AT5G66090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010478
Physical Location & Seq
Forward (+)
26425680 .. 26427172
1493 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G66090.1

Sequence Viewer

Length: 633 bp
ATGGCATCTGCTCACTCCATAGCCGCCGTTTCTGTTCTCGATGCGGCCTCCAAGCAAGCAACACTTCCTTCTTCTTCTTCTTCTTCCTCTGCGCTCTACCCTCTTTCTTCTCTTCGATCTAAACCTCGCCAGCAGCTTCTCTCCCTACGCAGTGTCGCTCTCAAAGGTCGAGTAAAGGCGCAGGCAAAAGAAGCAGAAGCTAGTCCAAGTCCAGTGGGAGTGGGAGACGCATTCAGTAATGTGAAGCATCTTCTCCTGCCGGTGATTGATCGGAATCCTTATCTTTCTGAAGGCACCAGACAGGCTGCTGCTACAACAACCAGCTTGGCAAAGAAGTATGGAGCTGATATCACAGTTGTAGTCATTGACGAAGAAAAGAGAGAATCATCTTCGGAGCATGAGACTCAAGTATCCAACATCCGGTGGCATTTGTCTGAAGGTGGGTTCGAGGAGTTCAAGCTGTTGGAGAGGCTTGGGGAAGGGAAAAAAGCGACGGCCATAATAGGAGAGGTGGCAGATGAGCTGAAGATGGAGCTGGTGGTGATGAGCATGGAAGCCATCCACTCTAAGTACATTGACGCCAATCTACTCGCTGAGTTCATCCCCTGCCCCGTCCTCCTCTTGCCCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

22.54

Weight (kDa)

6.23

Isoelectric Point (pI)

51.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66090
fragaria_vesca FvH4_1g11240 FvH4_1g11240 FvH4_1g11240 FvH4_1g11240 FvH4_1g11240 FvH4_1g11240
malus_domestica MD02G1124800.v1.1 MD15G1239000.v1.1
prunus_persica Prupe.7G173500_v2.0.a1
pyrus_communis pycom02g09750
rosa_chinensis RchiOBHm_Chr2g0098651
rosa_laevigata RLG00000016821
rosa_multiflora Rmu_sc0002776.1_g000021
rosa_roxburghii Rroxscaffold_2G00143810
rosa_rugosa Rorug02G0073900
rosa_samantha Rh2AG121700 Rh2BG125300 Rh2CG126300 Rh2DG127400
rosa_wichuraiana Rw0G004170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 293
AciI CCGC 2 cut(s) 24, 44
AcoI YGGCCR 1 cut(s) 495
AcuI CTGAAG 3 cut(s) 309, 456, 545
AcyI GRCGYC 1 cut(s) 579
AfaI GTAC 1 cut(s) 572
AfiI CCNNNNNNNGG 1 cut(s) 420
AgsI TTSAA 1 cut(s) 457
AluBI AGCT 7 cut(s) 136, 200, 324, 344, 460, 523, 535
AluI AGCT 7 cut(s) 136, 200, 324, 344, 460, 523, 535
Alw26I GTCTC 2 cut(s) 219, 395
AoxI GGCC 2 cut(s) 45, 495
ApeKI GCWGC 3 cut(s) 133, 305, 308
AspLEI GCGC 2 cut(s) 94, 181
AsuHPI GGTGA 2 cut(s) 274, 553
BaeI ACNNNNGTAYC 2 cut(s) 393, 426
BanI GGYRCC 1 cut(s) 293
BbvI GCAGC 3 cut(s) 145, 292, 295
BccI CCATC 2 cut(s) 523, 566
BceAI ACGGC 2 cut(s) 11, 510
BciVI GTATCC 1 cut(s) 421
BcoDI GTCTC 2 cut(s) 219, 395
BfaI CTAG 1 cut(s) 201
BfuI GTATCC 1 cut(s) 421
BisI GCNGC 5 cut(s) 24, 45, 134, 306, 309
BlsI GCNGC 5 cut(s) 25, 46, 135, 307, 310
BmiI GGNNCC 1 cut(s) 295
BmsI GCATC 3 cut(s) 14, 31, 256
BpuEI CTTGAG 1 cut(s) 390
BsaBI GATNNNNATC 1 cut(s) 273
BsaHI GRCGYC 1 cut(s) 579
BsaWI WCCGGW 1 cut(s) 420
Bsc4I CCNNNNNNNGG 1 cut(s) 420
Bse118I RCCGGY 1 cut(s) 259
Bse1I ACTGG 1 cut(s) 212
Bse8I GATNNNNATC 1 cut(s) 273
BseGI GGATG 3 cut(s) 417, 558, 600
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 420
BseMII CTCAG 1 cut(s) 585
BseNI ACTGG 1 cut(s) 212
BseRI GAGGAG 2 cut(s) 464, 608
BseXI GCAGC 3 cut(s) 145, 292, 295
BshFI GGCC 2 cut(s) 47, 497
BshNI GGYRCC 1 cut(s) 293
BsiSI CCGG 2 cut(s) 260, 421
BslI CCNNNNNNNGG 1 cut(s) 420
BsmAI GTCTC 2 cut(s) 219, 395
BsmBI CGTCTC 1 cut(s) 219
BsmI GAATGC 1 cut(s) 230
BsnI GGCC 2 cut(s) 47, 497
Bsp143I GATC 2 cut(s) 116, 268
BspACI CCGC 2 cut(s) 24, 44
BspANI GGCC 2 cut(s) 47, 497
BspCNI CTCAG 1 cut(s) 586
BspLI GGNNCC 1 cut(s) 295
BspT107I GGYRCC 1 cut(s) 293
BsrFI RCCGGY 1 cut(s) 259
BsrI ACTGG 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 259
BssMI GATC 2 cut(s) 116, 268
BssNI GRCGYC 1 cut(s) 579
Bst4CI ACNGT 1 cut(s) 355
Bst6I CTCTTC 1 cut(s) 117
BstACI GRCGYC 1 cut(s) 579
BstC8I GCNNGC 3 cut(s) 57, 131, 183
BstDEI CTNAG 2 cut(s) 567, 594
BstF5I GGATG 3 cut(s) 417, 558, 600
BstHHI GCGC 2 cut(s) 94, 181
BstKTI GATC 2 cut(s) 119, 271
BstMAI GTCTC 2 cut(s) 219, 395
BstMBI GATC 2 cut(s) 116, 268
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstV1I GCAGC 3 cut(s) 145, 292, 295
BsuI GTATCC 1 cut(s) 421
BsuRI GGCC 2 cut(s) 47, 497
BtsCI GGATG 3 cut(s) 417, 558, 600
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 2 cut(s) 157, 219
Cac8I GCNNGC 3 cut(s) 57, 131, 183
CfoI GCGC 2 cut(s) 94, 181
Cfr10I RCCGGY 1 cut(s) 259
CseI GACGC 2 cut(s) 236, 587
Csp6I GTAC 1 cut(s) 571
CspCI CAANNNNNGTGG 2 cut(s) 195, 230
CviAII CATG 2 cut(s) 398, 550
CviQI GTAC 1 cut(s) 571
DdeI CTNAG 2 cut(s) 567, 594
DpnI GATC 2 cut(s) 118, 270
DpnII GATC 2 cut(s) 116, 268
EaeI YGGCCR 1 cut(s) 495
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco32I GATATC 1 cut(s) 349
Eco57I CTGAAG 3 cut(s) 309, 456, 545
EcoRV GATATC 1 cut(s) 349
Esp3I CGTCTC 1 cut(s) 219
FaeI CATG 2 cut(s) 401, 553
FaiI YATR 5 cut(s) 20, 339, 399, 500, 551
FalI AAGNNNNNCTT 2 cut(s) 48, 80
FatI CATG 2 cut(s) 397, 549
Fnu4HI GCNGC 5 cut(s) 24, 45, 134, 306, 309
FokI GGATG 3 cut(s) 404, 545, 587
Fsp4HI GCNGC 5 cut(s) 24, 45, 134, 306, 309
FspBI CTAG 1 cut(s) 201
GlaI GCGC 2 cut(s) 93, 180
GluI GCNGC 5 cut(s) 24, 45, 134, 306, 309
HaeIII GGCC 2 cut(s) 47, 497
HapII CCGG 2 cut(s) 260, 421
HgaI GACGC 2 cut(s) 236, 587
HhaI GCGC 2 cut(s) 94, 181
Hin1I GRCGYC 1 cut(s) 579
Hin1II CATG 2 cut(s) 401, 553
Hin6I GCGC 2 cut(s) 92, 179
HinP1I GCGC 2 cut(s) 92, 179
HinfI GANTC 3 cut(s) 274, 383, 403
HpaII CCGG 2 cut(s) 260, 421
HphI GGTGA 2 cut(s) 274, 553
Hpy188I TCNGA 4 cut(s) 273, 289, 394, 436
Hpy188III TCNNGA 1 cut(s) 38
Hpy99I CGWCG 1 cut(s) 496
HpyAV CCTTC 4 cut(s) 78, 284, 431, 473
HpyCH4III ACNGT 1 cut(s) 355
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 2 cut(s) 567, 594
Hsp92I GRCGYC 1 cut(s) 579
Hsp92II CATG 2 cut(s) 401, 553
HspAI GCGC 2 cut(s) 92, 179
Kzo9I GATC 2 cut(s) 116, 268
LmnI GCTCC 3 cut(s) 341, 394, 532
Lsp1109I GCAGC 3 cut(s) 145, 292, 295
LweI GCATC 3 cut(s) 14, 31, 256
MaeI CTAG 1 cut(s) 201
MalI GATC 2 cut(s) 118, 270
MboI GATC 2 cut(s) 116, 268
MlyI GAGTC 1 cut(s) 397
MmeI TCCRAC 2 cut(s) 438, 444
MnlI CCTC 9 cut(s) 58, 97, 111, 135, 442, 462, 502, 626, 629
MspI CCGG 2 cut(s) 260, 421
Mva1269I GAATGC 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 2 cut(s) 116, 268
NlaIII CATG 2 cut(s) 401, 553
NlaIV GGNNCC 1 cut(s) 295
PctI GAATGC 1 cut(s) 230
PfeI GAWTC 2 cut(s) 274, 383
PkrI GCNGC 5 cut(s) 25, 46, 135, 307, 310
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
PspN4I GGNNCC 1 cut(s) 295
RsaI GTAC 1 cut(s) 572
RsaNI GTAC 1 cut(s) 571
SatI GCNGC 5 cut(s) 24, 45, 134, 306, 309
Sau3AI GATC 2 cut(s) 116, 268
SchI GAGTC 1 cut(s) 397
SfaNI GCATC 3 cut(s) 14, 31, 256
SmlI CTYRAG 1 cut(s) 405
SmoI CTYRAG 1 cut(s) 405
SsiI CCGC 2 cut(s) 24, 44
SspMI CTAG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 355
TaqI TCGA 4 cut(s) 39, 115, 169, 447
TatI WGTACW 1 cut(s) 570
TauI GCSGC 2 cut(s) 26, 47
TfiI GAWTC 2 cut(s) 274, 383
TscAI CASTG 2 cut(s) 157, 219
TseI GCWGC 3 cut(s) 133, 305, 308
TspDTI ATGAA 1 cut(s) 589
TspRI CASTG 2 cut(s) 157, 219
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.