCNNGG	3 cut(s)	6, 458, 560
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 566
BseDI	CCNNGG	3 cut(s)	6, 458, 560
BseLI	CCNNNNNNNGG	2 cut(s)	167, 566
BseRI	GAGGAG	1 cut(s)	406
BseSI	GKGCMC	1 cut(s)	320
BseXI	GCAGC	3 cut(s)	15, 454, 761
BsgI	GTGCAG	1 cut(s)	14
BshFI	GGCC	2 cut(s)	463, 506
BsiHKAI	GWGCWC	1 cut(s)	631
BsiSI	CCGG	2 cut(s)	168, 376
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	2 cut(s)	167, 566
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	2 cut(s)	463, 506
Bsp1286I	GDGCHC	2 cut(s)	320, 631
Bsp143I	GATC	3 cut(s)	82, 556, 664
Bsp19I	CCATGG	1 cut(s)	560
BspANI	GGCC	2 cut(s)	463, 506
BspLI	GGNNCC	2 cut(s)	558, 666
BspPI	GGATC	4 cut(s)	551, 564, 659, 672
BssECI	CCNNGG	3 cut(s)	6, 458, 560
BssMI	GATC	3 cut(s)	82, 556, 664
BssT1I	CCWWGG	2 cut(s)	458, 560
Bst4CI	ACNGT	1 cut(s)	272
BstC8I	GCNNGC	2 cut(s)	339, 343
BstDSI	CCRYGG	1 cut(s)	560
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	3 cut(s)	85, 559, 667
BstMBI	GATC	3 cut(s)	82, 556, 664
BstMWI	GCNNNNNNNGC	1 cut(s)	34
BstNSI	RCATGY	2 cut(s)	391, 763
BstSCI	CCNGG	2 cut(s)	166, 375
BstSFI	CTRYAG	1 cut(s)	109
BstSLI	GKGCMC	1 cut(s)	320
BstV1I	GCAGC	3 cut(s)	15, 454, 761
BstX2I	RGATCY	3 cut(s)	82, 556, 664
BstXI	CCANNNNNNTGG	1 cut(s)	59
BstYI	RGATCY	3 cut(s)	82, 556, 664
BsuRI	GGCC	2 cut(s)	463, 506
BtgI	CCRYGG	1 cut(s)	560
BtgZI	GCGATG	1 cut(s)	137
BtsI	GCAGTG	1 cut(s)	580
BtsIMutI	CAGTG	2 cut(s)	277, 580
Cac8I	GCNNGC	2 cut(s)	339, 343
CfoI	GCGC	1 cut(s)	237
CspCI	CAANNNNNGTGG	2 cut(s)	253, 288
CviAII	CATG	5 cut(s)	388, 468, 494, 561, 760
DpnI	GATC	3 cut(s)	84, 558, 666
DpnII	GATC	3 cut(s)	82, 556, 664
DriI	GACNNNNNGTC	1 cut(s)	9
Eam1105I	GACNNNNNGTC	1 cut(s)	9
Eco130I	CCWWGG	2 cut(s)	458, 560
Eco147I	AGGCCT	1 cut(s)	463
Eco57I	CTGAAG	1 cut(s)	639
EcoT14I	CCWWGG	2 cut(s)	458, 560
ErhI	CCWWGG	2 cut(s)	458, 560
FaeI	CATG	5 cut(s)	391, 471, 497, 564, 763
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	5 cut(s)	387, 467, 493, 560, 759
FauNDI	CATATG	2 cut(s)	139, 400
Fnu4HI	GCNGC	3 cut(s)	29, 443, 750
Fsp4HI	GCNGC	3 cut(s)	29, 443, 750
FspBI	CTAG	2 cut(s)	222, 369
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	3 cut(s)	29, 443, 750
GsuI	CTGGAG	1 cut(s)	566
HaeIII	GGCC	2 cut(s)	463, 506
HapII	CCGG	2 cut(s)	168, 376
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	5 cut(s)	391, 471, 497, 564, 763
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HinfI	GANTC	3 cut(s)	101, 305, 596
HpaII	CCGG	2 cut(s)	168, 376
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	2 cut(s)	130, 491
Hpy188I	TCNGA	4 cut(s)	15, 148, 310, 595
Hpy188III	TCNNGA	5 cut(s)	212, 425, 583, 668, 737
Hpy8I	GTNNAC	2 cut(s)	130, 491
HpyAV	CCTTC	3 cut(s)	58, 239, 617
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	3 cut(s)	31, 192, 345
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
HpySE526I	ACGT	1 cut(s)	519
Hsp92II	CATG	5 cut(s)	391, 471, 497, 564, 763
HspAI	GCGC	1 cut(s)	235
Kzo9I	GATC	3 cut(s)	82, 556, 664
LmnI	GCTCC	1 cut(s)	232
Lsp1109I	GCAGC	3 cut(s)	15, 454, 761
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	2 cut(s)	222, 369
MaeII	ACGT	1 cut(s)	519
MaeIII	GTNAC	2 cut(s)	527, 613
MalI	GATC	3 cut(s)	84, 558, 666
MboI	GATC	3 cut(s)	82, 556, 664
MboII	GAAGA	4 cut(s)	92, 311, 529, 632
MflI	RGATCY	3 cut(s)	82, 556, 664
MhlI	GDGCHC	2 cut(s)	320, 631
MluCI	AATT	7 cut(s)	65, 149, 177, 265, 331, 409, 727
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	4 cut(s)	78, 126, 308, 502
MnlI	CCTC	3 cut(s)	66, 178, 427
MseI	TTAA	3 cut(s)	68, 501, 702
MslI	CAYNNNNRTG	2 cut(s)	57, 350
MspA1I	CMGCKG	1 cut(s)	37
MspI	CCGG	2 cut(s)	168, 376
MspR9I	CCNGG	2 cut(s)	168, 377
MwoI	GCNNNNNNNGC	1 cut(s)	34
NciI	CCSGG	2 cut(s)	168, 377
NcoI	CCATGG	1 cut(s)	560
NdeI	CATATG	2 cut(s)	139, 400
NdeII	GATC	3 cut(s)	82, 556, 664
NlaIII	CATG	5 cut(s)	391, 471, 497, 564, 763
NlaIV	GGNNCC	2 cut(s)	558, 666
NspI	RCATGY	2 cut(s)	391, 763
PceI	AGGCCT	1 cut(s)	463
PciI	ACATGT	1 cut(s)	759
PfeI	GAWTC	2 cut(s)	305, 596
PflMI	CCANNNNNTGG	1 cut(s)	566
PkrI	GCNGC	3 cut(s)	30, 444, 751
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PscI	ACATGT	1 cut(s)	759
PsiI	TTATAA	1 cut(s)	408
Psp1406I	AACGTT	1 cut(s)	519
PspN4I	GGNNCC	2 cut(s)	558, 666
PsuI	RGATCY	3 cut(s)	82, 556, 664
PvuII	CAGCTG	1 cut(s)	37
RseI	CAYNNNNRTG	2 cut(s)	57, 350
SaqAI	TTAA	3 cut(s)	68, 501, 702
SatI	GCNGC	3 cut(s)	29, 443, 750
Sau3AI	GATC	3 cut(s)	82, 556, 664
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	2 cut(s)	168, 377
SduI	GDGCHC	2 cut(s)	320, 631
SfaNI	GCATC	1 cut(s)	147
SfcI	CTRYAG	1 cut(s)	109
SmiMI	CAYNNNNRTG	2 cut(s)	57, 350
Sse9I	AATT	7 cut(s)	65, 149, 177, 265, 331, 409, 727
SseBI	AGGCCT	1 cut(s)	463
SspMI	CTAG	2 cut(s)	222, 369
StuI	AGGCCT	1 cut(s)	463
StyD4I	CCNGG	2 cut(s)	166, 375
StyI	CCWWGG	2 cut(s)	458, 560
TaaI	ACNGT	1 cut(s)	272
TaiI	ACGT	1 cut(s)	522
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	7 cut(s)	65, 149, 177, 265, 331, 409, 727
TfiI	GAWTC	2 cut(s)	305, 596
Tru1I	TTAA	3 cut(s)	68, 501, 702
Tru9I	TTAA	3 cut(s)	68, 501, 702
TscAI	CASTG	2 cut(s)	277, 580
TseI	GCWGC	3 cut(s)	28, 442, 749
TspDTI	ATGAA	1 cut(s)	318
TspRI	CASTG	2 cut(s)	277, 580
Van91I	CCANNNNNTGG	1 cut(s)	566
XapI	RAATTY	1 cut(s)	149
XceI	RCATGY	2 cut(s)	391, 763
XcmI	CCANNNNNNNNNTGG	2 cut(s)	465, 550
XspI	CTAG	2 cut(s)	222, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.