Rorug02G0154100

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012324
Physical Location & Seq
Forward (+)
13643646 .. 13644830
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0154100.1

Sequence Viewer

Length: 1185 bp
ATGCATGAGCGTGTCCAGGTTATGGCACCGAATAACATCTGCTCTTTGGGTATGCAGAGATTTTGGGCGCAGTCCCCTCCTTTGGGTCTTTTCTTCCGCACCGCCACCACCAGCACCACCACCGTAGACAAGGTATTGCATCGTATGAATTATATCTCTTTATATAATTATCATGCCATGGAAGATAACCTGCAAAGCACTCTTATTTGCGGAGGACAATTTTATGACAAAGAATCGTATAGGTCCAAAAAGTCTCATTGGCAGTATTTTGATCGACAATGGTATAAGCCGGGTGCCACTGCTGAATCCACTGATCGTGATGAGTACCTAAATGGTTGCAATGGTTTAGTTTTGTTAATGAAATCAGCAACTTATCAGTTTTATGTTTGCAATCCCATCACAAGACAACAAGTTGCCATACCTAAAGCCTGTGTCCACCAAAACCATGATGATCAGCATTTTTGTGCTGCTTTGGCTTTTGACCCTTCCGAATCTGCTTATCACTTCAGAGTTGTTAGAATTGATTATTCGGCATCCTACTCAGCTGTGCTGGATATATTCTCGTCTGAATATGGACTGTGGGTTCGACATTGGCTGCAAATTGACCCAGGTTTTACTGAGGGATTCAAAAGCTCCAAGTTGTGCAGGCATTTTGTTTACTTGCGGGGCACGCTATACAGCGTAGCCCTATCCTGGAACCATTTATGCATTGACCTCAATACTGTTGCAGCTTCTGCCCTTGAACTTCCTGTTCCAGATAATGAAAAGACCGGAGCCATGGGATGTCTTGGGGTGTCGATGAATAGTCTCTGCTATATGAAGCGAATGCTCGATAATTCGAAGGACTTTCACAATCTGGCAGTTTGGTATAATGTTGAAGAATCTGGGGAATGGATTCTCAGATATAGTGTTTCTTGTCTCTTATTGGGATACGGATTCCAGTCTCGAGGTTATGACTACGATGATTCCATGGAACCCTGTGCAATAAGTCCAACTTCAGATCTCTTGTTCTATGGGAATCCCAACTTGATTTGTTGTATCCACCTTAAAAGCGAAAAGATGAAATTCGTTTGCGAAACAATCTCTAAAATAGATCCACCTGCTTCTTTCTTGACATTACGTGCATGCTTCGTACCTTTCTACACTCAGTTGAACAAGAGGAATGACGTCTCCACTCCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

394

Amino Acids

45.15

Weight (kDa)

6.49

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 105 - 256 8.7e-07 KIB1-4 beta-propeller
b-prop_At3g26010-like PF24750 106 - 309 3e-13 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 112 - 289 3.7e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65910
fragaria_vesca FvH4_1g18060
malus_domestica MD02G1188800.v1.1 MD15G1299800.v1.1
prunus_persica Prupe.6G217900_v2.0.a1 Prupe.6G217900_v2.0.a1
pyrus_communis pycom02g15320 pycom15g26230
rosa_chinensis RchiOBHm_Chr2g0108531
rosa_laevigata RLG00000017676
rosa_multiflora Rmu_co8465681.1_g000001 Rmu_sc0007574.1_g000012
rosa_roxburghii Rroxscaffold_2G00135050
rosa_rugosa Rorug02G0154100
rosa_samantha Rh2AG203000 Rh2BG216000 Rh2CG207000 Rh2DG210200
rosa_wichuraiana Rw2G016220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1108
AatII GACGTC 1 cut(s) 1170
Acc36I ACCTGC 2 cut(s) 198, 1108
AccB1I GGYRCC 2 cut(s) 25, 293
AccB7I CCANNNNNTGG 1 cut(s) 22
AccI GTMKAC 1 cut(s) 126
AciI CCGC 4 cut(s) 97, 102, 210, 664
AclWI GGATC 1 cut(s) 1088
AcsI RAATTY 1 cut(s) 1064
AcuI CTGAAG 2 cut(s) 490, 981
AcyI GRCGYC 1 cut(s) 1167
AfaI GTAC 2 cut(s) 326, 1134
AfiI CCNNNNNNNGG 4 cut(s) 22, 82, 83, 693
AgsI TTSAA 4 cut(s) 628, 743, 878, 1153
AjnI CCWGG 3 cut(s) 15, 607, 692
AloI GAACNNNNNNTCC 2 cut(s) 567, 599
AluBI AGCT 3 cut(s) 545, 633, 731
AluI AGCT 3 cut(s) 545, 633, 731
Alw26I GTCTC 5 cut(s) 258, 812, 923, 948, 1174
AlwI GGATC 1 cut(s) 1088
AlwNI CAGNNNCTG 1 cut(s) 734
Ama87I CYCGRG 1 cut(s) 945
ApeKI GCWGC 3 cut(s) 467, 595, 728
ApoI RAATTY 1 cut(s) 1064
ArsI GACNNNNNNTTYG 2 cut(s) 567, 599
Asp700I GAANNNNTTC 1 cut(s) 894
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 243
AsuC2I CCSGG 1 cut(s) 291
AsuII TTCGAA 1 cut(s) 839
AvaI CYCGRG 1 cut(s) 945
AvaII GGWCC 1 cut(s) 243
BaeGI GKGCMC 1 cut(s) 671
BanI GGYRCC 2 cut(s) 25, 293
BbvI GCAGC 3 cut(s) 454, 582, 740
BccI CCATC 1 cut(s) 404
BciT130I CCWGG 3 cut(s) 17, 609, 694
BciVI GTATCC 2 cut(s) 923, 1049
BclI TGATCA 1 cut(s) 451
BcnI CCSGG 1 cut(s) 291
BcoDI GTCTC 5 cut(s) 258, 812, 923, 948, 1174
BfuAI ACCTGC 2 cut(s) 198, 1108
BfuI GTATCC 2 cut(s) 923, 1049
BglII AGATCT 1 cut(s) 1000
BisI GCNGC 3 cut(s) 468, 596, 729
BlsI GCNGC 3 cut(s) 469, 597, 730
Bme1390I CCNGG 4 cut(s) 17, 291, 609, 694
Bme18I GGWCC 1 cut(s) 243
BmeT110I CYCGRG 1 cut(s) 945
BmgT120I GGNCC 1 cut(s) 243
BmiI GGNNCC 5 cut(s) 27, 295, 698, 775, 975
BmrFI CCNGG 4 cut(s) 17, 291, 609, 694
BmsI GCATC 2 cut(s) 148, 542
Bpu14I TTCGAA 1 cut(s) 839
BpuMI CCSGG 1 cut(s) 291
BsaAI YACGTR 1 cut(s) 1121
BsaHI GRCGYC 1 cut(s) 1167
BsaJI CCNNGG 4 cut(s) 177, 607, 777, 969
BsaWI WCCGGW 1 cut(s) 770
Bsc4I CCNNNNNNNGG 4 cut(s) 22, 82, 83, 693
Bse1I ACTGG 1 cut(s) 940
Bse3DI GCAATG 1 cut(s) 346
BseBI CCWGG 3 cut(s) 17, 609, 694
BseDI CCNNGG 4 cut(s) 177, 607, 777, 969
BseGI GGATG 2 cut(s) 533, 788
BseLI CCNNNNNNNGG 4 cut(s) 22, 82, 83, 693
BseMI GCAATG 1 cut(s) 346
BseMII CTCAG 4 cut(s) 555, 609, 913, 1160
BseNI ACTGG 1 cut(s) 940
BseSI GKGCMC 1 cut(s) 671
BseXI GCAGC 3 cut(s) 454, 582, 740
BsgI GTGCAG 1 cut(s) 664
BshNI GGYRCC 2 cut(s) 25, 293
BsiHKCI CYCGRG 1 cut(s) 945
BsiSI CCGG 2 cut(s) 290, 771
BslFI GGGAC 1 cut(s) 58
BslI CCNNNNNNNGG 4 cut(s) 22, 82, 83, 693
BsmAI GTCTC 5 cut(s) 258, 812, 923, 948, 1174
BsmBI CGTCTC 1 cut(s) 1174
BsmFI GGGAC 1 cut(s) 58
BsmI GAATGC 1 cut(s) 831
BsoBI CYCGRG 1 cut(s) 945
Bsp119I TTCGAA 1 cut(s) 839
Bsp1286I GDGCHC 1 cut(s) 671
Bsp143I GATC 5 cut(s) 271, 313, 451, 1000, 1093
Bsp19I CCATGG 3 cut(s) 177, 777, 969
BspACI CCGC 4 cut(s) 97, 102, 210, 664
BspCNI CTCAG 4 cut(s) 554, 610, 912, 1159
BspLI GGNNCC 5 cut(s) 27, 295, 698, 775, 975
BspMI ACCTGC 2 cut(s) 198, 1108
BspPI GGATC 1 cut(s) 1088
BspT104I TTCGAA 1 cut(s) 839
BspT107I GGYRCC 2 cut(s) 25, 293
BsrDI GCAATG 1 cut(s) 346
BsrI ACTGG 1 cut(s) 940
BssECI CCNNGG 4 cut(s) 177, 607, 777, 969
BssMI GATC 5 cut(s) 271, 313, 451, 1000, 1093
BssNI GRCGYC 1 cut(s) 1167
BssT1I CCWWGG 3 cut(s) 177, 777, 969
Bst2UI CCWGG 3 cut(s) 17, 609, 694
Bst4CI ACNGT 3 cut(s) 124, 579, 724
BstACI GRCGYC 1 cut(s) 1167
BstAPI GCANNNNNTGC 1 cut(s) 734
BstBAI YACGTR 1 cut(s) 1121
BstBI TTCGAA 1 cut(s) 839
BstC8I GCNNGC 3 cut(s) 647, 671, 1126
BstDEI CTNAG 4 cut(s) 541, 618, 899, 1146
BstDSI CCRYGG 3 cut(s) 177, 777, 969
BstF5I GGATG 2 cut(s) 533, 788
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 5 cut(s) 274, 316, 454, 1003, 1096
BstMAI GTCTC 5 cut(s) 258, 812, 923, 948, 1174
BstMBI GATC 5 cut(s) 271, 313, 451, 1000, 1093
BstMWI GCNNNNNNNGC 3 cut(s) 473, 670, 734
BstNI CCWGG 3 cut(s) 17, 609, 694
BstNSI RCATGY 1 cut(s) 1128
BstSCI CCNGG 4 cut(s) 15, 289, 607, 692
BstSLI GKGCMC 1 cut(s) 671
BstV1I GCAGC 3 cut(s) 454, 582, 740
BstX2I RGATCY 2 cut(s) 1000, 1093
BstYI RGATCY 2 cut(s) 1000, 1093
BsuI GTATCC 2 cut(s) 923, 1049
BtgI CCRYGG 3 cut(s) 177, 777, 969
BtsCI GGATG 2 cut(s) 533, 788
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 2 cut(s) 297, 309
BveI ACCTGC 2 cut(s) 198, 1108
Cac8I GCNNGC 3 cut(s) 647, 671, 1126
CaiI CAGNNNCTG 1 cut(s) 734
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 243
Csp6I GTAC 2 cut(s) 325, 1133
CviAII CATG 7 cut(s) 5, 173, 178, 446, 778, 970, 1125
CviJI RGCY 9 cut(s) 289, 428, 476, 545, 595, 633, 686, 731, 776
CviKI_1 RGCY 9 cut(s) 289, 428, 476, 545, 595, 633, 686, 731, 776
CviQI GTAC 2 cut(s) 325, 1133
DdeI CTNAG 4 cut(s) 541, 618, 899, 1146
DpnI GATC 5 cut(s) 273, 315, 453, 1002, 1095
DpnII GATC 5 cut(s) 271, 313, 451, 1000, 1093
Eco130I CCWWGG 3 cut(s) 177, 777, 969
Eco47I GGWCC 1 cut(s) 243
Eco57I CTGAAG 2 cut(s) 490, 981
Eco88I CYCGRG 1 cut(s) 945
EcoRII CCWGG 3 cut(s) 15, 607, 692
EcoT14I CCWWGG 3 cut(s) 177, 777, 969
EcoT22I ATGCAT 2 cut(s) 6, 710
ErhI CCWWGG 3 cut(s) 177, 777, 969
Esp3I CGTCTC 1 cut(s) 1174
FaeI CATG 7 cut(s) 8, 176, 181, 449, 781, 973, 1128
FalI AAGNNNNNCTT 2 cut(s) 979, 1011
FaqI GGGAC 1 cut(s) 58
FatI CATG 7 cut(s) 4, 172, 177, 445, 777, 969, 1124
FauI CCCGC 1 cut(s) 657
FbaI TGATCA 1 cut(s) 451
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 3 cut(s) 468, 596, 729
FokI GGATG 2 cut(s) 520, 795
Fsp4HI GCNGC 3 cut(s) 468, 596, 729
GlaI GCGC 1 cut(s) 69
GluI GCNGC 3 cut(s) 468, 596, 729
HapII CCGG 2 cut(s) 290, 771
HhaI GCGC 1 cut(s) 70
Hin1I GRCGYC 1 cut(s) 1167
Hin1II CATG 7 cut(s) 8, 176, 181, 449, 781, 973, 1128
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HinfI GANTC 9 cut(s) 233, 305, 491, 624, 881, 895, 936, 965, 1018
HpaII CCGG 2 cut(s) 290, 771
Hpy166II GTNNAC 3 cut(s) 127, 436, 658
Hpy188I TCNGA 5 cut(s) 490, 509, 568, 902, 1000
Hpy188III TCNNGA 4 cut(s) 317, 755, 945, 1111
Hpy8I GTNNAC 3 cut(s) 127, 436, 658
HpyAV CCTTC 2 cut(s) 495, 835
HpyCH4III ACNGT 3 cut(s) 124, 579, 724
HpyCH4IV ACGT 2 cut(s) 1120, 1167
HpyF10VI GCNNNNNNNGC 3 cut(s) 473, 670, 734
HpyF3I CTNAG 4 cut(s) 541, 618, 899, 1146
HpySE526I ACGT 2 cut(s) 1120, 1167
Hsp92I GRCGYC 1 cut(s) 1167
Hsp92II CATG 7 cut(s) 8, 176, 181, 449, 781, 973, 1128
HspAI GCGC 1 cut(s) 68
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 5 cut(s) 271, 313, 451, 1000, 1093
LmnI GCTCC 2 cut(s) 638, 773
Lsp1109I GCAGC 3 cut(s) 454, 582, 740
LweI GCATC 2 cut(s) 148, 542
MaeII ACGT 2 cut(s) 1120, 1167
MalI GATC 5 cut(s) 273, 315, 453, 1002, 1095
MboI GATC 5 cut(s) 271, 313, 451, 1000, 1093
MboII GAAGA 3 cut(s) 85, 194, 890
MflI RGATCY 2 cut(s) 1000, 1093
MhlI GDGCHC 1 cut(s) 671
MluCI AATT 7 cut(s) 148, 166, 218, 519, 600, 835, 1064
MmeI TCCRAC 1 cut(s) 1016
MnlI CCTC 6 cut(s) 87, 206, 613, 725, 941, 1152
Mph1103I ATGCAT 2 cut(s) 6, 710
MroXI GAANNNNTTC 1 cut(s) 894
MseI TTAA 2 cut(s) 356, 1047
MslI CAYNNNNRTG 2 cut(s) 9, 462
MspA1I CMGCKG 1 cut(s) 545
MspI CCGG 2 cut(s) 290, 771
MspR9I CCNGG 4 cut(s) 17, 291, 609, 694
Mva1269I GAATGC 1 cut(s) 831
MvaI CCWGG 3 cut(s) 17, 609, 694
MwoI GCNNNNNNNGC 3 cut(s) 473, 670, 734
NciI CCSGG 1 cut(s) 291
NcoI CCATGG 3 cut(s) 177, 777, 969
NdeII GATC 5 cut(s) 271, 313, 451, 1000, 1093
NlaIII CATG 7 cut(s) 8, 176, 181, 449, 781, 973, 1128
NlaIV GGNNCC 5 cut(s) 27, 295, 698, 775, 975
NsiI ATGCAT 2 cut(s) 6, 710
NspI RCATGY 1 cut(s) 1128
NspV TTCGAA 1 cut(s) 839
PaeI GCATGC 1 cut(s) 1128
PaeR7I CTCGAG 1 cut(s) 945
PaqCI CACCTGC 1 cut(s) 1108
PctI GAATGC 1 cut(s) 831
PdmI GAANNNNTTC 1 cut(s) 894
PfeI GAWTC 9 cut(s) 233, 305, 491, 624, 881, 895, 936, 965, 1018
PflMI CCANNNNNTGG 1 cut(s) 22
PfoI TCCNGGA 1 cut(s) 692
PkrI GCNGC 3 cut(s) 469, 597, 730
Ppu21I YACGTR 1 cut(s) 1121
Psp6I CCWGG 3 cut(s) 15, 607, 692
PspGI CCWGG 3 cut(s) 15, 607, 692
PspN4I GGNNCC 5 cut(s) 27, 295, 698, 775, 975
PspPI GGNCC 1 cut(s) 243
PstNI CAGNNNCTG 1 cut(s) 734
PsuI RGATCY 2 cut(s) 1000, 1093
PvuII CAGCTG 1 cut(s) 545
RsaI GTAC 2 cut(s) 326, 1134
RsaNI GTAC 2 cut(s) 325, 1133
RseI CAYNNNNRTG 2 cut(s) 9, 462
SaqAI TTAA 2 cut(s) 356, 1047
SatI GCNGC 3 cut(s) 468, 596, 729
Sau3AI GATC 5 cut(s) 271, 313, 451, 1000, 1093
Sau96I GGNCC 1 cut(s) 243
ScrFI CCNGG 4 cut(s) 17, 291, 609, 694
SduI GDGCHC 1 cut(s) 671
SfaNI GCATC 2 cut(s) 148, 542
Sfr274I CTCGAG 1 cut(s) 945
SfuI TTCGAA 1 cut(s) 839
SinI GGWCC 1 cut(s) 243
SlaI CTCGAG 1 cut(s) 945
SmiMI CAYNNNNRTG 2 cut(s) 9, 462
SmlI CTYRAG 1 cut(s) 945
SmoI CTYRAG 1 cut(s) 945
SphI GCATGC 1 cut(s) 1128
Sse9I AATT 7 cut(s) 148, 166, 218, 519, 600, 835, 1064
SsiI CCGC 4 cut(s) 97, 102, 210, 664
StyD4I CCNGG 4 cut(s) 15, 289, 607, 692
StyI CCWWGG 3 cut(s) 177, 777, 969
TaaI ACNGT 3 cut(s) 124, 579, 724
TaiI ACGT 2 cut(s) 1123, 1170
TaqI TCGA 6 cut(s) 274, 586, 797, 831, 839, 946
TasI AATT 7 cut(s) 148, 166, 218, 519, 600, 835, 1064
TfiI GAWTC 9 cut(s) 233, 305, 491, 624, 881, 895, 936, 965, 1018
Tru1I TTAA 2 cut(s) 356, 1047
Tru9I TTAA 2 cut(s) 356, 1047
TscAI CASTG 2 cut(s) 304, 316
TseI GCWGC 3 cut(s) 467, 595, 728
TspDTI ATGAA 6 cut(s) 161, 374, 777, 815, 833, 1076
TspGWI ACGGA 1 cut(s) 948
TspRI CASTG 2 cut(s) 304, 316
Van91I CCANNNNNTGG 1 cut(s) 22
VpaK11BI GGWCC 1 cut(s) 243
XapI RAATTY 1 cut(s) 1064
XceI RCATGY 1 cut(s) 1128
XhoI CTCGAG 1 cut(s) 945
XmiI GTMKAC 1 cut(s) 126
XmnI GAANNNNTTC 1 cut(s) 894
ZraI GACGTC 1 cut(s) 1168
Zsp2I ATGCAT 2 cut(s) 6, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.