FvH4_1g18060

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012324
Physical Location & Seq
Forward (+)
10497149 .. 10499704
2556 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g18060.t1

Sequence Viewer

Length: 1443 bp
ATGTCGTGGCTCGCCAAATCCATCGCCAACTCTCTCAAACTCGACGACGACGAAGACGACTACACCAATCCCAACCCCACCACCAACCAAAACCCTAACTCCAATGACCCCAACTCACCTCAACCCGGCTCGCCGTCCTCCGATCCCCGCGGCGGCGTCAAAGGCGACCTCTCCGAGCTCACCAAAACCCTAACCCGCCAGTTCTGGGGCGTCGCATCCTTCCTCGCCCCACCGCCCGATGCGGCCGCGCCGAAACCCGCCGAGCAGGGACAGCCGTCCGATCCCGAGGTCTCCGAGGAGGACGTGATCGCCGGAATCCGAAGCGATTTCGCGGAGATCGGCGGGAAGTTCAAGAGCGAGATCTCGAAGTTTTCGAGCAATATAAAAGTTTCCGAGTTCACTAAGATCGCTTCGAATTTGCTTCAGTTTGGATCGGAGGAGGAGGCCGAGGCGGCTGGGATTGCTCTCGGTGTCACGCCGGAGGTTCTTGCGTTCGTCAGAAATATCTCTATGCATCCGGAGACTTGGCTTGATTTTCCTCTCTCTGATGATGAAGAATCAGATGATTTCGAATTGTCTGATGTCCAACAAGAGCATGCTCTGGCTGTTGAACGTCTTGCACCGGCGTTGGCTGCTCTCAGGATAGAACTTTGCCCTGAGCATATGAGTGAATCTCACTTCTGGATGATTTACTTTGTGCTCTTGCATCCTAGACTGAGTAAACAAGATACTGAGCTTTTGTCTACACCAAAGATAGTAGAAGTTAGAGCAATGTTGTCTCATGAGTTGAAGAAGGGAAATATGGCAAAGCCTGAATCTGACCCTTCACTAAGTACCGCTGCTTTTTCAAAAGGAATTACTGATTCTCCCAAAGAACAGCAACTTTCTGTGCCTCAGTCTGACTTAGTGCCACCCGAAACATCTACCATGAGATCAGCTCCTCTACCATCAACAGCTGATATTGAGACAGAGAAGCATCCAGTCCAGAGTAGTGAGATCCAAATTGTTGACAAGCCCGTTATTGAAGAAAAACCAGTGAAAGAGACCAAATATCCACTGCCGCCCTCCACATCTTCATCTAAAGTCTTGGATGAAAAAGATGAGGATGATGCTGATGATTGGTTGAAAGAGGAATCAGAGATGGATGGGGATGGTGTTGGTGGAACTTCCATCCCTATAGAGAACGACGAGGATGTATCATTCAGTGATCTTGAGGATGATGATACAGATGTGCCATCAGGTTACAAGAAGGCCACATCTGGCTCTGACTCGTCAGCCAAAGATTCAAGAGACTGGGTTCAGCTAAGCAGAAGTTCTCCTGATTCAGATAAGGACAACAACTCTGTTGAAATCAGACGTGCTGGGTCTCAGGTAAGTTCCCGTAATCCAGAGACCAAAGAATCTAATGACTGGCTTGACGTTGATGACATTGATGTCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

481

Amino Acids

52.46

Weight (kDa)

4.3

Isoelectric Point (pI)

58.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 187 - 242 5.5e-14 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65910
fragaria_vesca FvH4_1g18060
malus_domestica MD02G1188800.v1.1 MD15G1299800.v1.1
prunus_persica Prupe.6G217900_v2.0.a1 Prupe.6G217900_v2.0.a1
pyrus_communis pycom02g15320 pycom15g26230
rosa_chinensis RchiOBHm_Chr2g0108531
rosa_laevigata RLG00000017676
rosa_multiflora Rmu_co8465681.1_g000001 Rmu_sc0007574.1_g000012
rosa_roxburghii Rroxscaffold_2G00135050
rosa_rugosa Rorug02G0154100
rosa_samantha Rh2AG203000 Rh2BG216000 Rh2CG207000 Rh2DG210200
rosa_wichuraiana Rw2G016220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1433
AccI GTMKAC 1 cut(s) 743
AccII CGCG 3 cut(s) 150, 248, 332
AccIII TCCGGA 1 cut(s) 517
AclWI GGATC 4 cut(s) 137, 275, 439, 991
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 1 cut(s) 415
AcuI CTGAAG 1 cut(s) 407
AcyI GRCGYC 2 cut(s) 156, 210
AfaI GTAC 1 cut(s) 835
AfiI CCNNNNNNNGG 3 cut(s) 125, 152, 205
AgsI TTSAA 8 cut(s) 352, 611, 790, 849, 1025, 1126, 1287, 1349
AjiI CACGTC 2 cut(s) 304, 1358
AluBI AGCT 5 cut(s) 178, 736, 938, 956, 1303
AluI AGCT 5 cut(s) 178, 736, 938, 956, 1303
Alw21I GWGCWC 2 cut(s) 180, 702
Alw26I GTCTC 8 cut(s) 295, 515, 783, 959, 1037, 1284, 1371, 1385
AlwI GGATC 4 cut(s) 137, 275, 439, 991
Ama87I CYCGRG 1 cut(s) 284
Aor13HI TCCGGA 1 cut(s) 517
AoxI GGCC 3 cut(s) 243, 444, 1251
ApeKI GCWGC 2 cut(s) 632, 839
ApoI RAATTY 1 cut(s) 415
AspLEI GCGC 1 cut(s) 250
AsuC2I CCSGG 1 cut(s) 126
AsuHPI GGTGA 2 cut(s) 108, 172
AsuII TTCGAA 2 cut(s) 413, 570
AvaI CYCGRG 1 cut(s) 284
BaeI ACNNNNGTAYC 2 cut(s) 1215, 1248
BanII GRGCYC 1 cut(s) 180
BbsI GAAGAC 1 cut(s) 60
Bbv12I GWGCWC 2 cut(s) 180, 702
BbvI GCAGC 2 cut(s) 619, 826
BccI CCATC 7 cut(s) 29, 955, 1135, 1139, 1145, 1178, 1243
BceAI ACGGC 2 cut(s) 118, 259
BcnI CCSGG 1 cut(s) 126
BcoDI GTCTC 8 cut(s) 295, 515, 783, 959, 1037, 1284, 1371, 1385
BfaI CTAG 1 cut(s) 711
BfmI CTRYAG 1 cut(s) 1176
BglI GCCNNNNNGGC 1 cut(s) 452
BglII AGATCT 1 cut(s) 360
BisI GCNGC 8 cut(s) 151, 154, 243, 246, 453, 633, 840, 1061
BlpI GCTNAGC 1 cut(s) 1304
BlsI GCNGC 8 cut(s) 152, 155, 244, 247, 454, 634, 841, 1062
Bme1390I CCNGG 1 cut(s) 126
BmeT110I CYCGRG 1 cut(s) 284
BmgBI CACGTC 2 cut(s) 304, 1358
BmrFI CCNGG 1 cut(s) 126
BmrI ACTGGG 1 cut(s) 1303
BmsI GCATC 6 cut(s) 224, 229, 523, 715, 985, 1099
BmuI ACTGGG 1 cut(s) 1303
BoxI GACNNNNGTC 1 cut(s) 274
BpiI GAAGAC 1 cut(s) 60
BplI GAGNNNNNCTC 4 cut(s) 658, 690, 922, 954
Bpu10I CCTNAGC 1 cut(s) 657
Bpu1102I GCTNAGC 1 cut(s) 1304
Bpu14I TTCGAA 2 cut(s) 413, 570
BpuEI CTTGAG 1 cut(s) 1232
BpuMI CCSGG 1 cut(s) 126
BsaHI GRCGYC 2 cut(s) 156, 210
BsaI GGTCTC 4 cut(s) 295, 1037, 1371, 1385
BsaJI CCNNGG 4 cut(s) 148, 285, 294, 447
BsaWI WCCGGW 1 cut(s) 517
BsaXI ACNNNNNCTCC 4 cut(s) 83, 113, 850, 880
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 152, 205
Bse118I RCCGGY 1 cut(s) 622
Bse1I ACTGG 5 cut(s) 199, 980, 1034, 1298, 1415
Bse3DI GCAATG 1 cut(s) 777
BseAI TCCGGA 1 cut(s) 517
BseDI CCNNGG 4 cut(s) 148, 285, 294, 447
BseLI CCNNNNNNNGG 3 cut(s) 125, 152, 205
BseMI GCAATG 1 cut(s) 777
BseMII CTCAG 6 cut(s) 648, 652, 707, 723, 908, 1382
BseNI ACTGG 5 cut(s) 199, 980, 1034, 1298, 1415
BseRI GAGGAG 4 cut(s) 311, 452, 455, 930
BseX3I CGGCCG 1 cut(s) 243
BseXI GCAGC 2 cut(s) 619, 826
BseYI CCCAGC 2 cut(s) 455, 1361
Bsh1236I CGCG 3 cut(s) 150, 248, 332
Bsh1285I CGRYCG 1 cut(s) 246
BshFI GGCC 3 cut(s) 245, 446, 1253
BsiEI CGRYCG 1 cut(s) 246
BsiHKAI GWGCWC 2 cut(s) 180, 702
BsiHKCI CYCGRG 1 cut(s) 284
BsiSI CCGG 5 cut(s) 126, 312, 479, 518, 623
BslFI GGGAC 1 cut(s) 282
BslI CCNNNNNNNGG 3 cut(s) 125, 152, 205
BsmAI GTCTC 8 cut(s) 295, 515, 783, 959, 1037, 1284, 1371, 1385
BsmFI GGGAC 1 cut(s) 282
BsnI GGCC 3 cut(s) 245, 446, 1253
Bso31I GGTCTC 4 cut(s) 295, 1037, 1371, 1385
BsoBI CYCGRG 1 cut(s) 284
Bsp119I TTCGAA 2 cut(s) 413, 570
Bsp1286I GDGCHC 2 cut(s) 180, 702
Bsp13I TCCGGA 1 cut(s) 517
Bsp1720I GCTNAGC 1 cut(s) 1304
BspANI GGCC 3 cut(s) 245, 446, 1253
BspCNI CTCAG 6 cut(s) 649, 651, 708, 724, 907, 1381
BspEI TCCGGA 1 cut(s) 517
BspFNI CGCG 3 cut(s) 150, 248, 332
BspHI TCATGA 1 cut(s) 781
BspPI GGATC 4 cut(s) 137, 275, 439, 991
BspT104I TTCGAA 2 cut(s) 413, 570
BspTNI GGTCTC 4 cut(s) 295, 1037, 1371, 1385
BsrDI GCAATG 1 cut(s) 777
BsrFI RCCGGY 1 cut(s) 622
BsrI ACTGG 5 cut(s) 199, 980, 1034, 1298, 1415
BssAI RCCGGY 1 cut(s) 622
BssECI CCNNGG 4 cut(s) 148, 285, 294, 447
BssNI GRCGYC 2 cut(s) 156, 210
BstACI GRCGYC 2 cut(s) 156, 210
BstBI TTCGAA 2 cut(s) 413, 570
BstC8I GCNNGC 3 cut(s) 12, 131, 597
BstDSI CCRYGG 1 cut(s) 148
BstFNI CGCG 3 cut(s) 150, 248, 332
BstHHI GCGC 1 cut(s) 250
BstMAI GTCTC 8 cut(s) 295, 515, 783, 959, 1037, 1284, 1371, 1385
BstMCI CGRYCG 1 cut(s) 246
BstMWI GCNNNNNNNGC 5 cut(s) 162, 271, 452, 461, 632
BstNSI RCATGY 1 cut(s) 599
BstPAI GACNNNNGTC 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 124
BstSFI CTRYAG 1 cut(s) 1176
BstUI CGCG 3 cut(s) 150, 248, 332
BstV1I GCAGC 2 cut(s) 619, 826
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 2 cut(s) 360, 996
BstYI RGATCY 2 cut(s) 360, 996
BstZI CGGCCG 1 cut(s) 243
BsuRI GGCC 3 cut(s) 245, 446, 1253
BtgI CCRYGG 1 cut(s) 148
BtgZI GCGATG 1 cut(s) 7
BtrI CACGTC 2 cut(s) 304, 1358
BtsI GCAGTG 1 cut(s) 1055
BtsIMutI CAGTG 3 cut(s) 1041, 1055, 1210
Cac8I GCNNGC 3 cut(s) 12, 131, 597
CciI TCATGA 1 cut(s) 781
CciNI GCGGCCGC 1 cut(s) 243
CfoI GCGC 1 cut(s) 250
Cfr10I RCCGGY 1 cut(s) 622
Cfr42I CCGCGG 1 cut(s) 151
CseI GACGC 2 cut(s) 145, 199
Csp6I GTAC 1 cut(s) 834
CviAII CATG 3 cut(s) 596, 782, 928
CviQI GTAC 1 cut(s) 834
DrdI GACNNNNNNGTC 1 cut(s) 1433
DseDI GACNNNNNNGTC 1 cut(s) 1433
EaeI YGGCCR 1 cut(s) 243
EagI CGGCCG 1 cut(s) 243
Ecl136II GAGCTC 1 cut(s) 178
EclXI CGGCCG 1 cut(s) 243
Eco24I GRGCYC 1 cut(s) 180
Eco31I GGTCTC 4 cut(s) 295, 1037, 1371, 1385
Eco52I CGGCCG 1 cut(s) 243
Eco53kI GAGCTC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 407
Eco88I CYCGRG 1 cut(s) 284
EcoICRI GAGCTC 1 cut(s) 178
EcoT22I ATGCAT 1 cut(s) 516
EcoT38I GRGCYC 1 cut(s) 180
FaeI CATG 3 cut(s) 599, 785, 931
FaqI GGGAC 1 cut(s) 282
FatI CATG 3 cut(s) 595, 781, 927
FauI CCCGC 4 cut(s) 155, 203, 265, 335
FauNDI CATATG 2 cut(s) 663, 1439
FblI GTMKAC 1 cut(s) 743
Fnu4HI GCNGC 8 cut(s) 151, 154, 243, 246, 453, 633, 840, 1061
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 8 cut(s) 151, 154, 243, 246, 453, 633, 840, 1061
FspBI CTAG 1 cut(s) 711
GlaI GCGC 1 cut(s) 249
GluI GCNGC 8 cut(s) 151, 154, 243, 246, 453, 633, 840, 1061
GsaI CCCAGC 2 cut(s) 459, 1365
HaeIII GGCC 3 cut(s) 245, 446, 1253
HapII CCGG 5 cut(s) 126, 312, 479, 518, 623
HgaI GACGC 2 cut(s) 145, 199
HhaI GCGC 1 cut(s) 250
Hin1I GRCGYC 2 cut(s) 156, 210
Hin1II CATG 3 cut(s) 599, 785, 931
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HincII GTYRAC 1 cut(s) 1009
HindII GTYRAC 1 cut(s) 1009
HpaII CCGG 5 cut(s) 126, 312, 479, 518, 623
HphI GGTGA 2 cut(s) 108, 172
Hpy166II GTNNAC 4 cut(s) 399, 722, 744, 1009
Hpy8I GTNNAC 4 cut(s) 399, 722, 744, 1009
Hpy99I CGWCG 5 cut(s) 47, 50, 53, 215, 1190
HpyAV CCTTC 4 cut(s) 229, 787, 834, 1243
HpyCH4IV ACGT 4 cut(s) 303, 613, 1357, 1419
HpyCH4V TGCA 3 cut(s) 514, 620, 706
HpyF10VI GCNNNNNNNGC 5 cut(s) 162, 271, 452, 461, 632
HpySE526I ACGT 4 cut(s) 303, 613, 1357, 1419
Hsp92I GRCGYC 2 cut(s) 156, 210
Hsp92II CATG 3 cut(s) 599, 785, 931
HspAI GCGC 1 cut(s) 248
Kpn2I TCCGGA 1 cut(s) 517
KspI CCGCGG 1 cut(s) 151
LmnI GCTCC 1 cut(s) 943
Lsp1109I GCAGC 2 cut(s) 619, 826
LweI GCATC 6 cut(s) 224, 229, 523, 715, 985, 1099
MaeI CTAG 1 cut(s) 711
MaeII ACGT 4 cut(s) 303, 613, 1357, 1419
MaeIII GTNAC 2 cut(s) 472, 1241
MboII GAAGA 5 cut(s) 65, 566, 802, 1037, 1065
MflI RGATCY 2 cut(s) 360, 996
MhlI GDGCHC 2 cut(s) 180, 702
MluCI AATT 4 cut(s) 415, 572, 855, 1002
MlyI GAGTC 1 cut(s) 1262
MmeI TCCRAC 1 cut(s) 610
Mph1103I ATGCAT 1 cut(s) 516
MroI TCCGGA 1 cut(s) 517
MslI CAYNNNNRTG 1 cut(s) 666
MspA1I CMGCKG 3 cut(s) 150, 839, 956
MspI CCGG 5 cut(s) 126, 312, 479, 518, 623
MspR9I CCNGG 1 cut(s) 126
MvnI CGCG 3 cut(s) 150, 248, 332
MwoI GCNNNNNNNGC 5 cut(s) 162, 271, 452, 461, 632
NciI CCSGG 1 cut(s) 126
NdeI CATATG 2 cut(s) 663, 1439
NlaIII CATG 3 cut(s) 599, 785, 931
NmeAIII GCCGAG 2 cut(s) 286, 472
NmuCI GTSAC 1 cut(s) 472
NotI GCGGCCGC 1 cut(s) 243
NsiI ATGCAT 1 cut(s) 516
NspI RCATGY 1 cut(s) 599
NspV TTCGAA 2 cut(s) 413, 570
PaeI GCATGC 1 cut(s) 599
PagI TCATGA 1 cut(s) 781
PcsI WCGNNNNNNNCGW 3 cut(s) 48, 54, 371
PfeI GAWTC 9 cut(s) 315, 557, 671, 815, 863, 1133, 1283, 1322, 1400
PkrI GCNGC 8 cut(s) 152, 155, 244, 247, 454, 634, 841, 1062
PleI GAGTC 1 cut(s) 1262
PpsI GAGTC 1 cut(s) 1262
PshAI GACNNNNGTC 1 cut(s) 274
Psp124BI GAGCTC 1 cut(s) 180
PspFI CCCAGC 2 cut(s) 455, 1361
PsuI RGATCY 2 cut(s) 360, 996
PvuII CAGCTG 1 cut(s) 956
RsaI GTAC 1 cut(s) 835
RsaNI GTAC 1 cut(s) 834
RseI CAYNNNNRTG 1 cut(s) 666
SacI GAGCTC 1 cut(s) 180
SacII CCGCGG 1 cut(s) 151
SatI GCNGC 8 cut(s) 151, 154, 243, 246, 453, 633, 840, 1061
SchI GAGTC 1 cut(s) 1262
ScrFI CCNGG 1 cut(s) 126
SduI GDGCHC 2 cut(s) 180, 702
SfaNI GCATC 6 cut(s) 224, 229, 523, 715, 985, 1099
SfcI CTRYAG 1 cut(s) 1176
Sfr303I CCGCGG 1 cut(s) 151
SfuI TTCGAA 2 cut(s) 413, 570
SgrAI CRCCGGYG 1 cut(s) 622
SgrBI CCGCGG 1 cut(s) 151
SmiMI CAYNNNNRTG 1 cut(s) 666
SmlI CTYRAG 1 cut(s) 1211
SmoI CTYRAG 1 cut(s) 1211
SphI GCATGC 1 cut(s) 599
Sse9I AATT 4 cut(s) 415, 572, 855, 1002
SspMI CTAG 1 cut(s) 711
SstI GAGCTC 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 124
TaiI ACGT 4 cut(s) 306, 616, 1360, 1422
TaqI TCGA 5 cut(s) 42, 365, 374, 413, 570
TasI AATT 4 cut(s) 415, 572, 855, 1002
TauI GCSGC 6 cut(s) 153, 156, 245, 248, 455, 1063
TfiI GAWTC 9 cut(s) 315, 557, 671, 815, 863, 1133, 1283, 1322, 1400
TscAI CASTG 3 cut(s) 1041, 1062, 1210
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 2 cut(s) 632, 839
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 3 cut(s) 567, 1065, 1107
TspRI CASTG 3 cut(s) 1041, 1062, 1210
XapI RAATTY 1 cut(s) 415
XceI RCATGY 1 cut(s) 599
XmiI GTMKAC 1 cut(s) 743
XspI CTAG 1 cut(s) 711
Zsp2I ATGCAT 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.