Rroxscaffold_2G00143810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0010478
Physical Location & Seq
Reverse (-)
81771446 .. 81773246
1801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00143810.1

Sequence Viewer

Length: 642 bp
ATGGCGCTTGCTCACTACTCGGTCGCCGTTCCCATCGAAGCCTCGAAGCATCGGAAGACTTCGATCCCGAAACCTTCTTCGTCTTCTGAGTCTCACTCTTCACTCTTCTTCTCCTCCGTTTCCAAACCTCGAAGCGTTTCAATCTGTTCCGGAATCGGACGTAAAGTCAATCACTTTCATGCTCCGTCGGCTCAGGCCGAGCCTCAGGAGTCTCCGGCCAGTTTGGCCGCGGAGGCCTTCACTCAGTTCAAGCATGTGCTTTTGCCGATCACCGATCGCAATCCCTATCTCTCTGAAGGAACAAGACAGGCAATAGCTACTTCTGCTGCTCTGGCAAACAAGTATGGGGCTGACCTTACTGTTGTGGTTATTGATGAGAAGCAGAAGGAATCGATTCCCGAGCATGAAACGCAACTTTCGACTATCCGCTGGCATCTCTCTGAAGGTGGATTCCAAGAATTTAAGCTGTTAGAGCGACTTGGGGAAGGGGTCAACAAGCCAACAGCCATCATTGGTGAGGTTGCTGATGACCTGAATCTGGATTTAGTTGTCATAAGCATGGAAGCTATTCATTCCAAGCATGTGGATGCAAACCTGCTTGCTGAGTTCATTCCTTGCCCTGTCATTCTTTTGCCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

23.1

Weight (kDa)

6.05

Isoelectric Point (pI)

41.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66090
fragaria_vesca FvH4_1g11240 FvH4_1g11240 FvH4_1g11240 FvH4_1g11240 FvH4_1g11240 FvH4_1g11240
malus_domestica MD02G1124800.v1.1 MD15G1239000.v1.1
prunus_persica Prupe.7G173500_v2.0.a1
pyrus_communis pycom02g09750
rosa_chinensis RchiOBHm_Chr2g0098651
rosa_laevigata RLG00000016821
rosa_multiflora Rmu_sc0002776.1_g000021
rosa_roxburghii Rroxscaffold_2G00143810
rosa_rugosa Rorug02G0073900
rosa_samantha Rh2AG121700 Rh2BG125300 Rh2CG126300 Rh2DG127400
rosa_wichuraiana Rw0G004170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 603
AccII CGCG 1 cut(s) 230
AccIII TCCGGA 1 cut(s) 149
AciI CCGC 3 cut(s) 228, 230, 427
AclWI GGATC 1 cut(s) 58
AcoI YGGCCR 2 cut(s) 216, 225
AcsI RAATTY 1 cut(s) 458
AcuI CTGAAG 2 cut(s) 315, 462
AfiI CCNNNNNNNGG 1 cut(s) 538
AgsI TTSAA 2 cut(s) 141, 250
AhdI GACNNNNNGTC 1 cut(s) 164
AluBI AGCT 3 cut(s) 317, 466, 566
AluI AGCT 3 cut(s) 317, 466, 566
Alw26I GTCTC 2 cut(s) 96, 216
AlwI GGATC 1 cut(s) 58
Ama87I CYCGRG 1 cut(s) 398
Aor13HI TCCGGA 1 cut(s) 149
AoxI GGCC 4 cut(s) 195, 216, 225, 234
ApeKI GCWGC 1 cut(s) 326
ApoI RAATTY 1 cut(s) 458
Asp700I GAANNNNTTC 3 cut(s) 136, 393, 567
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 2 cut(s) 262, 527
AvaI CYCGRG 1 cut(s) 398
AxyI CCTNAGG 1 cut(s) 204
BbsI GAAGAC 2 cut(s) 62, 75
BbvI GCAGC 1 cut(s) 313
BccI CCATC 2 cut(s) 41, 515
BceAI ACGGC 1 cut(s) 11
BcoDI GTCTC 2 cut(s) 96, 216
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 603
BglI GCCNNNNNGGC 2 cut(s) 224, 233
BisI GCNGC 2 cut(s) 228, 327
BlsI GCNGC 2 cut(s) 229, 328
BmeRI GACNNNNNGTC 1 cut(s) 164
BmeT110I CYCGRG 1 cut(s) 398
BmsI GCATC 3 cut(s) 58, 442, 577
BpiI GAAGAC 2 cut(s) 62, 75
BplI GAGNNNNNCTC 2 cut(s) 80, 112
Bpu10I CCTNAGC 1 cut(s) 192
Bsa29I ATCGAT 1 cut(s) 392
BsaBI GATNNNNATC 1 cut(s) 279
BsaJI CCNNGG 1 cut(s) 228
BsaWI WCCGGW 1 cut(s) 149
Bsc4I CCNNNNNNNGG 1 cut(s) 538
Bse1I ACTGG 1 cut(s) 219
Bse21I CCTNAGG 1 cut(s) 204
Bse8I GATNNNNATC 1 cut(s) 279
BseAI TCCGGA 1 cut(s) 149
BseCI ATCGAT 1 cut(s) 392
BseDI CCNNGG 1 cut(s) 228
BseGI GGATG 1 cut(s) 592
BseJI GATNNNNATC 1 cut(s) 279
BseLI CCNNNNNNNGG 1 cut(s) 538
BseMII CTCAG 5 cut(s) 78, 206, 218, 257, 594
BseNI ACTGG 1 cut(s) 219
BseRI GAGGAG 1 cut(s) 103
BseXI GCAGC 1 cut(s) 313
Bsh1236I CGCG 1 cut(s) 230
Bsh1285I CGRYCG 2 cut(s) 24, 277
BshFI GGCC 4 cut(s) 197, 218, 227, 236
BshVI ATCGAT 1 cut(s) 392
BsiEI CGRYCG 2 cut(s) 24, 277
BsiHKCI CYCGRG 1 cut(s) 398
BsiSI CCGG 2 cut(s) 150, 215
BslI CCNNNNNNNGG 1 cut(s) 538
BsmAI GTCTC 2 cut(s) 96, 216
BsnI GGCC 4 cut(s) 197, 218, 227, 236
BsoBI CYCGRG 1 cut(s) 398
Bsp13I TCCGGA 1 cut(s) 149
Bsp143I GATC 3 cut(s) 63, 267, 274
BspACI CCGC 3 cut(s) 228, 230, 427
BspANI GGCC 4 cut(s) 197, 218, 227, 236
BspCNI CTCAG 5 cut(s) 79, 205, 217, 256, 595
BspDI ATCGAT 1 cut(s) 392
BspEI TCCGGA 1 cut(s) 149
BspFNI CGCG 1 cut(s) 230
BspMI ACCTGC 1 cut(s) 603
BspPI GGATC 1 cut(s) 58
BsrI ACTGG 1 cut(s) 219
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 3 cut(s) 63, 267, 274
Bst4CI ACNGT 1 cut(s) 361
Bst6I CTCTTC 2 cut(s) 103, 110
BstC8I GCNNGC 3 cut(s) 9, 431, 600
BstDEI CTNAG 5 cut(s) 87, 192, 204, 243, 603
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 592
BstFNI CGCG 1 cut(s) 230
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 66, 270, 277
BstMAI GTCTC 2 cut(s) 96, 216
BstMBI GATC 3 cut(s) 63, 267, 274
BstMCI CGRYCG 2 cut(s) 24, 277
BstMWI GCNNNNNNNGC 7 cut(s) 188, 224, 233, 323, 332, 409, 472
BstNSI RCATGY 2 cut(s) 257, 584
BstUI CGCG 1 cut(s) 230
BstV1I GCAGC 1 cut(s) 313
BstV2I GAAGAC 2 cut(s) 62, 75
BstXI CCANNNNNNTGG 1 cut(s) 583
Bsu15I ATCGAT 1 cut(s) 392
Bsu36I CCTNAGG 1 cut(s) 204
BsuRI GGCC 4 cut(s) 197, 218, 227, 236
BsuTUI ATCGAT 1 cut(s) 392
BtgI CCRYGG 1 cut(s) 228
BtsCI GGATG 1 cut(s) 592
BveI ACCTGC 1 cut(s) 603
Cac8I GCNNGC 3 cut(s) 9, 431, 600
CfoI GCGC 1 cut(s) 7
Cfr42I CCGCGG 1 cut(s) 231
ClaI ATCGAT 1 cut(s) 392
CviAII CATG 5 cut(s) 179, 254, 404, 559, 581
DdeI CTNAG 5 cut(s) 87, 192, 204, 243, 603
DpnI GATC 3 cut(s) 65, 269, 276
DpnII GATC 3 cut(s) 63, 267, 274
DriI GACNNNNNGTC 1 cut(s) 164
EaeI YGGCCR 2 cut(s) 216, 225
Eam1104I CTCTTC 2 cut(s) 103, 110
Eam1105I GACNNNNNGTC 1 cut(s) 164
EarI CTCTTC 2 cut(s) 103, 110
Eco147I AGGCCT 1 cut(s) 236
Eco57I CTGAAG 2 cut(s) 315, 462
Eco81I CCTNAGG 1 cut(s) 204
Eco88I CYCGRG 1 cut(s) 398
FaeI CATG 5 cut(s) 182, 257, 407, 562, 584
FaiI YATR 7 cut(s) 180, 255, 345, 405, 554, 560, 582
FatI CATG 5 cut(s) 178, 253, 403, 558, 580
Fnu4HI GCNGC 2 cut(s) 228, 327
FokI GGATG 1 cut(s) 599
Fsp4HI GCNGC 2 cut(s) 228, 327
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 228, 327
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 4 cut(s) 197, 218, 227, 236
HapII CCGG 2 cut(s) 150, 215
HhaI GCGC 1 cut(s) 7
Hin1II CATG 5 cut(s) 182, 257, 407, 562, 584
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 493
HindII GTYRAC 1 cut(s) 493
HinfI GANTC 7 cut(s) 89, 153, 209, 389, 394, 450, 535
HpaII CCGG 2 cut(s) 150, 215
HphI GGTGA 2 cut(s) 262, 527
Hpy166II GTNNAC 1 cut(s) 493
Hpy188I TCNGA 5 cut(s) 54, 88, 158, 295, 442
Hpy188III TCNNGA 5 cut(s) 67, 150, 206, 398, 539
Hpy8I GTNNAC 1 cut(s) 493
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 6 cut(s) 84, 247, 290, 379, 437, 479
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 590
HpyF10VI GCNNNNNNNGC 7 cut(s) 188, 224, 233, 323, 332, 409, 472
HpyF3I CTNAG 5 cut(s) 87, 192, 204, 243, 603
HpySE526I ACGT 1 cut(s) 160
Hsp92II CATG 5 cut(s) 182, 257, 407, 562, 584
HspAI GCGC 1 cut(s) 5
Kpn2I TCCGGA 1 cut(s) 149
KspI CCGCGG 1 cut(s) 231
Kzo9I GATC 3 cut(s) 63, 267, 274
LmnI GCTCC 1 cut(s) 187
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 3 cut(s) 58, 442, 577
MaeII ACGT 1 cut(s) 160
MalI GATC 3 cut(s) 65, 269, 276
MboI GATC 3 cut(s) 63, 267, 274
MboII GAAGA 6 cut(s) 67, 69, 75, 90, 97, 100
MluCI AATT 1 cut(s) 458
MlyI GAGTC 2 cut(s) 98, 218
MnlI CCTC 6 cut(s) 52, 124, 138, 213, 226, 511
MroI TCCGGA 1 cut(s) 149
MroXI GAANNNNTTC 3 cut(s) 136, 393, 567
MseI TTAA 1 cut(s) 462
MslI CAYNNNNRTG 3 cut(s) 177, 557, 585
MspA1I CMGCKG 2 cut(s) 230, 429
MspI CCGG 2 cut(s) 150, 215
MvnI CGCG 1 cut(s) 230
MwoI GCNNNNNNNGC 7 cut(s) 188, 224, 233, 323, 332, 409, 472
NdeII GATC 3 cut(s) 63, 267, 274
NlaIII CATG 5 cut(s) 182, 257, 407, 562, 584
NmeAIII GCCGAG 1 cut(s) 223
NspI RCATGY 2 cut(s) 257, 584
PceI AGGCCT 1 cut(s) 236
PcsI WCGNNNNNNNCGW 1 cut(s) 416
PdmI GAANNNNTTC 3 cut(s) 136, 393, 567
PfeI GAWTC 5 cut(s) 153, 389, 394, 450, 535
PkrI GCNGC 2 cut(s) 229, 328
Ple19I CGATCG 1 cut(s) 277
PleI GAGTC 2 cut(s) 97, 217
PpsI GAGTC 2 cut(s) 97, 217
PvuI CGATCG 1 cut(s) 277
RseI CAYNNNNRTG 3 cut(s) 177, 557, 585
SacII CCGCGG 1 cut(s) 231
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 2 cut(s) 228, 327
Sau3AI GATC 3 cut(s) 63, 267, 274
SchI GAGTC 2 cut(s) 98, 218
SfaNI GCATC 3 cut(s) 58, 442, 577
SfiI GGCCNNNNNGGCC 2 cut(s) 224, 233
Sfr303I CCGCGG 1 cut(s) 231
SgrBI CCGCGG 1 cut(s) 231
SmiMI CAYNNNNRTG 3 cut(s) 177, 557, 585
Sse9I AATT 1 cut(s) 458
SseBI AGGCCT 1 cut(s) 236
SsiI CCGC 3 cut(s) 228, 230, 427
StuI AGGCCT 1 cut(s) 236
TaaI ACNGT 1 cut(s) 361
TaiI ACGT 1 cut(s) 163
TaqI TCGA 6 cut(s) 36, 44, 62, 130, 392, 419
TaqII GACCGA 1 cut(s) 10
TasI AATT 1 cut(s) 458
TauI GCSGC 1 cut(s) 230
TfiI GAWTC 5 cut(s) 153, 389, 394, 450, 535
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TseI GCWGC 1 cut(s) 326
TspDTI ATGAA 4 cut(s) 167, 420, 560, 598
TspGWI ACGGA 2 cut(s) 106, 174
XapI RAATTY 1 cut(s) 458
XceI RCATGY 2 cut(s) 257, 584
XmnI GAANNNNTTC 3 cut(s) 136, 393, 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.