Prupe.6G217900_v2.0.a1

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0012324
Physical Location & Seq
Reverse (-)
22470558 .. 22473380
2823 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G217900.2

Sequence Viewer

Length: 1458 bp
ATGGCGTGGTTCGCGAAATCCATCGCTAACTCACTCAAGCTCGACGACGAAGAGGACGACGTTTACCACAATACGAACCCTAGCTCCAATACAGACCCAAATTCATCGCCACCCGATCCGCAACCCGACCCCCAATCCGGTTCGCCGTCGACTCCCACAGTCAAAGGCGACCTCTCCGAGCTCACCAAAACCCTGTCCCGCCAGTTCTGGGGCGTCGCCTCCTTCCTCGCCCCGCCGCCCGATCCGACCCATCCTCCTAATCCGTCCGCACCACCCCAACCCGCCGATCTCGAACCTTCTGATGAGGACGTCATCGCGGGAATTCGCAGCGACTTTGCTGAGATCGGCGGGAAGTTCAAGAGCGGGATCTCGAAGCTGTCGAGTAACATAGCGGTCTCGGAGTTCACTAAGATCGCTTCGAATTTGCTTCAGTTTGGATCGGAGGAGGAGGCTGAGGCAGCTGGGGCTGCTCTTGGAGTGACCCAGGAGGTTCTCGCGTTCGTCAGGAATGTCTCTATGCATCCGGAGACTTGGCTGGATTTCCCTCTCTCCGATGATGAAGATTCAGATGATTTTGAATTGTCTGATGTCCAACAAGAGCATGCTCTGGCTGTTGAACGGCTTGCACCGTCATTGGCTGCTCTCAGGATTGAACTTTGCCCTGAGCATATGAGCGAGGCTCACTTTTGGATGATTTACTTCGTGCTCTTGCATCCTAGACTCAGTAAACATGATGCCGAGCTTCTGTCTACACCCAAGATAGTGGAAGCTAGAGCAATGTTGTCTTATGAGTTGAAGAAGGGAGCTAATGAAAAGCAAGAATCAGACCCTTCAGGAAGTGGCACTATTTATGCGAAAGGAATTGCTGATTCCCCAAAAGAACAGCATCTTTCTGTGCCACCTAGTGTTCAATCTGACCTAGTGTCTCCCCATACATCTACCATCAGATCAGCTCCTCAACCAGTGGCAGTTGTTATTGAGACTGAGAAGCACACAGTTCAGAGTAGTGAGATCCAAATTATTGACAAGCCCGTTATTGAGGAAGGGCCATTGAAAGAGACCAAATTTCAGCAGCCACTTTTGAATTCTTCCTCCAAAGTTACGGATGAGAAATATGAGGATGATGCTGATGATTGGTTGAAAGAGGAAACTGCAGAGATAGATGGTGTTCGGGGAACCTCCATCCCTATAGAGAATGACGAGGATGTATCTTTCAGTGATCTTGAGGATGATGATGGAGAGGCAGCCTCAAGTTACAAGAAGGTCACATCTGGCTCTGATTCCTCTACAAAAGACTCAAGAGATTGGGTTCAGCTAAGCAGAACCTCTGCTGATTCAGACAAGGAAATCAACTCTGTTGAGATTAGACATGCTGGGTCTGATCTGGTAAGTTCCCGTAACATGGAGACCAAAGAATCTAATGACTGGCTTGACGTTGAAGACATTGATGTTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

486

Amino Acids

52.98

Weight (kDa)

4.35

Isoelectric Point (pI)

53.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65910
fragaria_vesca FvH4_1g18060
malus_domestica MD02G1188800.v1.1 MD15G1299800.v1.1
prunus_persica Prupe.6G217900_v2.0.a1 Prupe.6G217900_v2.0.a1
pyrus_communis pycom02g15320 pycom15g26230
rosa_chinensis RchiOBHm_Chr2g0108531
rosa_laevigata RLG00000017676
rosa_multiflora Rmu_co8465681.1_g000001 Rmu_sc0007574.1_g000012
rosa_roxburghii Rroxscaffold_2G00135050
rosa_rugosa Rorug02G0154100
rosa_samantha Rh2AG203000 Rh2BG216000 Rh2CG207000 Rh2DG210200
rosa_wichuraiana Rw2G016220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 312
AccBSI CCGCTC 1 cut(s) 363
AccI GTMKAC 2 cut(s) 149, 749
AccII CGCG 3 cut(s) 14, 317, 497
AccIII TCCGGA 1 cut(s) 523
AclWI GGATC 5 cut(s) 110, 236, 374, 445, 1006
AcsI RAATTY 5 cut(s) 100, 321, 421, 1064, 1084
AcuI CTGAAG 2 cut(s) 413, 816
AcyI GRCGYC 2 cut(s) 213, 309
AdeI CACNNNGTG 1 cut(s) 905
AfiI CCNNNNNNNGG 3 cut(s) 137, 208, 1402
AhdI GACNNNNNGTC 1 cut(s) 922
AjnI CCWGG 1 cut(s) 483
AloI GAACNNNNNNTCC 2 cut(s) 68, 100
Alw21I GWGCWC 2 cut(s) 183, 708
Alw26I GTCTC 7 cut(s) 400, 517, 521, 930, 974, 1052, 1400
AlwI GGATC 5 cut(s) 110, 236, 374, 445, 1006
Aor13HI TCCGGA 1 cut(s) 523
AoxI GGCC 1 cut(s) 1046
ApeKI GCWGC 6 cut(s) 327, 458, 467, 638, 1072, 1244
ApoI RAATTY 5 cut(s) 100, 321, 421, 1064, 1084
AspS9I GGNCC 1 cut(s) 1046
AsuHPI GGTGA 1 cut(s) 175
AsuII TTCGAA 1 cut(s) 419
BanII GRGCYC 1 cut(s) 183
BbsI GAAGAC 1 cut(s) 1446
Bbv12I GWGCWC 2 cut(s) 183, 708
BbvCI CCTCAGC 1 cut(s) 453
BbvI GCAGC 6 cut(s) 339, 454, 470, 625, 1084, 1256
BccI CCATC 6 cut(s) 29, 258, 950, 1157, 1190, 1229
BceAI ACGGC 2 cut(s) 130, 635
BciT130I CCWGG 1 cut(s) 485
BcoDI GTCTC 7 cut(s) 400, 517, 521, 930, 974, 1052, 1400
BfaI CTAG 5 cut(s) 81, 717, 771, 903, 920
BfmI CTRYAG 2 cut(s) 1152, 1188
BisI GCNGC 7 cut(s) 236, 328, 459, 468, 639, 1073, 1245
BlpI GCTNAGC 1 cut(s) 1316
BlsI GCNGC 7 cut(s) 237, 329, 460, 469, 640, 1074, 1246
Bme1390I CCNGG 1 cut(s) 485
BmeRI GACNNNNNGTC 1 cut(s) 922
BmgT120I GGNCC 1 cut(s) 1046
BmiI GGNNCC 1 cut(s) 1177
BmrFI CCNGG 1 cut(s) 485
BmsI GCATC 5 cut(s) 529, 721, 724, 895, 1114
BpiI GAAGAC 1 cut(s) 1446
BplI GAGNNNNNCTC 4 cut(s) 664, 696, 1232, 1264
Bpu10I CCTNAGC 2 cut(s) 453, 663
Bpu1102I GCTNAGC 1 cut(s) 1316
Bpu14I TTCGAA 1 cut(s) 419
BpuEI CTTGAG 4 cut(s) 20, 1234, 1244, 1282
BsaHI GRCGYC 2 cut(s) 213, 309
BsaI GGTCTC 3 cut(s) 400, 1052, 1400
BsaJI CCNNGG 1 cut(s) 483
BsaWI WCCGGW 2 cut(s) 137, 523
BsaXI ACNNNNNCTCC 4 cut(s) 68, 98, 238, 268
Bsc4I CCNNNNNNNGG 3 cut(s) 137, 208, 1402
Bse1I ACTGG 3 cut(s) 202, 962, 1430
Bse3DI GCAATG 1 cut(s) 783
BseAI TCCGGA 1 cut(s) 523
BseBI CCWGG 1 cut(s) 485
BseDI CCNNGG 1 cut(s) 483
BseGI GGATG 9 cut(s) 250, 520, 696, 712, 1111, 1126, 1182, 1210, 1234
BseLI CCNNNNNNNGG 3 cut(s) 137, 208, 1402
BseMI GCAATG 1 cut(s) 783
BseMII CTCAG 6 cut(s) 330, 444, 654, 658, 736, 975
BseNI ACTGG 3 cut(s) 202, 962, 1430
BseRI GAGGAG 3 cut(s) 458, 461, 945
BseXI GCAGC 6 cut(s) 339, 454, 470, 625, 1084, 1256
BseYI CCCAGC 2 cut(s) 461, 1373
Bsh1236I CGCG 3 cut(s) 14, 317, 497
BshFI GGCC 1 cut(s) 1048
BsiHKAI GWGCWC 2 cut(s) 183, 708
BsiSI CCGG 2 cut(s) 138, 524
BslFI GGGAC 1 cut(s) 181
BslI CCNNNNNNNGG 3 cut(s) 137, 208, 1402
BsmAI GTCTC 7 cut(s) 400, 517, 521, 930, 974, 1052, 1400
BsmFI GGGAC 1 cut(s) 181
BsnI GGCC 1 cut(s) 1048
Bso31I GGTCTC 3 cut(s) 400, 1052, 1400
Bsp119I TTCGAA 1 cut(s) 419
Bsp1286I GDGCHC 2 cut(s) 183, 708
Bsp13I TCCGGA 1 cut(s) 523
Bsp1720I GCTNAGC 1 cut(s) 1316
Bsp68I TCGCGA 1 cut(s) 14
BspANI GGCC 1 cut(s) 1048
BspCNI CTCAG 6 cut(s) 331, 445, 655, 657, 735, 976
BspEI TCCGGA 1 cut(s) 523
BspFNI CGCG 3 cut(s) 14, 317, 497
BspLI GGNNCC 1 cut(s) 1177
BspMAI CTGCAG 1 cut(s) 1156
BspPI GGATC 5 cut(s) 110, 236, 374, 445, 1006
BspT104I TTCGAA 1 cut(s) 419
BspTNI GGTCTC 3 cut(s) 400, 1052, 1400
BsrBI CCGCTC 1 cut(s) 363
BsrDI GCAATG 1 cut(s) 783
BsrI ACTGG 3 cut(s) 202, 962, 1430
BssECI CCNNGG 1 cut(s) 483
BssNI GRCGYC 2 cut(s) 213, 309
Bst2UI CCWGG 1 cut(s) 485
Bst4CI ACNGT 3 cut(s) 160, 630, 997
Bst6I CTCTTC 1 cut(s) 45
BstACI GRCGYC 2 cut(s) 213, 309
BstBI TTCGAA 1 cut(s) 419
BstC8I GCNNGC 2 cut(s) 603, 624
BstDEI CTNAG 8 cut(s) 339, 408, 453, 644, 663, 722, 984, 1316
BstF5I GGATG 9 cut(s) 250, 520, 696, 712, 1111, 1126, 1182, 1210, 1234
BstFNI CGCG 3 cut(s) 14, 317, 497
BstMAI GTCTC 7 cut(s) 400, 517, 521, 930, 974, 1052, 1400
BstMWI GCNNNNNNNGC 4 cut(s) 11, 458, 464, 467
BstNI CCWGG 1 cut(s) 485
BstNSI RCATGY 2 cut(s) 605, 1373
BstSCI CCNGG 1 cut(s) 483
BstSFI CTRYAG 2 cut(s) 1152, 1188
BstUI CGCG 3 cut(s) 14, 317, 497
BstV1I GCAGC 6 cut(s) 339, 454, 470, 625, 1084, 1256
BstV2I GAAGAC 1 cut(s) 1446
BstX2I RGATCY 2 cut(s) 366, 1011
BstXI CCANNNNNNTGG 1 cut(s) 763
BstYI RGATCY 2 cut(s) 366, 1011
BsuRI GGCC 1 cut(s) 1048
BtgZI GCGATG 3 cut(s) 7, 90, 298
BtsCI GGATG 9 cut(s) 250, 520, 696, 712, 1111, 1126, 1182, 1210, 1234
BtsIMutI CAGTG 2 cut(s) 969, 1222
BtuMI TCGCGA 1 cut(s) 14
Cac8I GCNNGC 2 cut(s) 603, 624
Cfr13I GGNCC 1 cut(s) 1046
CseI GACGC 1 cut(s) 202
CviAII CATG 4 cut(s) 602, 731, 1370, 1402
DdeI CTNAG 8 cut(s) 339, 408, 453, 644, 663, 722, 984, 1316
DraIII CACNNNGTG 1 cut(s) 905
DriI GACNNNNNGTC 1 cut(s) 922
Eam1104I CTCTTC 1 cut(s) 45
Eam1105I GACNNNNNGTC 1 cut(s) 922
EarI CTCTTC 1 cut(s) 45
Ecl136II GAGCTC 1 cut(s) 181
Eco24I GRGCYC 1 cut(s) 183
Eco31I GGTCTC 3 cut(s) 400, 1052, 1400
Eco53kI GAGCTC 1 cut(s) 181
Eco57I CTGAAG 2 cut(s) 413, 816
EcoICRI GAGCTC 1 cut(s) 181
EcoRI GAATTC 2 cut(s) 321, 1084
EcoRII CCWGG 1 cut(s) 483
EcoT22I ATGCAT 1 cut(s) 522
EcoT38I GRGCYC 1 cut(s) 183
FaeI CATG 4 cut(s) 605, 734, 1373, 1405
FaqI GGGAC 1 cut(s) 181
FatI CATG 4 cut(s) 601, 730, 1369, 1401
FauI CCCGC 6 cut(s) 206, 240, 289, 310, 341, 356
FauNDI CATATG 1 cut(s) 669
FblI GTMKAC 2 cut(s) 149, 749
Fnu4HI GCNGC 7 cut(s) 236, 328, 459, 468, 639, 1073, 1245
FokI GGATG 9 cut(s) 237, 507, 699, 703, 1118, 1133, 1169, 1217, 1241
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 7 cut(s) 236, 328, 459, 468, 639, 1073, 1245
FspBI CTAG 5 cut(s) 81, 717, 771, 903, 920
GluI GCNGC 7 cut(s) 236, 328, 459, 468, 639, 1073, 1245
GsaI CCCAGC 2 cut(s) 465, 1377
HaeIII GGCC 1 cut(s) 1048
HapII CCGG 2 cut(s) 138, 524
HgaI GACGC 1 cut(s) 202
Hin1I GRCGYC 2 cut(s) 213, 309
Hin1II CATG 4 cut(s) 605, 734, 1373, 1405
HincII GTYRAC 1 cut(s) 150
HindII GTYRAC 1 cut(s) 150
HinfI GANTC 9 cut(s) 151, 563, 720, 821, 869, 1280, 1295, 1334, 1415
HpaII CCGG 2 cut(s) 138, 524
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 5 cut(s) 64, 150, 405, 728, 750
Hpy8I GTNNAC 5 cut(s) 64, 150, 405, 728, 750
Hpy99I CGWCG 5 cut(s) 47, 50, 62, 151, 218
HpyAV CCTTC 6 cut(s) 232, 306, 793, 840, 1037, 1255
HpyCH4III ACNGT 3 cut(s) 160, 630, 997
HpyCH4IV ACGT 3 cut(s) 60, 309, 1434
HpyCH4V TGCA 4 cut(s) 520, 626, 712, 1154
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 458, 464, 467
HpyF3I CTNAG 8 cut(s) 339, 408, 453, 644, 663, 722, 984, 1316
HpySE526I ACGT 3 cut(s) 60, 309, 1434
Hsp92I GRCGYC 2 cut(s) 213, 309
Hsp92II CATG 4 cut(s) 605, 734, 1373, 1405
Kpn2I TCCGGA 1 cut(s) 523
LmnI GCTCC 3 cut(s) 89, 803, 958
Lsp1109I GCAGC 6 cut(s) 339, 454, 470, 625, 1084, 1256
LweI GCATC 5 cut(s) 529, 721, 724, 895, 1114
MaeI CTAG 5 cut(s) 81, 717, 771, 903, 920
MaeII ACGT 3 cut(s) 60, 309, 1434
MaeIII GTNAC 6 cut(s) 383, 478, 1099, 1253, 1264, 1397
MbiI CCGCTC 1 cut(s) 363
MboII GAAGA 5 cut(s) 62, 572, 808, 1080, 1451
MflI RGATCY 2 cut(s) 366, 1011
MhlI GDGCHC 2 cut(s) 183, 708
MluCI AATT 8 cut(s) 100, 321, 421, 578, 861, 1017, 1064, 1084
MlyI GAGTC 3 cut(s) 145, 714, 1289
MmeI TCCRAC 2 cut(s) 269, 616
Mph1103I ATGCAT 1 cut(s) 522
MroI TCCGGA 1 cut(s) 523
MspA1I CMGCKG 1 cut(s) 461
MspI CCGG 2 cut(s) 138, 524
MspR9I CCNGG 1 cut(s) 485
MvaI CCWGG 1 cut(s) 485
MvnI CGCG 3 cut(s) 14, 317, 497
MwoI GCNNNNNNNGC 4 cut(s) 11, 458, 464, 467
NdeI CATATG 1 cut(s) 669
NlaIII CATG 4 cut(s) 605, 734, 1373, 1405
NlaIV GGNNCC 1 cut(s) 1177
NmeAIII GCCGAG 1 cut(s) 763
NmuCI GTSAC 2 cut(s) 478, 1264
NruI TCGCGA 1 cut(s) 14
NsiI ATGCAT 1 cut(s) 522
NspI RCATGY 2 cut(s) 605, 1373
NspV TTCGAA 1 cut(s) 419
PaeI GCATGC 1 cut(s) 605
PcsI WCGNNNNNNNCGW 2 cut(s) 54, 377
PfeI GAWTC 6 cut(s) 563, 821, 869, 1280, 1334, 1415
PkrI GCNGC 7 cut(s) 237, 329, 460, 469, 640, 1074, 1246
PleI GAGTC 3 cut(s) 145, 714, 1289
PpsI GAGTC 3 cut(s) 145, 714, 1289
Psp124BI GAGCTC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 483
PspFI CCCAGC 2 cut(s) 461, 1373
PspGI CCWGG 1 cut(s) 483
PspN4I GGNNCC 1 cut(s) 1177
PspPI GGNCC 1 cut(s) 1046
PstI CTGCAG 1 cut(s) 1156
PsuI RGATCY 2 cut(s) 366, 1011
PvuII CAGCTG 1 cut(s) 461
RruI TCGCGA 1 cut(s) 14
SacI GAGCTC 1 cut(s) 183
SalI GTCGAC 1 cut(s) 148
SatI GCNGC 7 cut(s) 236, 328, 459, 468, 639, 1073, 1245
Sau96I GGNCC 1 cut(s) 1046
SchI GAGTC 3 cut(s) 145, 714, 1289
ScrFI CCNGG 1 cut(s) 485
SduI GDGCHC 2 cut(s) 183, 708
SfaNI GCATC 5 cut(s) 529, 721, 724, 895, 1114
SfcI CTRYAG 2 cut(s) 1152, 1188
SfuI TTCGAA 1 cut(s) 419
SmlI CTYRAG 4 cut(s) 35, 1223, 1249, 1297
SmoI CTYRAG 4 cut(s) 35, 1223, 1249, 1297
SphI GCATGC 1 cut(s) 605
Sse9I AATT 8 cut(s) 100, 321, 421, 578, 861, 1017, 1064, 1084
SspMI CTAG 5 cut(s) 81, 717, 771, 903, 920
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 483
TaaI ACNGT 3 cut(s) 160, 630, 997
TaiI ACGT 3 cut(s) 63, 312, 1437
TaqI TCGA 6 cut(s) 42, 149, 291, 371, 380, 419
TasI AATT 8 cut(s) 100, 321, 421, 578, 861, 1017, 1064, 1084
TauI GCSGC 1 cut(s) 238
TfiI GAWTC 6 cut(s) 563, 821, 869, 1280, 1334, 1415
TscAI CASTG 2 cut(s) 969, 1222
TseFI GTSAC 2 cut(s) 478, 1264
TseI GCWGC 6 cut(s) 327, 458, 467, 638, 1072, 1244
Tsp45I GTSAC 2 cut(s) 478, 1264
TspDTI ATGAA 3 cut(s) 93, 573, 825
TspGWI ACGGA 2 cut(s) 252, 1118
TspRI CASTG 2 cut(s) 969, 1222
XapI RAATTY 5 cut(s) 100, 321, 421, 1064, 1084
XceI RCATGY 2 cut(s) 605, 1373
XmiI GTMKAC 2 cut(s) 149, 749
XspI CTAG 5 cut(s) 81, 717, 771, 903, 920
ZraI GACGTC 1 cut(s) 310
Zsp2I ATGCAT 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.