Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8465681.1

Orthogroup ID

OG0012324

Physical Location & Seq

Genomic Coordinates Reverse (-)

1157 .. 1873

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8465681.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atgatatctctgcagatagtagaagttagagcaatgttgtctcatgagttaaagaagggaaatatgtctaagcctgaatctgacccttcagcaagtagtgctgcttattcaaaaggaattactgattctcccaaagaacagcatctttctgtgccaccgagtgctcaatctgacataatgccacccgaaacatctaccatgagatcagctcctccgccagcaacagctgatattgagacagagaagcacccagtccagagtagtgaaatccaaattgttgacaagcctgttattgaagagagaccagtgaaagagaccaaacatccactgccaccctccacttcttcatctaaagtcttggacgagaaggatgaggatgatgctgatgattggttgaaagaggaatcagagatggatggggacggtgtcggtggaacctccatccctatagagaacgatgaggatgtatcattcagtgatcttgaggacgatgatggagatgtgccattaggttacaagaaggccacatctggctctgactcttcagccaaagattcaagagactgggttcagctaggcagaagctctcctgattcagataaggacatgaactctgttggaatcagacatgctgggtctgcgcaggtaagttcccgtaacccagagaccaaagaatctaatgactggcttgatgttgatgacattgatgttatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSD

Protein Analysis

238

Amino Acids

25.76

Weight (kDa)

4.32

Isoelectric Point (pI)

62.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65910
fragaria_vesca	FvH4_1g18060
malus_domestica	MD02G1188800.v1.1 MD15G1299800.v1.1
prunus_persica	Prupe.6G217900_v2.0.a1 Prupe.6G217900_v2.0.a1
pyrus_communis	pycom02g15320 pycom15g26230
rosa_chinensis	RchiOBHm_Chr2g0108531
rosa_laevigata	RLG00000017676
rosa_multiflora	Rmu_co8465681.1_g000001 Rmu_sc0007574.1_g000012
rosa_roxburghii	Rroxscaffold_2G00135050
rosa_rugosa	Rorug02G0154100
rosa_samantha	Rh2AG203000 Rh2BG216000 Rh2CG207000 Rh2DG210200
rosa_wichuraiana	Rw2G016220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	642
Acc36I	ACCTGC	1 cut(s)	634
AciI	CCGC	1 cut(s)	215
AcuI	CTGAAG	2 cut(s)	72, 528
AdeI	CACNNNGTG	1 cut(s)	161
AgsI	TTSAA	4 cut(s)	111, 296, 397, 558
AluBI	AGCT	4 cut(s)	209, 227, 574, 585
AluI	AGCT	4 cut(s)	209, 227, 574, 585
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	6 cut(s)	45, 230, 295, 308, 555, 659
AoxI	GGCC	1 cut(s)	522
ApeKI	GCWGC	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	643
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	4 cut(s)	406, 410, 449, 488
BcoDI	GTCTC	6 cut(s)	45, 230, 295, 308, 555, 659
BfaI	CTAG	1 cut(s)	575
BfmI	CTRYAG	2 cut(s)	11, 447
BfuAI	ACCTGC	1 cut(s)	634
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	436
BmrI	ACTGGG	2 cut(s)	245, 574
BmsI	GCATC	2 cut(s)	151, 370
BmuI	ACTGGG	2 cut(s)	245, 574
BplI	GAGNNNNNCTC	2 cut(s)	193, 225
BpuEI	CTTGAG	1 cut(s)	503
BsaI	GGTCTC	3 cut(s)	295, 308, 659
BsaXI	ACNNNNNCTCC	2 cut(s)	112, 142
Bse1I	ACTGG	4 cut(s)	251, 305, 569, 689
Bse3DI	GCAATG	1 cut(s)	39
BseGI	GGATG	6 cut(s)	322, 376, 382, 421, 441, 469
BseMI	GCAATG	1 cut(s)	39
BseNI	ACTGG	4 cut(s)	251, 305, 569, 689
BseRI	GAGGAG	1 cut(s)	201
BseXI	GCAGC	1 cut(s)	88
BseYI	CCCAGC	1 cut(s)	632
BshFI	GGCC	1 cut(s)	524
BsiHKAI	GWGCWC	1 cut(s)	166
BslFI	GGGAC	1 cut(s)	434
BsmAI	GTCTC	6 cut(s)	45, 230, 295, 308, 555, 659
BsmFI	GGGAC	1 cut(s)	434
BsnI	GGCC	1 cut(s)	524
Bso31I	GGTCTC	3 cut(s)	295, 308, 659
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	203, 478
BspACI	CCGC	1 cut(s)	215
BspANI	GGCC	1 cut(s)	524
BspHI	TCATGA	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	436
BspMAI	CTGCAG	1 cut(s)	15
BspMI	ACCTGC	1 cut(s)	634
BspTNI	GGTCTC	3 cut(s)	295, 308, 659
BsrDI	GCAATG	1 cut(s)	39
BsrI	ACTGG	4 cut(s)	251, 305, 569, 689
BssMI	GATC	2 cut(s)	203, 478
Bst4CI	ACNGT	1 cut(s)	425
Bst6I	CTCTTC	2 cut(s)	291, 547
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	1 cut(s)	69
BstF5I	GGATG	6 cut(s)	322, 376, 382, 421, 441, 469
BstHHI	GCGC	1 cut(s)	643
BstKTI	GATC	2 cut(s)	206, 481
BstMAI	GTCTC	6 cut(s)	45, 230, 295, 308, 555, 659
BstMBI	GATC	2 cut(s)	203, 478
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 638
BstNSI	RCATGY	1 cut(s)	632
BstSFI	CTRYAG	2 cut(s)	11, 447
BstV1I	GCAGC	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	524
BtsCI	GGATG	6 cut(s)	322, 376, 382, 421, 441, 469
BtsI	GCAGTG	1 cut(s)	326
BtsIMutI	CAGTG	3 cut(s)	312, 326, 481
BveI	ACCTGC	1 cut(s)	634
Cac8I	GCNNGC	1 cut(s)	219
CciI	TCATGA	1 cut(s)	43
CfoI	GCGC	1 cut(s)	643
CviAII	CATG	4 cut(s)	44, 199, 607, 629
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	2 cut(s)	205, 480
DpnII	GATC	2 cut(s)	203, 478
DraIII	CACNNNGTG	1 cut(s)	161
Eam1104I	CTCTTC	2 cut(s)	291, 547
EarI	CTCTTC	2 cut(s)	291, 547
EciI	GGCGGA	1 cut(s)	204
Eco31I	GGTCTC	3 cut(s)	295, 308, 659
Eco32I	GATATC	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	72, 528
EcoRV	GATATC	1 cut(s)	6
FaeI	CATG	4 cut(s)	47, 202, 610, 632
FaiI	YATR	9 cut(s)	45, 65, 176, 200, 449, 608, 630, 713, 715
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	4 cut(s)	43, 198, 606, 628
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	6 cut(s)	309, 383, 389, 428, 428, 476
Fsp4HI	GCNGC	1 cut(s)	102
FspBI	CTAG	1 cut(s)	575
FspI	TGCGCA	1 cut(s)	642
GlaI	GCGC	1 cut(s)	642
GluI	GCNGC	1 cut(s)	102
GsaI	CCCAGC	1 cut(s)	636
HaeIII	GGCC	1 cut(s)	524
HhaI	GCGC	1 cut(s)	643
Hin1II	CATG	4 cut(s)	47, 202, 610, 632
Hin6I	GCGC	1 cut(s)	641
HinP1I	GCGC	1 cut(s)	641
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	8 cut(s)	77, 125, 404, 539, 554, 593, 621, 674
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	6 cut(s)	82, 172, 409, 538, 598, 626
Hpy188III	TCNNGA	5 cut(s)	44, 256, 482, 558, 590
Hpy8I	GTNNAC	1 cut(s)	280
HpyAV	CCTTC	4 cut(s)	49, 96, 361, 514
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4V	TGCA	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 638
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	4 cut(s)	47, 202, 610, 632
HspAI	GCGC	1 cut(s)	641
Kzo9I	GATC	2 cut(s)	203, 478
LmnI	GCTCC	1 cut(s)	214
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	2 cut(s)	151, 370
MaeI	CTAG	1 cut(s)	575
MaeIII	GTNAC	2 cut(s)	512, 656
MalI	GATC	2 cut(s)	205, 480
MboI	GATC	2 cut(s)	203, 478
MboII	GAAGA	3 cut(s)	308, 336, 534
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	2 cut(s)	117, 273
MlyI	GAGTC	1 cut(s)	533
MmeI	TCCRAC	1 cut(s)	598
MnlI	CCTC	7 cut(s)	222, 346, 367, 394, 448, 454, 478
MseI	TTAA	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	227
MwoI	GCNNNNNNNGC	2 cut(s)	98, 638
NdeII	GATC	2 cut(s)	203, 478
NlaIII	CATG	4 cut(s)	47, 202, 610, 632
NlaIV	GGNNCC	1 cut(s)	436
NsbI	TGCGCA	1 cut(s)	642
NspI	RCATGY	1 cut(s)	632
PagI	TCATGA	1 cut(s)	43
PfeI	GAWTC	7 cut(s)	77, 125, 404, 554, 593, 621, 674
PflFI	GACNNNGTC	1 cut(s)	425
PkrI	GCNGC	1 cut(s)	103
PleI	GAGTC	1 cut(s)	533
PpsI	GAGTC	1 cut(s)	533
PspFI	CCCAGC	1 cut(s)	632
PspN4I	GGNNCC	1 cut(s)	436
PstI	CTGCAG	1 cut(s)	15
PsyI	GACNNNGTC	1 cut(s)	425
PvuII	CAGCTG	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	2 cut(s)	203, 478
SchI	GAGTC	1 cut(s)	533
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	7 cut(s)	211, 229, 440, 514, 576, 587, 648
SfaNI	GCATC	2 cut(s)	151, 370
SfcI	CTRYAG	2 cut(s)	11, 447
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	2 cut(s)	117, 273
SsiI	CCGC	1 cut(s)	215
SspMI	CTAG	1 cut(s)	575
TaaI	ACNGT	1 cut(s)	425
TasI	AATT	2 cut(s)	117, 273
TfiI	GAWTC	7 cut(s)	77, 125, 404, 554, 593, 621, 674
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TscAI	CASTG	3 cut(s)	312, 333, 481
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	2 cut(s)	336, 623
TspRI	CASTG	3 cut(s)	312, 333, 481
Tth111I	GACNNNGTC	1 cut(s)	425
XceI	RCATGY	1 cut(s)	632
XspI	CTAG	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.