MD02G1124800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0010478
Physical Location & Seq
Forward (+)
10156394 .. 10158635
2242 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1124800.v1.1.491

Sequence Viewer

Length: 642 bp
ATGGCATTTGCTCACTACCCAACATCCATTCGCCTCCAAGCCTCAAAGCACCCAAAGACTTCGATTCTGAAACCACCACCTCCTTCTCCTTCCTTTTCCTCCCTTCCTCTTCCCCTCAAACCTCGGAACCTCTCCTTATTTTCAAGGCCCCGAATTCCGGGGCATAAGGGTAATTACACTTCTCCGCCGTCGGCGCAGGCGGAGCCGCAGGGGCCTCAGGTGAGTTCAGCTGCGGACGCCTTCACTAACTTCAAGCATCTGCTGCTGCCCATCACCGACGGGAACCCATATCTCTCCGAGGGCACAAGACAGGCCATAGCTACGGTTGCTGCTTTGGCGAAGAAGTATGGGTCTGACATTACGGTTGTGGTGATCGATGATCAGCAGAAGGAGTCGTTGCCGGAACACGAAACCCAGCTTTCGACTATCCGTTGGCATCTCTCCGAAGGTGGGTTCCAAGAATACAAGCTGTTAGAGCGACTCGGGGAAGGGAACAAGCCGACAGCCATCATCGGCGAGGTTGCTGATGACCTGAATTTGGATTTAGTTGTTATAAGCATGGAAGCTATTCACTCCAAGCATATCGATGCAAACCTGCTTGCTGAGTTCATTCCTTGCCCTGTCATCCTTTTGCCGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

23.21

Weight (kDa)

6.44

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66090
fragaria_vesca FvH4_1g11240 FvH4_1g11240 FvH4_1g11240 FvH4_1g11240 FvH4_1g11240 FvH4_1g11240
malus_domestica MD02G1124800.v1.1 MD15G1239000.v1.1
prunus_persica Prupe.7G173500_v2.0.a1
pyrus_communis pycom02g09750
rosa_chinensis RchiOBHm_Chr2g0098651
rosa_laevigata RLG00000016821
rosa_multiflora Rmu_sc0002776.1_g000021
rosa_roxburghii Rroxscaffold_2G00143810
rosa_rugosa Rorug02G0073900
rosa_samantha Rh2AG121700 Rh2BG125300 Rh2CG126300 Rh2DG127400
rosa_wichuraiana Rw0G004170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 554, 640
Acc36I ACCTGC 1 cut(s) 603
AciI CCGC 4 cut(s) 185, 200, 206, 233
AcsI RAATTY 2 cut(s) 153, 535
AcyI GRCGYC 1 cut(s) 237
AfiI CCNNNNNNNGG 3 cut(s) 157, 450, 538
AgsI TTSAA 2 cut(s) 144, 253
AluBI AGCT 5 cut(s) 230, 320, 418, 469, 566
AluI AGCT 5 cut(s) 230, 320, 418, 469, 566
Ama87I CYCGRG 1 cut(s) 482
AoxI GGCC 3 cut(s) 146, 212, 312
ApeKI GCWGC 4 cut(s) 230, 262, 265, 329
ApoI RAATTY 2 cut(s) 153, 535
Asp700I GAANNNNTTC 1 cut(s) 567
AspLEI GCGC 1 cut(s) 196
AspS9I GGNCC 2 cut(s) 147, 212
AsuC2I CCSGG 1 cut(s) 159
AsuHPI GGTGA 3 cut(s) 232, 265, 382
AvaI CYCGRG 1 cut(s) 482
AxyI CCTNAGG 1 cut(s) 216
BaeGI GKGCMC 1 cut(s) 305
BarI GAAGNNNNNNTAC 2 cut(s) 163, 195
BbvI GCAGC 4 cut(s) 217, 249, 252, 316
BccI CCATC 2 cut(s) 278, 515
BceAI ACGGC 2 cut(s) 172, 619
BclI TGATCA 1 cut(s) 379
BcnI CCSGG 1 cut(s) 159
BfuAI ACCTGC 1 cut(s) 603
BglI GCCNNNNNGGC 1 cut(s) 211
BisI GCNGC 5 cut(s) 206, 231, 263, 266, 330
BlsI GCNGC 5 cut(s) 207, 232, 264, 267, 331
Bme1390I CCNGG 1 cut(s) 159
BmeT110I CYCGRG 1 cut(s) 482
BmgT120I GGNCC 2 cut(s) 147, 212
BmiI GGNNCC 6 cut(s) 128, 149, 204, 213, 284, 455
BmrFI CCNGG 1 cut(s) 159
BmsI GCATC 3 cut(s) 265, 445, 577
BpuMI CCSGG 1 cut(s) 159
Bsa29I ATCGAT 2 cut(s) 375, 585
BsaHI GRCGYC 1 cut(s) 237
BsaJI CCNNGG 3 cut(s) 122, 158, 297
Bsc4I CCNNNNNNNGG 3 cut(s) 157, 450, 538
Bse21I CCTNAGG 1 cut(s) 216
BseCI ATCGAT 2 cut(s) 375, 585
BseDI CCNNGG 3 cut(s) 122, 158, 297
BseGI GGATG 2 cut(s) 23, 624
BseLI CCNNNNNNNGG 3 cut(s) 157, 450, 538
BseMII CTCAG 2 cut(s) 230, 594
BseSI GKGCMC 1 cut(s) 305
BseXI GCAGC 4 cut(s) 217, 249, 252, 316
BseYI CCCAGC 1 cut(s) 414
BshFI GGCC 3 cut(s) 148, 214, 314
BshVI ATCGAT 2 cut(s) 375, 585
BsiHKCI CYCGRG 1 cut(s) 482
BsiSI CCGG 2 cut(s) 158, 401
BslI CCNNNNNNNGG 3 cut(s) 157, 450, 538
BsnI GGCC 3 cut(s) 148, 214, 314
BsoBI CYCGRG 1 cut(s) 482
Bsp1286I GDGCHC 1 cut(s) 305
Bsp143I GATC 2 cut(s) 372, 379
BspACI CCGC 4 cut(s) 185, 200, 206, 233
BspANI GGCC 3 cut(s) 148, 214, 314
BspCNI CTCAG 2 cut(s) 229, 595
BspDI ATCGAT 2 cut(s) 375, 585
BspLI GGNNCC 6 cut(s) 128, 149, 204, 213, 284, 455
BspMI ACCTGC 1 cut(s) 603
BssECI CCNNGG 3 cut(s) 122, 158, 297
BssMI GATC 2 cut(s) 372, 379
BssNI GRCGYC 1 cut(s) 237
Bst4CI ACNGT 2 cut(s) 325, 364
Bst6I CTCTTC 1 cut(s) 114
BstACI GRCGYC 1 cut(s) 237
BstAPI GCANNNNNTGC 1 cut(s) 262
BstC8I GCNNGC 2 cut(s) 198, 600
BstDEI CTNAG 2 cut(s) 216, 603
BstF5I GGATG 2 cut(s) 23, 624
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 2 cut(s) 375, 382
BstMBI GATC 2 cut(s) 372, 379
BstMWI GCNNNNNNNGC 8 cut(s) 193, 202, 211, 236, 262, 326, 335, 475
BstSCI CCNGG 1 cut(s) 157
BstSLI GKGCMC 1 cut(s) 305
BstV1I GCAGC 4 cut(s) 217, 249, 252, 316
Bsu15I ATCGAT 2 cut(s) 375, 585
Bsu36I CCTNAGG 1 cut(s) 216
BsuRI GGCC 3 cut(s) 148, 214, 314
BsuTUI ATCGAT 2 cut(s) 375, 585
BtsCI GGATG 2 cut(s) 23, 624
BveI ACCTGC 1 cut(s) 603
Cac8I GCNNGC 2 cut(s) 198, 600
CfoI GCGC 1 cut(s) 196
Cfr13I GGNCC 2 cut(s) 147, 212
ClaI ATCGAT 2 cut(s) 375, 585
CseI GACGC 1 cut(s) 245
CviAII CATG 1 cut(s) 559
DdeI CTNAG 2 cut(s) 216, 603
DpnI GATC 2 cut(s) 374, 381
DpnII GATC 2 cut(s) 372, 379
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
EciI GGCGGA 2 cut(s) 174, 215
Eco81I CCTNAGG 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 482
EcoO109I RGGNCCY 2 cut(s) 147, 212
EcoRI GAATTC 1 cut(s) 153
FaeI CATG 1 cut(s) 562
FaiI YATR 8 cut(s) 165, 289, 317, 348, 554, 560, 582, 640
FatI CATG 1 cut(s) 558
FbaI TGATCA 1 cut(s) 379
Fnu4HI GCNGC 5 cut(s) 206, 231, 263, 266, 330
FokI GGATG 2 cut(s) 10, 611
Fsp4HI GCNGC 5 cut(s) 206, 231, 263, 266, 330
GlaI GCGC 1 cut(s) 195
GluI GCNGC 5 cut(s) 206, 231, 263, 266, 330
GsaI CCCAGC 1 cut(s) 418
HaeIII GGCC 3 cut(s) 148, 214, 314
HapII CCGG 2 cut(s) 158, 401
HgaI GACGC 1 cut(s) 245
HhaI GCGC 1 cut(s) 196
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 1 cut(s) 562
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HinfI GANTC 3 cut(s) 64, 392, 480
HpaII CCGG 2 cut(s) 158, 401
HphI GGTGA 3 cut(s) 232, 265, 382
Hpy188I TCNGA 5 cut(s) 69, 126, 298, 355, 445
Hpy99I CGWCG 2 cut(s) 193, 281
HpyAV CCTTC 7 cut(s) 93, 99, 113, 250, 382, 440, 482
HpyCH4III ACNGT 2 cut(s) 325, 364
HpyCH4V TGCA 1 cut(s) 590
HpyF10VI GCNNNNNNNGC 8 cut(s) 193, 202, 211, 236, 262, 326, 335, 475
HpyF3I CTNAG 2 cut(s) 216, 603
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 1 cut(s) 562
HspAI GCGC 1 cut(s) 194
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 2 cut(s) 372, 379
LmnI GCTCC 1 cut(s) 202
Lsp1109I GCAGC 4 cut(s) 217, 249, 252, 316
LweI GCATC 3 cut(s) 265, 445, 577
MalI GATC 2 cut(s) 374, 381
MboI GATC 2 cut(s) 372, 379
MboII GAAGA 2 cut(s) 101, 352
MhlI GDGCHC 1 cut(s) 305
MluCI AATT 3 cut(s) 153, 172, 535
MlyI GAGTC 2 cut(s) 401, 474
MroXI GAANNNNTTC 1 cut(s) 567
MslI CAYNNNNRTG 1 cut(s) 585
MspA1I CMGCKG 1 cut(s) 230
MspI CCGG 2 cut(s) 158, 401
MspR9I CCNGG 1 cut(s) 159
MwoI GCNNNNNNNGC 8 cut(s) 193, 202, 211, 236, 262, 326, 335, 475
NciI CCSGG 1 cut(s) 159
NdeII GATC 2 cut(s) 372, 379
NlaIII CATG 1 cut(s) 562
NlaIV GGNNCC 6 cut(s) 128, 149, 204, 213, 284, 455
PdmI GAANNNNTTC 1 cut(s) 567
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 5 cut(s) 207, 232, 264, 267, 331
PleI GAGTC 2 cut(s) 400, 474
PpsI GAGTC 2 cut(s) 400, 474
PsiI TTATAA 2 cut(s) 554, 640
PspFI CCCAGC 1 cut(s) 414
PspN4I GGNNCC 6 cut(s) 128, 149, 204, 213, 284, 455
PspPI GGNCC 2 cut(s) 147, 212
PvuII CAGCTG 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 585
SatI GCNGC 5 cut(s) 206, 231, 263, 266, 330
Sau3AI GATC 2 cut(s) 372, 379
Sau96I GGNCC 2 cut(s) 147, 212
SchI GAGTC 2 cut(s) 401, 474
ScrFI CCNGG 1 cut(s) 159
SduI GDGCHC 1 cut(s) 305
SfaNI GCATC 3 cut(s) 265, 445, 577
SmiMI CAYNNNNRTG 1 cut(s) 585
Sse9I AATT 3 cut(s) 153, 172, 535
SsiI CCGC 4 cut(s) 185, 200, 206, 233
StyD4I CCNGG 1 cut(s) 157
TaaI ACNGT 2 cut(s) 325, 364
TaqI TCGA 4 cut(s) 62, 375, 422, 585
TasI AATT 3 cut(s) 153, 172, 535
TauI GCSGC 1 cut(s) 208
TfiI GAWTC 1 cut(s) 64
TseI GCWGC 4 cut(s) 230, 262, 265, 329
TspDTI ATGAA 1 cut(s) 598
TspGWI ACGGA 1 cut(s) 419
XapI RAATTY 2 cut(s) 153, 535
XmnI GAANNNNTTC 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.