Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0010478

Physical Location & Seq

Genomic Coordinates Reverse (-)

17386428 .. 17388484

Gene Structure 2057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G173500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCTTTTGCTCACTACCCAGTAACCATTCCTGTCGAAACCACAAAGCACGCAAAGACTTCGATTCTGAAACCACCTTCTTCTTCTGAGTCTCTCTCTCTTTCTCTTCCTCCTCCTCTCAAACCTCGCAATCTCTCCATATTTTCCGGATTCAGACGGCTGGGGCATAATGGTAAATACTTTCACTCTCCATCAGCACAGGCTGAGCCGCAAGAGCCTCAAGTCAGTACAGCTGCAGATGCCATTACCCATTTCAAGCATCTGCTTCTGCCCATCGTCGATGGGAACCCATATCTCTCCGAGGGAACAAGACAGGCTATAGCTACTGCTGCTGCTTTGGCAAACAAGTATGGAGCTGACATTACGGTTGTGGTTATCGATGAGAAGGAGAAGGAGTCTCTGCCGCAACATGAAACCCAACTTTCTACTATCCGCTGGCATCTCTCTGAAGGTGGGTTCAAAGAATACAAGCTGCTAGAGCGACTTGGGGAAGGGAACAAGCCGACAGCCATCATCGGCGAGGTTGCTGATGACCTGAATTTGGATTTAGTTGTTATAAGCATGGAAGCTATTCATTCCAAGCATGTTGATGCAAACCTGCTTGCAGAGTTCATTCCTTGCCCGGTCATCCTTTTGCCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

23.35

Weight (kDa)

6.05

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66090
fragaria_vesca	FvH4_1g11240 FvH4_1g11240 FvH4_1g11240 FvH4_1g11240 FvH4_1g11240 FvH4_1g11240
malus_domestica	MD02G1124800.v1.1 MD15G1239000.v1.1
prunus_persica	Prupe.7G173500_v2.0.a1
pyrus_communis	pycom02g09750
rosa_chinensis	RchiOBHm_Chr2g0098651
rosa_laevigata	RLG00000016821
rosa_multiflora	Rmu_sc0002776.1_g000021
rosa_roxburghii	Rroxscaffold_2G00143810
rosa_rugosa	Rorug02G0073900
rosa_samantha	Rh2AG121700 Rh2BG125300 Rh2CG126300 Rh2DG127400
rosa_wichuraiana	Rw0G004170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	557
Acc36I	ACCTGC	1 cut(s)	606
AccIII	TCCGGA	1 cut(s)	146
AciI	CCGC	3 cut(s)	209, 404, 433
AcsI	RAATTY	1 cut(s)	538
AcuI	CTGAAG	1 cut(s)	468
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	1 cut(s)	541
AgsI	TTSAA	2 cut(s)	256, 460
AluBI	AGCT	5 cut(s)	233, 323, 356, 472, 569
AluI	AGCT	5 cut(s)	233, 323, 356, 472, 569
Alw26I	GTCTC	2 cut(s)	96, 402
Aor13HI	TCCGGA	1 cut(s)	146
ApeKI	GCWGC	4 cut(s)	233, 329, 332, 472
ApoI	RAATTY	1 cut(s)	538
Asp700I	GAANNNNTTC	1 cut(s)	570
AsuC2I	CCSGG	1 cut(s)	623
BbvI	GCAGC	4 cut(s)	220, 316, 319, 459
BccI	CCATC	4 cut(s)	199, 275, 281, 518
BceAI	ACGGC	1 cut(s)	173
BcgI	CGANNNNNNTGC	2 cut(s)	42, 76
BcnI	CCSGG	1 cut(s)	623
BcoDI	GTCTC	2 cut(s)	96, 402
BfaI	CTAG	1 cut(s)	476
BfmI	CTRYAG	2 cut(s)	234, 318
BfuAI	ACCTGC	1 cut(s)	606
BisI	GCNGC	6 cut(s)	209, 234, 330, 333, 404, 473
BlpI	GCTNAGC	1 cut(s)	204
BlsI	GCNGC	6 cut(s)	210, 235, 331, 334, 405, 474
Bme1390I	CCNGG	1 cut(s)	623
BmiI	GGNNCC	1 cut(s)	287
BmrFI	CCNGG	1 cut(s)	623
BmrI	ACTGGG	1 cut(s)	14
BmsI	GCATC	4 cut(s)	229, 268, 448, 580
BmuI	ACTGGG	1 cut(s)	14
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
Bpu1102I	GCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	204
BpuMI	CCSGG	1 cut(s)	623
Bsa29I	ATCGAT	1 cut(s)	378
BsaJI	CCNNGG	1 cut(s)	300
BsaWI	WCCGGW	1 cut(s)	146
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bsc4I	CCNNNNNNNGG	1 cut(s)	541
Bse1I	ACTGG	1 cut(s)	20
BseAI	TCCGGA	1 cut(s)	146
BseCI	ATCGAT	1 cut(s)	378
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	1 cut(s)	627
BseLI	CCNNNNNNNGG	1 cut(s)	541
BseMII	CTCAG	2 cut(s)	78, 195
BseNI	ACTGG	1 cut(s)	20
BseRI	GAGGAG	2 cut(s)	102, 105
BseXI	GCAGC	4 cut(s)	220, 316, 319, 459
BseYI	CCCAGC	1 cut(s)	160
BshVI	ATCGAT	1 cut(s)	378
BsiSI	CCGG	2 cut(s)	147, 623
BslI	CCNNNNNNNGG	1 cut(s)	541
BsmAI	GTCTC	2 cut(s)	96, 402
Bsp13I	TCCGGA	1 cut(s)	146
Bsp1720I	GCTNAGC	1 cut(s)	204
BspACI	CCGC	3 cut(s)	209, 404, 433
BspCNI	CTCAG	2 cut(s)	79, 196
BspDI	ATCGAT	1 cut(s)	378
BspEI	TCCGGA	1 cut(s)	146
BspLI	GGNNCC	1 cut(s)	287
BspMAI	CTGCAG	1 cut(s)	238
BspMI	ACCTGC	1 cut(s)	606
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	1 cut(s)	111
BstC8I	GCNNGC	3 cut(s)	51, 437, 603
BstDEI	CTNAG	2 cut(s)	87, 204
BstF5I	GGATG	1 cut(s)	627
BstMAI	GTCTC	2 cut(s)	96, 402
BstMWI	GCNNNNNNNGC	5 cut(s)	214, 239, 329, 338, 478
BstNSI	RCATGY	1 cut(s)	587
BstSCI	CCNGG	1 cut(s)	621
BstSFI	CTRYAG	2 cut(s)	234, 318
BstV1I	GCAGC	4 cut(s)	220, 316, 319, 459
Bsu15I	ATCGAT	1 cut(s)	378
BsuTUI	ATCGAT	1 cut(s)	378
BtsCI	GGATG	1 cut(s)	627
BveI	ACCTGC	1 cut(s)	606
Cac8I	GCNNGC	3 cut(s)	51, 437, 603
ClaI	ATCGAT	1 cut(s)	378
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	3 cut(s)	410, 562, 584
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	2 cut(s)	87, 204
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco57I	CTGAAG	1 cut(s)	468
FaeI	CATG	3 cut(s)	413, 565, 587
FaiI	YATR	9 cut(s)	140, 168, 292, 320, 351, 411, 557, 563, 585
FatI	CATG	3 cut(s)	409, 561, 583
Fnu4HI	GCNGC	6 cut(s)	209, 234, 330, 333, 404, 473
FokI	GGATG	1 cut(s)	614
Fsp4HI	GCNGC	6 cut(s)	209, 234, 330, 333, 404, 473
FspBI	CTAG	1 cut(s)	476
GluI	GCNGC	6 cut(s)	209, 234, 330, 333, 404, 473
GsaI	CCCAGC	1 cut(s)	164
HapII	CCGG	2 cut(s)	147, 623
Hin1II	CATG	3 cut(s)	413, 565, 587
HinfI	GANTC	4 cut(s)	64, 89, 150, 395
HpaII	CCGG	2 cut(s)	147, 623
Hpy188I	TCNGA	5 cut(s)	69, 88, 155, 301, 448
Hpy188III	TCNNGA	1 cut(s)	147
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	5 cut(s)	87, 379, 385, 443, 485
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4V	TGCA	3 cut(s)	236, 593, 605
HpyF10VI	GCNNNNNNNGC	5 cut(s)	214, 239, 329, 338, 478
HpyF3I	CTNAG	2 cut(s)	87, 204
Hsp92II	CATG	3 cut(s)	413, 565, 587
Kpn2I	TCCGGA	1 cut(s)	146
LmnI	GCTCC	1 cut(s)	353
Lsp1109I	GCAGC	4 cut(s)	220, 316, 319, 459
LweI	GCATC	4 cut(s)	229, 268, 448, 580
MaeI	CTAG	1 cut(s)	476
MaeIII	GTNAC	1 cut(s)	22
MboII	GAAGA	3 cut(s)	72, 75, 98
MluCI	AATT	1 cut(s)	538
MlyI	GAGTC	2 cut(s)	98, 404
MnlI	CCTC	7 cut(s)	120, 123, 126, 135, 228, 295, 514
MroI	TCCGGA	1 cut(s)	146
MroXI	GAANNNNTTC	1 cut(s)	570
MslI	CAYNNNNRTG	1 cut(s)	588
MspA1I	CMGCKG	2 cut(s)	233, 435
MspI	CCGG	2 cut(s)	147, 623
MspR9I	CCNGG	1 cut(s)	623
MwoI	GCNNNNNNNGC	5 cut(s)	214, 239, 329, 338, 478
NciI	CCSGG	1 cut(s)	623
NlaIII	CATG	3 cut(s)	413, 565, 587
NlaIV	GGNNCC	1 cut(s)	287
NspI	RCATGY	1 cut(s)	587
PdmI	GAANNNNTTC	1 cut(s)	570
PfeI	GAWTC	2 cut(s)	64, 150
PkrI	GCNGC	6 cut(s)	210, 235, 331, 334, 405, 474
PleI	GAGTC	2 cut(s)	97, 403
PpsI	GAGTC	2 cut(s)	97, 403
PsiI	TTATAA	1 cut(s)	557
PspFI	CCCAGC	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	287
PstI	CTGCAG	1 cut(s)	238
PvuII	CAGCTG	1 cut(s)	233
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
RseI	CAYNNNNRTG	1 cut(s)	588
SatI	GCNGC	6 cut(s)	209, 234, 330, 333, 404, 473
SchI	GAGTC	2 cut(s)	98, 404
ScrFI	CCNGG	1 cut(s)	623
SfaNI	GCATC	4 cut(s)	229, 268, 448, 580
SfcI	CTRYAG	2 cut(s)	234, 318
SmiMI	CAYNNNNRTG	1 cut(s)	588
SmlI	CTYRAG	1 cut(s)	219
SmoI	CTYRAG	1 cut(s)	219
Sse9I	AATT	1 cut(s)	538
SsiI	CCGC	3 cut(s)	209, 404, 433
SspMI	CTAG	1 cut(s)	476
StyD4I	CCNGG	1 cut(s)	621
TaaI	ACNGT	1 cut(s)	367
TaqI	TCGA	4 cut(s)	36, 62, 279, 378
TasI	AATT	1 cut(s)	538
TatI	WGTACW	1 cut(s)	227
TauI	GCSGC	2 cut(s)	211, 406
TfiI	GAWTC	2 cut(s)	64, 150
TseI	GCWGC	4 cut(s)	233, 329, 332, 472
TspDTI	ATGAA	3 cut(s)	426, 563, 601
XapI	RAATTY	1 cut(s)	538
XceI	RCATGY	1 cut(s)	587
XmnI	GAANNNNTTC	1 cut(s)	570
XspI	CTAG	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.