MD02G1188800.v1.1

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0012324
Physical Location & Seq
Forward (+)
17253583 .. 17255888
2306 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1188800.v1.1.491

Sequence Viewer

Length: 1449 bp
ATGTCATGGCTGGCAAAATCCATCGCCAACTCACTCAAGCTCGACGACGACGACGACGACGATTACCACGGCCCAAACCCTAGCTCCAACAATGACAGAGACCCAAATTCAACCCGACCCGAATCCGGTTCACCATCAGCTCCCACCGTCAAAGGTGACATCTCCGAGCTCACCAATACCCTAACCCGCCAGTTCTGGGGCGTCGCATCCTTCCTCGCCCCGCCTCCTGATCCCACCACCCCTCCTGCTCCCAAAGCGTCCGACCCTGCCCATCCCTCCGATCCACCCTCCGACGAGGACGTGATCGCCGGAATCCGCAGCGACTTCGCGGAGATCGGCGGGAAGTTCAAGACCGGCATCTCGAAGCTGTCGAGTAACATAGGGGTTTCGGAGTTCACTAAGATCGCGTCGAATTTGCTGCAGTTTGGATCGGAAGAGGAAGCGGAGGCAGCTGGCGCTGCTCTTGGTGTGACCCAGGAAGTTCTTGCGTTCGTCAGGAATATCTCTTTGCATCCGGAGACTTGGCTCGATTTCCCCCTCTCCGATGACGACGAAGATTCAGATGATTTTGAATTGTCTGATGTTCAACAAGAGCATGCGCTGGCTGTTGAACGGCTTGCGCCATCGTTGGCTGCTCTCAGAATTGAACTGTGCCCTGAGCATATGAGTGAGGCTCACTTTTGGATGATTTACTTCGTGCTCTTGCATCCTAGACTCAGTAAACATGACGCCGAGCTTTTGTCTACACCCAAGATAGTGGAAGCTAGAGGCATGTTGTCTCATCAGCTGAAGAAGGGAACTAGTGATAAGCCAGAGACATACATTTCAGGAAGTGACGCTATTTATGCGAAAGGAGTTTCTGATTCCCCAAAAGAACACCATCTTTCTGTACCACCTAGTGCTGAATCTGACTTAGCACCTCCCAATACATCTACCACCAGATCAGCTCCTCTCCCACAGGCAGTTGATGTTGAGACAGACAAGCACCCGGTCCAGAGTAGTGAAATCCAAATTATTGACAAGCCTGTTATTGAGGAAGGACCTGTGAAGGAGACCAAATATCAGCTGCCACTCTCTAATTCTTCCTCTAAAGTCGTGGATGAGAAATATGAGGATGATGGTGATGATTGGTTGAAAGAGGAAACCTCAGAGATGGATGGTGTTGGTGGAACCTCCATCCCTATAGAGAATGATGAGGATGTATCATTCAGTGATCTTGAGGATGATGGAGATGTGCCATCAAGTTACAAGAAGGTCACATCTGGCTCTGATTCTTCGGCAAAAGACTCAAGAGATTGGGTTCAGCTTAGCAGAGCCTCTGCCGATTTGGATAGGGACAGCAACTCTGTTGAGATTAGACATTCTGGGTCTGGCCAGGTAAGTGCTCGTAAATTGGAGACCAAAGAATCGAATGACTGGCTTGACATTGAAGACATTGATGTTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

483

Amino Acids

52.37

Weight (kDa)

4.37

Isoelectric Point (pI)

46.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 186 - 243 4.1e-14 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65910
fragaria_vesca FvH4_1g18060
malus_domestica MD02G1188800.v1.1 MD15G1299800.v1.1
prunus_persica Prupe.6G217900_v2.0.a1 Prupe.6G217900_v2.0.a1
pyrus_communis pycom02g15320 pycom15g26230
rosa_chinensis RchiOBHm_Chr2g0108531
rosa_laevigata RLG00000017676
rosa_multiflora Rmu_co8465681.1_g000001 Rmu_sc0007574.1_g000012
rosa_roxburghii Rroxscaffold_2G00135050
rosa_rugosa Rorug02G0154100
rosa_samantha Rh2AG203000 Rh2BG216000 Rh2CG207000 Rh2DG210200
rosa_wichuraiana Rw2G016220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 743
AccII CGCG 2 cut(s) 329, 407
AccIII TCCGGA 1 cut(s) 514
AciI CCGC 6 cut(s) 187, 221, 316, 329, 339, 443
AclWI GGATC 3 cut(s) 224, 275, 436
AcoI YGGCCR 1 cut(s) 1372
AcsI RAATTY 2 cut(s) 106, 412
AcuI CTGAAG 1 cut(s) 809
AcyI GRCGYC 2 cut(s) 201, 729
AdeI CACNNNGTG 1 cut(s) 899
AfaI GTAC 1 cut(s) 891
AfiI CCNNNNNNNGG 2 cut(s) 125, 196
AgsI TTSAA 8 cut(s) 111, 349, 572, 587, 611, 647, 1135, 1430
AhlI ACTAGT 1 cut(s) 800
AjiI CACGTC 1 cut(s) 301
AjnI CCWGG 2 cut(s) 474, 1374
Alw21I GWGCWC 3 cut(s) 171, 702, 1387
Alw26I GTCTC 7 cut(s) 93, 512, 783, 809, 968, 1046, 1391
AlwI GGATC 3 cut(s) 224, 275, 436
Aor13HI TCCGGA 1 cut(s) 514
AoxI GGCC 2 cut(s) 70, 1372
ApeKI GCWGC 6 cut(s) 318, 418, 449, 458, 632, 1066
ApoI RAATTY 2 cut(s) 106, 412
AspLEI GCGC 3 cut(s) 458, 601, 622
AspS9I GGNCC 3 cut(s) 71, 991, 1040
AsuC2I CCSGG 1 cut(s) 989
AsuHPI GGTGA 4 cut(s) 123, 163, 167, 1133
AvaII GGWCC 2 cut(s) 991, 1040
BaeGI GKGCMC 1 cut(s) 656
BalI TGGCCA 1 cut(s) 1374
BanII GRGCYC 1 cut(s) 171
BbsI GAAGAC 1 cut(s) 1437
Bbv12I GWGCWC 3 cut(s) 171, 702, 1387
BbvI GCAGC 6 cut(s) 330, 405, 445, 461, 619, 1053
BceAI ACGGC 2 cut(s) 85, 629
BcgI CGANNNNNNTGC 4 cut(s) 307, 341, 400, 434
BciT130I CCWGG 2 cut(s) 476, 1376
BcnI CCSGG 1 cut(s) 989
BcoDI GTCTC 7 cut(s) 93, 512, 783, 809, 968, 1046, 1391
BcuI ACTAGT 1 cut(s) 800
BfaI CTAG 5 cut(s) 81, 711, 765, 801, 897
BfmI CTRYAG 2 cut(s) 419, 1182
BfoI RGCGCY 1 cut(s) 459
BisI GCNGC 6 cut(s) 319, 419, 450, 459, 633, 1067
BlpI GCTNAGC 1 cut(s) 1307
BlsI GCNGC 6 cut(s) 320, 420, 451, 460, 634, 1068
Bme1390I CCNGG 3 cut(s) 476, 989, 1376
Bme18I GGWCC 2 cut(s) 991, 1040
BmgBI CACGTC 1 cut(s) 301
BmgT120I GGNCC 3 cut(s) 71, 991, 1040
BmiI GGNNCC 1 cut(s) 1171
BmrFI CCNGG 3 cut(s) 476, 989, 1376
BmsI GCATC 4 cut(s) 215, 366, 520, 715
BpiI GAAGAC 1 cut(s) 1437
BplI GAGNNNNNCTC 4 cut(s) 658, 690, 1130, 1162
Bpu10I CCTNAGC 1 cut(s) 657
Bpu1102I GCTNAGC 1 cut(s) 1307
BpuEI CTTGAG 3 cut(s) 20, 1238, 1273
BpuMI CCSGG 1 cut(s) 989
BsaHI GRCGYC 2 cut(s) 201, 729
BsaI GGTCTC 3 cut(s) 93, 1046, 1391
BsaJI CCNNGG 2 cut(s) 67, 474
BsaWI WCCGGW 2 cut(s) 125, 514
BsaXI ACNNNNNCTCC 4 cut(s) 68, 98, 226, 256
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 196
Bse118I RCCGGY 1 cut(s) 353
Bse1I ACTGG 2 cut(s) 190, 1421
BseAI TCCGGA 1 cut(s) 514
BseBI CCWGG 2 cut(s) 476, 1376
BseDI CCNNGG 2 cut(s) 67, 474
BseLI CCNNNNNNNGG 2 cut(s) 125, 196
BseMII CTCAG 4 cut(s) 648, 652, 730, 1161
BseNI ACTGG 2 cut(s) 190, 1421
BseRI GAGGAG 1 cut(s) 939
BseSI GKGCMC 1 cut(s) 656
BseXI GCAGC 6 cut(s) 330, 405, 445, 461, 619, 1053
Bsh1236I CGCG 2 cut(s) 329, 407
BshFI GGCC 2 cut(s) 72, 1374
BsiHKAI GWGCWC 3 cut(s) 171, 702, 1387
BsiSI CCGG 5 cut(s) 126, 309, 354, 515, 989
BslFI GGGAC 1 cut(s) 1349
BslI CCNNNNNNNGG 2 cut(s) 125, 196
BsmAI GTCTC 7 cut(s) 93, 512, 783, 809, 968, 1046, 1391
BsmFI GGGAC 1 cut(s) 1349
BsnI GGCC 2 cut(s) 72, 1374
Bso31I GGTCTC 3 cut(s) 93, 1046, 1391
Bsp1286I GDGCHC 4 cut(s) 171, 656, 702, 1387
Bsp13I TCCGGA 1 cut(s) 514
Bsp143I GATC 8 cut(s) 229, 280, 303, 333, 402, 428, 941, 1213
Bsp1720I GCTNAGC 1 cut(s) 1307
BspACI CCGC 6 cut(s) 187, 221, 316, 329, 339, 443
BspANI GGCC 2 cut(s) 72, 1374
BspCNI CTCAG 4 cut(s) 649, 651, 729, 1160
BspEI TCCGGA 1 cut(s) 514
BspFNI CGCG 2 cut(s) 329, 407
BspLI GGNNCC 1 cut(s) 1171
BspMAI CTGCAG 1 cut(s) 423
BspPI GGATC 3 cut(s) 224, 275, 436
BspTNI GGTCTC 3 cut(s) 93, 1046, 1391
BsrFI RCCGGY 1 cut(s) 353
BsrI ACTGG 2 cut(s) 190, 1421
BssAI RCCGGY 1 cut(s) 353
BssECI CCNNGG 2 cut(s) 67, 474
BssMI GATC 8 cut(s) 229, 280, 303, 333, 402, 428, 941, 1213
BssNI GRCGYC 2 cut(s) 201, 729
Bst2UI CCWGG 2 cut(s) 476, 1376
Bst4CI ACNGT 2 cut(s) 148, 651
Bst6I CTCTTC 1 cut(s) 429
BstACI GRCGYC 2 cut(s) 201, 729
BstC8I GCNNGC 5 cut(s) 12, 454, 597, 603, 618
BstDEI CTNAG 7 cut(s) 399, 638, 657, 716, 913, 1147, 1307
BstDSI CCRYGG 1 cut(s) 67
BstFNI CGCG 2 cut(s) 329, 407
BstH2I RGCGCY 1 cut(s) 459
BstHHI GCGC 3 cut(s) 458, 601, 622
BstKTI GATC 8 cut(s) 232, 283, 306, 336, 405, 431, 944, 1216
BstMAI GTCTC 7 cut(s) 93, 512, 783, 809, 968, 1046, 1391
BstMBI GATC 8 cut(s) 229, 280, 303, 333, 402, 428, 941, 1213
BstMWI GCNNNNNNNGC 5 cut(s) 254, 449, 455, 458, 845
BstNI CCWGG 2 cut(s) 476, 1376
BstNSI RCATGY 2 cut(s) 599, 775
BstSCI CCNGG 3 cut(s) 474, 987, 1374
BstSFI CTRYAG 2 cut(s) 419, 1182
BstSLI GKGCMC 1 cut(s) 656
BstUI CGCG 2 cut(s) 329, 407
BstV1I GCAGC 6 cut(s) 330, 405, 445, 461, 619, 1053
BstV2I GAAGAC 1 cut(s) 1437
BstXI CCANNNNNNTGG 1 cut(s) 757
BsuRI GGCC 2 cut(s) 72, 1374
BtgI CCRYGG 1 cut(s) 67
BtgZI GCGATG 1 cut(s) 7
BtrI CACGTC 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 1216
Cac8I GCNNGC 5 cut(s) 12, 454, 597, 603, 618
CfoI GCGC 3 cut(s) 458, 601, 622
Cfr10I RCCGGY 1 cut(s) 353
Cfr13I GGNCC 3 cut(s) 71, 991, 1040
CseI GACGC 5 cut(s) 190, 246, 396, 737, 845
Csp6I GTAC 1 cut(s) 890
CviAII CATG 4 cut(s) 6, 596, 725, 772
CviQI GTAC 1 cut(s) 890
DdeI CTNAG 7 cut(s) 399, 638, 657, 716, 913, 1147, 1307
DpnI GATC 8 cut(s) 231, 282, 305, 335, 404, 430, 943, 1215
DpnII GATC 8 cut(s) 229, 280, 303, 333, 402, 428, 941, 1213
DraIII CACNNNGTG 1 cut(s) 899
EaeI YGGCCR 1 cut(s) 1372
Eam1104I CTCTTC 1 cut(s) 429
EarI CTCTTC 1 cut(s) 429
Ecl136II GAGCTC 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 171
Eco31I GGTCTC 3 cut(s) 93, 1046, 1391
Eco47I GGWCC 2 cut(s) 991, 1040
Eco53kI GAGCTC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 809
EcoICRI GAGCTC 1 cut(s) 169
EcoO109I RGGNCCY 1 cut(s) 1040
EcoRII CCWGG 2 cut(s) 474, 1374
EcoT38I GRGCYC 1 cut(s) 171
FaeI CATG 4 cut(s) 9, 599, 728, 775
FaqI GGGAC 1 cut(s) 1349
FatI CATG 4 cut(s) 5, 595, 724, 771
FauI CCCGC 3 cut(s) 194, 228, 332
FauNDI CATATG 1 cut(s) 663
FblI GTMKAC 1 cut(s) 743
Fnu4HI GCNGC 6 cut(s) 319, 419, 450, 459, 633, 1067
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 6 cut(s) 319, 419, 450, 459, 633, 1067
FspBI CTAG 5 cut(s) 81, 711, 765, 801, 897
GlaI GCGC 3 cut(s) 457, 600, 621
GluI GCNGC 6 cut(s) 319, 419, 450, 459, 633, 1067
HaeII RGCGCY 1 cut(s) 459
HaeIII GGCC 2 cut(s) 72, 1374
HapII CCGG 5 cut(s) 126, 309, 354, 515, 989
HgaI GACGC 5 cut(s) 190, 246, 396, 737, 845
HhaI GCGC 3 cut(s) 458, 601, 622
Hin1I GRCGYC 2 cut(s) 201, 729
Hin1II CATG 4 cut(s) 9, 599, 728, 775
Hin6I GCGC 3 cut(s) 456, 599, 620
HinP1I GCGC 3 cut(s) 456, 599, 620
HinfI GANTC 9 cut(s) 122, 312, 557, 714, 863, 905, 1271, 1286, 1406
HpaII CCGG 5 cut(s) 126, 309, 354, 515, 989
HphI GGTGA 4 cut(s) 123, 163, 167, 1133
Hpy166II GTNNAC 4 cut(s) 131, 396, 722, 744
Hpy188III TCNNGA 9 cut(s) 227, 349, 361, 496, 515, 828, 994, 1217, 1290
Hpy8I GTNNAC 4 cut(s) 131, 396, 722, 744
HpyAV CCTTC 5 cut(s) 220, 787, 1031, 1042, 1246
HpyCH4III ACNGT 2 cut(s) 148, 651
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 3 cut(s) 421, 511, 706
HpyF10VI GCNNNNNNNGC 5 cut(s) 254, 449, 455, 458, 845
HpyF3I CTNAG 7 cut(s) 399, 638, 657, 716, 913, 1147, 1307
HpySE526I ACGT 1 cut(s) 300
Hsp92I GRCGYC 2 cut(s) 201, 729
Hsp92II CATG 4 cut(s) 9, 599, 728, 775
HspAI GCGC 3 cut(s) 456, 599, 620
Kpn2I TCCGGA 1 cut(s) 514
Kzo9I GATC 8 cut(s) 229, 280, 303, 333, 402, 428, 941, 1213
LmnI GCTCC 4 cut(s) 89, 145, 253, 952
Lsp1109I GCAGC 6 cut(s) 330, 405, 445, 461, 619, 1053
LweI GCATC 4 cut(s) 215, 366, 520, 715
MaeI CTAG 5 cut(s) 81, 711, 765, 801, 897
MaeII ACGT 1 cut(s) 300
MaeIII GTNAC 6 cut(s) 155, 374, 469, 833, 1244, 1255
MalI GATC 8 cut(s) 231, 282, 305, 335, 404, 430, 943, 1215
MboI GATC 8 cut(s) 229, 280, 303, 333, 402, 428, 941, 1213
MboII GAAGA 6 cut(s) 446, 566, 802, 1074, 1266, 1442
MhlI GDGCHC 4 cut(s) 171, 656, 702, 1387
MlsI TGGCCA 1 cut(s) 1374
MluCI AATT 7 cut(s) 106, 412, 572, 642, 1011, 1078, 1391
MluNI TGGCCA 1 cut(s) 1374
MlyI GAGTC 2 cut(s) 708, 1280
MmeI TCCRAC 3 cut(s) 111, 285, 315
Mox20I TGGCCA 1 cut(s) 1374
MroI TCCGGA 1 cut(s) 514
MscI TGGCCA 1 cut(s) 1374
MslI CAYNNNNRTG 1 cut(s) 666
Msp20I TGGCCA 1 cut(s) 1374
MspA1I CMGCKG 3 cut(s) 452, 787, 1066
MspI CCGG 5 cut(s) 126, 309, 354, 515, 989
MspR9I CCNGG 3 cut(s) 476, 989, 1376
MvaI CCWGG 2 cut(s) 476, 1376
MvnI CGCG 2 cut(s) 329, 407
MwoI GCNNNNNNNGC 5 cut(s) 254, 449, 455, 458, 845
NciI CCSGG 1 cut(s) 989
NdeI CATATG 1 cut(s) 663
NdeII GATC 8 cut(s) 229, 280, 303, 333, 402, 428, 941, 1213
NlaIII CATG 4 cut(s) 9, 599, 728, 775
NlaIV GGNNCC 1 cut(s) 1171
NmeAIII GCCGAG 1 cut(s) 757
NmuCI GTSAC 4 cut(s) 155, 469, 833, 1255
NspI RCATGY 2 cut(s) 599, 775
PaeI GCATGC 1 cut(s) 599
PcsI WCGNNNNNNNCGW 5 cut(s) 48, 51, 54, 57, 368
PfeI GAWTC 7 cut(s) 122, 312, 557, 863, 905, 1271, 1406
PkrI GCNGC 6 cut(s) 320, 420, 451, 460, 634, 1068
PleI GAGTC 2 cut(s) 708, 1280
PpsI GAGTC 2 cut(s) 708, 1280
PpuMI RGGWCCY 1 cut(s) 1040
Psp124BI GAGCTC 1 cut(s) 171
Psp5II RGGWCCY 1 cut(s) 1040
Psp6I CCWGG 2 cut(s) 474, 1374
PspGI CCWGG 2 cut(s) 474, 1374
PspN4I GGNNCC 1 cut(s) 1171
PspPI GGNCC 3 cut(s) 71, 991, 1040
PspPPI RGGWCCY 1 cut(s) 1040
PstI CTGCAG 1 cut(s) 423
PvuII CAGCTG 3 cut(s) 452, 787, 1066
RsaI GTAC 1 cut(s) 891
RsaNI GTAC 1 cut(s) 890
RseI CAYNNNNRTG 1 cut(s) 666
SacI GAGCTC 1 cut(s) 171
SatI GCNGC 6 cut(s) 319, 419, 450, 459, 633, 1067
Sau3AI GATC 8 cut(s) 229, 280, 303, 333, 402, 428, 941, 1213
Sau96I GGNCC 3 cut(s) 71, 991, 1040
SchI GAGTC 2 cut(s) 708, 1280
ScrFI CCNGG 3 cut(s) 476, 989, 1376
SduI GDGCHC 4 cut(s) 171, 656, 702, 1387
SfaNI GCATC 4 cut(s) 215, 366, 520, 715
SfcI CTRYAG 2 cut(s) 419, 1182
SinI GGWCC 2 cut(s) 991, 1040
SmiMI CAYNNNNRTG 1 cut(s) 666
SmlI CTYRAG 3 cut(s) 35, 1217, 1288
SmoI CTYRAG 3 cut(s) 35, 1217, 1288
SpeI ACTAGT 1 cut(s) 800
SphI GCATGC 1 cut(s) 599
Sse9I AATT 7 cut(s) 106, 412, 572, 642, 1011, 1078, 1391
SsiI CCGC 6 cut(s) 187, 221, 316, 329, 339, 443
SspMI CTAG 5 cut(s) 81, 711, 765, 801, 897
SstI GAGCTC 1 cut(s) 171
StyD4I CCNGG 3 cut(s) 474, 987, 1374
TaaI ACNGT 2 cut(s) 148, 651
TaiI ACGT 1 cut(s) 303
TaqI TCGA 6 cut(s) 42, 362, 371, 410, 528, 1409
TasI AATT 7 cut(s) 106, 412, 572, 642, 1011, 1078, 1391
TfiI GAWTC 7 cut(s) 122, 312, 557, 863, 905, 1271, 1406
TscAI CASTG 1 cut(s) 1216
TseFI GTSAC 4 cut(s) 155, 469, 833, 1255
TseI GCWGC 6 cut(s) 318, 418, 449, 458, 632, 1066
Tsp45I GTSAC 4 cut(s) 155, 469, 833, 1255
TspRI CASTG 1 cut(s) 1216
VpaK11BI GGWCC 2 cut(s) 991, 1040
XapI RAATTY 2 cut(s) 106, 412
XceI RCATGY 2 cut(s) 599, 775
XmiI GTMKAC 1 cut(s) 743
XspI CTAG 5 cut(s) 81, 711, 765, 801, 897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.