AT5G65910

BSD domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012324
Physical Location & Seq
Reverse (-)
26361420 .. 26363488
2069 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G65910.1

Sequence Viewer

Length: 1299 bp
ATGGCTTGGTTAGCTAGATCCATAGCGAACTCACTCAAGCTCGATGAGGAAGATGAAGATGATGATAAGCATCTGAATCAACAGCCGTCGGAATCTGTATCGGATTCACAGTCTCCACGAGGCGTTAAGGAAGACATTAGCGAACTTACCAAGACCTTGAGAACCCAATTTTGGGGTGTAGCTTCGTTCCTCTCGCAACCTTCTTCATCTCCGGATCTTCAGGAGAGAAATCAAACTCCCGATCATCCGGAGGAAGATGAGGATCTAATCGCTGGGATTAAGAACGATTTCGCTGAGATTGGTGGGAGATTCAGGACTGGGATTTCGAAACTATCTGGGAACTTACCTGTGTCTGAGTTCACAAAGATCGCTTCGAATTTCTTACAATTGAGTTCAGAAGATGTGGATCCGAAAGATTACGACGTAATCGGAGTTACAGAGGAATTAGTTGCGTTTGTGAAGGATCTTGCGATGCATCCTGAGACTTGGTTGGATTTTCCTTTACCTGATGACGACGATAGCTTTGATGACTTTGAATTGGCCGATGCTCAATACGAGCACGCTTTAGCTGTAGAAAGGCTAGCACCGAGCTTGGCTTCTTTGAGGATTGAGCTTTGCCCTGAATATATGACTGAGAATTGCTTCTGGAGGATTTACTTTGTTCTTGTGCATCCTAAACTCAGTAAAGACCATGCCTTGCTTCTCTCCACTCCTCAGGTACTCGAAGCAAGATCAATGTTATCTCAGGAACTACAGAAACGAAGCAAATTACCTGTAGAAGCAGGGAGTTCTGAAGCTAATACTGTCATTGTGGAACCTCTTACTGTGCCTCCTTCACCAGAAACAGCAGCTGTTAAAATCGTAAATCCAGTCGAGTCATCTGACGTTGAAACAGACAAGCACCCTATTGAGAGCAAAGAGATACAAATTGTTGACAAATCTGTCATTGAAGAAAGAAGCACATCCACTGCTTCTTCATCTAGATTTATTAATGTGCAAGTGGATGATGAAGACGACGACGATGCAGATGATTGGTTGAATGATGAAGAGACTTCATCAGTTAGCGCCATTGGAGGAAGATCAACCACAAATCATCCTTTTGGTGAAGACGAAGAAGATGTATCATTCAGTGATCTAGAAGAAGAAGACGATAACGAAGGAGACGTGAAAGTGAGTTACAAGAACCTTACTAACTCTGGTTCTGATTCTTCAGACAAAAAATCACCAGATTGGGTTCAGCTAAAAGAGGTAAAAGAGAAGAAAAAATCAAACGACTGGCTTGATGTTGATGCAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

432

Amino Acids

48.2

Weight (kDa)

4.24

Isoelectric Point (pI)

55.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 176 - 229 5.6e-14 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65910
fragaria_vesca FvH4_1g18060
malus_domestica MD02G1188800.v1.1 MD15G1299800.v1.1
prunus_persica Prupe.6G217900_v2.0.a1 Prupe.6G217900_v2.0.a1
pyrus_communis pycom02g15320 pycom15g26230
rosa_chinensis RchiOBHm_Chr2g0108531
rosa_laevigata RLG00000017676
rosa_multiflora Rmu_co8465681.1_g000001 Rmu_sc0007574.1_g000012
rosa_roxburghii Rroxscaffold_2G00135050
rosa_rugosa Rorug02G0154100
rosa_samantha Rh2AG203000 Rh2BG216000 Rh2CG207000 Rh2DG210200
rosa_wichuraiana Rw2G016220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 941
AccIII TCCGGA 2 cut(s) 211, 247
AclWI GGATC 6 cut(s) 12, 222, 270, 401, 414, 471
AcoI YGGCCR 1 cut(s) 540
AcsI RAATTY 1 cut(s) 376
AcuI CTGAAG 3 cut(s) 203, 813, 1194
AfaI GTAC 1 cut(s) 720
AfiI CCNNNNNNNGG 2 cut(s) 171, 172
AgsI TTSAA 4 cut(s) 536, 890, 950, 1039
AjiI CACGTC 1 cut(s) 1165
AjuI GAANNNNNNNTTGG 2 cut(s) 154, 186
Alw21I GWGCWC 1 cut(s) 561
Alw26I GTCTC 4 cut(s) 117, 476, 1043, 1155
AlwI GGATC 6 cut(s) 12, 222, 270, 401, 414, 471
AlwNI CAGNNNCTG 1 cut(s) 851
Aor13HI TCCGGA 2 cut(s) 211, 247
AoxI GGCC 1 cut(s) 540
ApeKI GCWGC 1 cut(s) 848
ApoI RAATTY 1 cut(s) 376
ArsI GACNNNNNNTTYG 4 cut(s) 307, 339, 506, 538
AseI ATTAAT 1 cut(s) 990
Asp700I GAANNNNTTC 2 cut(s) 287, 641
AspLEI GCGC 1 cut(s) 1067
AsuHPI GGTGA 3 cut(s) 828, 1115, 1215
AsuII TTCGAA 2 cut(s) 326, 374
AsuNHI GCTAGC 1 cut(s) 580
AxyI CCTNAGG 1 cut(s) 714
BamHI GGATCC 1 cut(s) 406
BauI CACGAG 1 cut(s) 117
BbsI GAAGAC 4 cut(s) 138, 1017, 1113, 1152
Bbv12I GWGCWC 1 cut(s) 561
BbvI GCAGC 1 cut(s) 860
BceAI ACGGC 1 cut(s) 70
BcgI CGANNNNNNTGC 2 cut(s) 1004, 1038
BcoDI GTCTC 4 cut(s) 117, 476, 1043, 1155
BfaI CTAG 4 cut(s) 15, 581, 981, 1136
BfmI CTRYAG 3 cut(s) 570, 752, 774
BfoI RGCGCY 1 cut(s) 1068
BisI GCNGC 1 cut(s) 849
BlsI GCNGC 1 cut(s) 850
BmgBI CACGTC 1 cut(s) 1165
BmiI GGNNCC 2 cut(s) 408, 816
BmrI ACTGGG 1 cut(s) 327
BmsI GCATC 7 cut(s) 79, 462, 484, 535, 679, 1012, 1279
BmtI GCTAGC 1 cut(s) 584
BmuI ACTGGG 1 cut(s) 327
BpiI GAAGAC 4 cut(s) 138, 1017, 1113, 1152
BpmI CTGGAG 1 cut(s) 667
Bpu14I TTCGAA 2 cut(s) 326, 374
BpuEI CTTGAG 2 cut(s) 20, 178
BsaBI GATNNNNATC 3 cut(s) 69, 261, 405
BsaWI WCCGGW 2 cut(s) 211, 247
BsaXI ACNNNNNCTCC 2 cut(s) 814, 844
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 172
Bse1I ACTGG 3 cut(s) 322, 869, 1280
Bse21I CCTNAGG 1 cut(s) 714
Bse8I GATNNNNATC 3 cut(s) 69, 261, 405
BseAI TCCGGA 2 cut(s) 211, 247
BseGI GGATG 6 cut(s) 244, 475, 670, 962, 1009, 1093
BseJI GATNNNNATC 3 cut(s) 69, 261, 405
BseLI CCNNNNNNNGG 2 cut(s) 171, 172
BseMII CTCAG 7 cut(s) 285, 345, 471, 624, 694, 728, 758
BseNI ACTGG 3 cut(s) 322, 869, 1280
BseRI GAGGAG 1 cut(s) 702
BseXI GCAGC 1 cut(s) 860
BseYI CCCAGC 1 cut(s) 272
BshFI GGCC 1 cut(s) 542
BsiHKAI GWGCWC 1 cut(s) 561
BsiSI CCGG 2 cut(s) 212, 248
BslI CCNNNNNNNGG 2 cut(s) 171, 172
BsmAI GTCTC 4 cut(s) 117, 476, 1043, 1155
BsmBI CGTCTC 1 cut(s) 1155
BsnI GGCC 1 cut(s) 542
Bsp119I TTCGAA 2 cut(s) 326, 374
Bsp1286I GDGCHC 1 cut(s) 561
Bsp13I TCCGGA 2 cut(s) 211, 247
BspANI GGCC 1 cut(s) 542
BspCNI CTCAG 7 cut(s) 286, 346, 472, 625, 693, 727, 757
BspEI TCCGGA 2 cut(s) 211, 247
BspLI GGNNCC 2 cut(s) 408, 816
BspOI GCTAGC 1 cut(s) 584
BspPI GGATC 6 cut(s) 12, 222, 270, 401, 414, 471
BspT104I TTCGAA 2 cut(s) 326, 374
BsrI ACTGG 3 cut(s) 322, 869, 1280
BssSI CACGAG 1 cut(s) 117
Bst2BI CACGAG 1 cut(s) 117
Bst4CI ACNGT 3 cut(s) 111, 805, 826
Bst6I CTCTTC 1 cut(s) 1041
BstBI TTCGAA 2 cut(s) 326, 374
BstC8I GCNNGC 2 cut(s) 561, 582
BstDEI CTNAG 7 cut(s) 294, 354, 480, 633, 680, 714, 744
BstF5I GGATG 6 cut(s) 244, 475, 670, 962, 1009, 1093
BstH2I RGCGCY 1 cut(s) 1068
BstHHI GCGC 1 cut(s) 1067
BstMAI GTCTC 4 cut(s) 117, 476, 1043, 1155
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstSFI CTRYAG 3 cut(s) 570, 752, 774
BstV1I GCAGC 1 cut(s) 860
BstV2I GAAGAC 4 cut(s) 138, 1017, 1113, 1152
BstX2I RGATCY 5 cut(s) 17, 214, 262, 406, 463
BstYI RGATCY 5 cut(s) 17, 214, 262, 406, 463
Bsu36I CCTNAGG 1 cut(s) 714
BsuRI GGCC 1 cut(s) 542
BtgZI GCGATG 1 cut(s) 485
BtrI CACGTC 1 cut(s) 1165
BtsCI GGATG 6 cut(s) 244, 475, 670, 962, 1009, 1093
BtsI GCAGTG 2 cut(s) 966, 1299
BtsIMutI CAGTG 3 cut(s) 966, 1135, 1299
Cac8I GCNNGC 2 cut(s) 561, 582
CaiI CAGNNNCTG 1 cut(s) 851
CfoI GCGC 1 cut(s) 1067
Csp6I GTAC 1 cut(s) 719
CviAII CATG 1 cut(s) 692
CviQI GTAC 1 cut(s) 719
DdeI CTNAG 7 cut(s) 294, 354, 480, 633, 680, 714, 744
DrdI GACNNNNNNGTC 1 cut(s) 941
DseDI GACNNNNNNGTC 1 cut(s) 941
EaeI YGGCCR 1 cut(s) 540
Eam1104I CTCTTC 1 cut(s) 1041
EarI CTCTTC 1 cut(s) 1041
Eco57I CTGAAG 3 cut(s) 203, 813, 1194
Eco81I CCTNAGG 1 cut(s) 714
EcoT22I ATGCAT 1 cut(s) 477
Esp3I CGTCTC 1 cut(s) 1155
FaeI CATG 1 cut(s) 695
FaiI YATR 4 cut(s) 23, 627, 629, 693
FatI CATG 1 cut(s) 691
Fnu4HI GCNGC 1 cut(s) 849
FokI GGATG 6 cut(s) 231, 462, 657, 949, 1016, 1080
Fsp4HI GCNGC 1 cut(s) 849
FspBI CTAG 4 cut(s) 15, 581, 981, 1136
GlaI GCGC 1 cut(s) 1066
GluI GCNGC 1 cut(s) 849
GsaI CCCAGC 1 cut(s) 276
GsuI CTGGAG 1 cut(s) 667
HaeII RGCGCY 1 cut(s) 1068
HaeIII GGCC 1 cut(s) 542
HapII CCGG 2 cut(s) 212, 248
HhaI GCGC 1 cut(s) 1067
Hin1II CATG 1 cut(s) 695
Hin6I GCGC 1 cut(s) 1065
HinP1I GCGC 1 cut(s) 1065
HincII GTYRAC 1 cut(s) 934
HindII GTYRAC 1 cut(s) 934
HinfI GANTC 6 cut(s) 76, 92, 104, 309, 875, 1205
HpaII CCGG 2 cut(s) 212, 248
HphI GGTGA 3 cut(s) 828, 1115, 1215
Hpy166II GTNNAC 2 cut(s) 360, 934
Hpy8I GTNNAC 2 cut(s) 360, 934
Hpy99I CGWCG 5 cut(s) 91, 425, 518, 1019, 1022
HpyAV CCTTC 4 cut(s) 210, 454, 843, 1151
HpyCH4III ACNGT 3 cut(s) 111, 805, 826
HpyCH4IV ACGT 3 cut(s) 423, 885, 1164
HpyCH4V TGCA 5 cut(s) 475, 670, 997, 1025, 1292
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 7 cut(s) 294, 354, 480, 633, 680, 714, 744
HpySE526I ACGT 3 cut(s) 423, 885, 1164
Hsp92II CATG 1 cut(s) 695
HspAI GCGC 1 cut(s) 1065
Kpn2I TCCGGA 2 cut(s) 211, 247
Lsp1109I GCAGC 1 cut(s) 860
LweI GCATC 7 cut(s) 79, 462, 484, 535, 679, 1012, 1279
MaeI CTAG 4 cut(s) 15, 581, 981, 1136
MaeII ACGT 3 cut(s) 423, 885, 1164
MaeIII GTNAC 2 cut(s) 433, 1175
MfeI CAATTG 1 cut(s) 386
MflI RGATCY 5 cut(s) 17, 214, 262, 406, 463
MhlI GDGCHC 1 cut(s) 561
MluCI AATT 8 cut(s) 167, 376, 386, 443, 536, 637, 767, 927
MlyI GAGTC 1 cut(s) 884
MmeI TCCRAC 2 cut(s) 69, 471
Mph1103I ATGCAT 1 cut(s) 477
MroI TCCGGA 2 cut(s) 211, 247
MroXI GAANNNNTTC 2 cut(s) 287, 641
MseI TTAA 4 cut(s) 126, 279, 855, 990
MspA1I CMGCKG 1 cut(s) 851
MspI CCGG 2 cut(s) 212, 248
MunI CAATTG 1 cut(s) 386
MwoI GCNNNNNNNGC 1 cut(s) 11
NheI GCTAGC 1 cut(s) 580
NlaIII CATG 1 cut(s) 695
NlaIV GGNNCC 2 cut(s) 408, 816
NsiI ATGCAT 1 cut(s) 477
NspV TTCGAA 2 cut(s) 326, 374
PcsI WCGNNNNNNNCGW 1 cut(s) 1161
PdmI GAANNNNTTC 2 cut(s) 287, 641
PfeI GAWTC 5 cut(s) 76, 92, 104, 309, 1205
PkrI GCNGC 1 cut(s) 850
PleI GAGTC 1 cut(s) 883
PpsI GAGTC 1 cut(s) 883
PshBI ATTAAT 1 cut(s) 990
PspFI CCCAGC 1 cut(s) 272
PspN4I GGNNCC 2 cut(s) 408, 816
PstNI CAGNNNCTG 1 cut(s) 851
PsuI RGATCY 5 cut(s) 17, 214, 262, 406, 463
PvuII CAGCTG 1 cut(s) 851
RsaI GTAC 1 cut(s) 720
RsaNI GTAC 1 cut(s) 719
SaqAI TTAA 4 cut(s) 126, 279, 855, 990
SatI GCNGC 1 cut(s) 849
SchI GAGTC 1 cut(s) 884
SduI GDGCHC 1 cut(s) 561
SfaNI GCATC 7 cut(s) 79, 462, 484, 535, 679, 1012, 1279
SfcI CTRYAG 3 cut(s) 570, 752, 774
SfuI TTCGAA 2 cut(s) 326, 374
SmlI CTYRAG 2 cut(s) 35, 157
SmoI CTYRAG 2 cut(s) 35, 157
Sse9I AATT 8 cut(s) 167, 376, 386, 443, 536, 637, 767, 927
SspMI CTAG 4 cut(s) 15, 581, 981, 1136
TaaI ACNGT 3 cut(s) 111, 805, 826
TaiI ACGT 3 cut(s) 426, 888, 1167
TaqI TCGA 5 cut(s) 42, 326, 374, 723, 873
TasI AATT 8 cut(s) 167, 376, 386, 443, 536, 637, 767, 927
TfiI GAWTC 5 cut(s) 76, 92, 104, 309, 1205
Tru1I TTAA 4 cut(s) 126, 279, 855, 990
Tru9I TTAA 4 cut(s) 126, 279, 855, 990
TscAI CASTG 3 cut(s) 973, 1135, 1299
TseI GCWGC 1 cut(s) 848
TspDTI ATGAA 6 cut(s) 69, 195, 966, 1023, 1044, 1059
TspRI CASTG 3 cut(s) 973, 1135, 1299
VspI ATTAAT 1 cut(s) 990
XapI RAATTY 1 cut(s) 376
XbaI TCTAGA 2 cut(s) 980, 1135
XmnI GAANNNNTTC 2 cut(s) 287, 641
XspI CTAG 4 cut(s) 15, 581, 981, 1136
Zsp2I ATGCAT 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.