FvH4_1g11240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0010478
Physical Location & Seq
Forward (+)
6131992 .. 6133915
1924 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11240.t4

Sequence Viewer

Length: 651 bp
ATGGCGCTTGCTCGCTACACCGTCGCGGTTCCTGTCGAATCCTTAAAGCAGGTTAAGACTTCGATTCTGAAACCATCTGCTTCTTCTTCTTCTTCCGACTCTCACTTTCCACTCTTCTTCTCCGCTCGCAAGCCTCGAAGCGTTTCAATCTCTTCCGGAATCGGACGTAGACTCAGCCACTTTCATGCTCCGGCTGCTCAGGCCGAGCCGCAGGAGTCTTCTCCGGCGAGTTTGGCCGCGGAGGCCTTCACTCATTTCAAGCACGTGCTTTTGCCGATCACCGATCGCAATCCCTATCTCTCCGAAGGAACAAGACAGGCTATAGCTACTTCTGCTGCTTTGGCGAACAAGTATGGGGCTGACATTACTGTTGTAGTTATTGATGAGAAGCAGAAGGAATCGATTCCGGAGCATGAAACGCAACTTTCGACCATCCGCTGGCATCTCTCCGAAGGTGGATTCCAAGAATTTAAGCTGTTAGAGCGACTTGGGGAAGGGGTCAACAAGCCAACAGCTATCATCGGTGAGGTTGCCGATGACCTGAATCTGGATGTAGTTGTCATAAGCATGGAAGCTATTCATTCCAAGCATGTGGATGCAAATCTGCTTGCTGAGTTCATTCCATGCCCTGTCATACTTTTGCCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

23.43

Weight (kDa)

6.13

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66090
fragaria_vesca FvH4_1g11240 FvH4_1g11240 FvH4_1g11240 FvH4_1g11240 FvH4_1g11240 FvH4_1g11240
malus_domestica MD02G1124800.v1.1 MD15G1239000.v1.1
prunus_persica Prupe.7G173500_v2.0.a1
pyrus_communis pycom02g09750
rosa_chinensis RchiOBHm_Chr2g0098651
rosa_laevigata RLG00000016821
rosa_multiflora Rmu_sc0002776.1_g000021
rosa_roxburghii Rroxscaffold_2G00143810
rosa_rugosa Rorug02G0073900
rosa_samantha Rh2AG121700 Rh2BG125300 Rh2CG126300 Rh2DG127400
rosa_wichuraiana Rw0G004170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 40
AccB7I CCANNNNNTGG 1 cut(s) 438
AccBSI CCGCTC 1 cut(s) 125
AccI GTMKAC 1 cut(s) 169
AccII CGCG 2 cut(s) 26, 239
AccIII TCCGGA 2 cut(s) 155, 406
AciI CCGC 6 cut(s) 26, 123, 209, 237, 239, 436
AcoI YGGCCR 1 cut(s) 234
AcsI RAATTY 1 cut(s) 467
AcvI CACGTG 1 cut(s) 265
AfiI CCNNNNNNNGG 2 cut(s) 438, 547
AgsI TTSAA 2 cut(s) 147, 259
AluBI AGCT 4 cut(s) 326, 475, 515, 575
AluI AGCT 4 cut(s) 326, 475, 515, 575
Aor13HI TCCGGA 2 cut(s) 155, 406
AoxI GGCC 3 cut(s) 201, 234, 243
ApeKI GCWGC 2 cut(s) 194, 335
ApoI RAATTY 1 cut(s) 467
Asp700I GAANNNNTTC 3 cut(s) 142, 402, 576
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 2 cut(s) 271, 536
BbrPI CACGTG 1 cut(s) 265
BbsI GAAGAC 1 cut(s) 210
BbvI GCAGC 2 cut(s) 181, 322
BccI CCATC 2 cut(s) 82, 440
BfmI CTRYAG 1 cut(s) 321
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 40
BglI GCCNNNNNGGC 1 cut(s) 242
BisI GCNGC 4 cut(s) 195, 209, 237, 336
BlsI GCNGC 4 cut(s) 196, 210, 238, 337
BmiI GGNNCC 1 cut(s) 30
BmsI GCATC 2 cut(s) 451, 586
BpiI GAAGAC 1 cut(s) 210
Bpu10I CCTNAGC 1 cut(s) 198
Bsa29I ATCGAT 1 cut(s) 401
BsaAI YACGTR 1 cut(s) 265
BsaBI GATNNNNATC 2 cut(s) 288, 600
BsaJI CCNNGG 1 cut(s) 237
BsaWI WCCGGW 2 cut(s) 155, 406
Bsc4I CCNNNNNNNGG 2 cut(s) 438, 547
Bse8I GATNNNNATC 2 cut(s) 288, 600
BseAI TCCGGA 2 cut(s) 155, 406
BseCI ATCGAT 1 cut(s) 401
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 3 cut(s) 432, 556, 601
BseJI GATNNNNATC 2 cut(s) 288, 600
BseLI CCNNNNNNNGG 2 cut(s) 438, 547
BseMII CTCAG 3 cut(s) 187, 212, 603
BseXI GCAGC 2 cut(s) 181, 322
Bsh1236I CGCG 2 cut(s) 26, 239
Bsh1285I CGRYCG 1 cut(s) 286
BshFI GGCC 3 cut(s) 203, 236, 245
BshVI ATCGAT 1 cut(s) 401
BsiEI CGRYCG 1 cut(s) 286
BsiSI CCGG 4 cut(s) 156, 191, 224, 407
BslI CCNNNNNNNGG 2 cut(s) 438, 547
BsnI GGCC 3 cut(s) 203, 236, 245
Bsp13I TCCGGA 2 cut(s) 155, 406
Bsp143I GATC 2 cut(s) 276, 283
BspACI CCGC 6 cut(s) 26, 123, 209, 237, 239, 436
BspANI GGCC 3 cut(s) 203, 236, 245
BspCNI CTCAG 3 cut(s) 186, 211, 604
BspDI ATCGAT 1 cut(s) 401
BspEI TCCGGA 2 cut(s) 155, 406
BspFNI CGCG 2 cut(s) 26, 239
BspLI GGNNCC 1 cut(s) 30
BspMI ACCTGC 1 cut(s) 40
BsrBI CCGCTC 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 2 cut(s) 276, 283
Bst4CI ACNGT 2 cut(s) 22, 370
Bst6I CTCTTC 2 cut(s) 119, 157
BstBAI YACGTR 1 cut(s) 265
BstC8I GCNNGC 6 cut(s) 9, 13, 127, 131, 440, 609
BstDEI CTNAG 3 cut(s) 173, 198, 612
BstDSI CCRYGG 1 cut(s) 237
BstF5I GGATG 3 cut(s) 432, 556, 601
BstFNI CGCG 2 cut(s) 26, 239
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 279, 286
BstMBI GATC 2 cut(s) 276, 283
BstMCI CGRYCG 1 cut(s) 286
BstMWI GCNNNNNNNGC 8 cut(s) 194, 200, 233, 242, 332, 341, 418, 481
BstNSI RCATGY 1 cut(s) 593
BstSFI CTRYAG 1 cut(s) 321
BstUI CGCG 2 cut(s) 26, 239
BstV1I GCAGC 2 cut(s) 181, 322
BstV2I GAAGAC 1 cut(s) 210
BstXI CCANNNNNNTGG 1 cut(s) 592
Bsu15I ATCGAT 1 cut(s) 401
BsuRI GGCC 3 cut(s) 203, 236, 245
BsuTUI ATCGAT 1 cut(s) 401
BtgI CCRYGG 1 cut(s) 237
BtsCI GGATG 3 cut(s) 432, 556, 601
BveI ACCTGC 1 cut(s) 40
Cac8I GCNNGC 6 cut(s) 9, 13, 127, 131, 440, 609
CfoI GCGC 1 cut(s) 7
Cfr42I CCGCGG 1 cut(s) 240
ClaI ATCGAT 1 cut(s) 401
CviAII CATG 5 cut(s) 185, 413, 568, 590, 624
DdeI CTNAG 3 cut(s) 173, 198, 612
DpnI GATC 2 cut(s) 278, 285
DpnII GATC 2 cut(s) 276, 283
EaeI YGGCCR 1 cut(s) 234
Eam1104I CTCTTC 2 cut(s) 119, 157
EarI CTCTTC 2 cut(s) 119, 157
Eco147I AGGCCT 1 cut(s) 245
Eco72I CACGTG 1 cut(s) 265
FaeI CATG 5 cut(s) 188, 416, 571, 593, 627
FaiI YATR 9 cut(s) 186, 323, 354, 414, 563, 569, 591, 625, 635
FatI CATG 5 cut(s) 184, 412, 567, 589, 623
FblI GTMKAC 1 cut(s) 169
Fnu4HI GCNGC 4 cut(s) 195, 209, 237, 336
FokI GGATG 3 cut(s) 419, 563, 608
Fsp4HI GCNGC 4 cut(s) 195, 209, 237, 336
GlaI GCGC 1 cut(s) 6
GluI GCNGC 4 cut(s) 195, 209, 237, 336
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 3 cut(s) 203, 236, 245
HapII CCGG 4 cut(s) 156, 191, 224, 407
HhaI GCGC 1 cut(s) 7
Hin1II CATG 5 cut(s) 188, 416, 571, 593, 627
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HpaII CCGG 4 cut(s) 156, 191, 224, 407
HphI GGTGA 2 cut(s) 271, 536
Hpy166II GTNNAC 2 cut(s) 170, 502
Hpy188I TCNGA 5 cut(s) 69, 97, 164, 304, 451
Hpy188III TCNNGA 3 cut(s) 156, 407, 548
Hpy8I GTNNAC 2 cut(s) 170, 502
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 5 cut(s) 256, 299, 388, 446, 488
HpyCH4III ACNGT 2 cut(s) 22, 370
HpyCH4IV ACGT 2 cut(s) 166, 264
HpyCH4V TGCA 1 cut(s) 599
HpyF10VI GCNNNNNNNGC 8 cut(s) 194, 200, 233, 242, 332, 341, 418, 481
HpyF3I CTNAG 3 cut(s) 173, 198, 612
HpySE526I ACGT 2 cut(s) 166, 264
Hsp92II CATG 5 cut(s) 188, 416, 571, 593, 627
HspAI GCGC 1 cut(s) 5
Kpn2I TCCGGA 2 cut(s) 155, 406
KspI CCGCGG 1 cut(s) 240
Kzo9I GATC 2 cut(s) 276, 283
LmnI GCTCC 2 cut(s) 193, 409
Lsp1109I GCAGC 2 cut(s) 181, 322
LweI GCATC 2 cut(s) 451, 586
MaeII ACGT 2 cut(s) 166, 264
MalI GATC 2 cut(s) 278, 285
MbiI CCGCTC 1 cut(s) 125
MboI GATC 2 cut(s) 276, 283
MboII GAAGA 8 cut(s) 75, 78, 81, 84, 106, 109, 144, 210
MluCI AATT 1 cut(s) 467
MlyI GAGTC 3 cut(s) 92, 165, 224
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 3 cut(s) 144, 235, 520
MroI TCCGGA 2 cut(s) 155, 406
MroXI GAANNNNTTC 3 cut(s) 142, 402, 576
MseI TTAA 3 cut(s) 44, 54, 471
MslI CAYNNNNRTG 3 cut(s) 183, 566, 594
MspA1I CMGCKG 2 cut(s) 239, 438
MspI CCGG 4 cut(s) 156, 191, 224, 407
MvnI CGCG 2 cut(s) 26, 239
MwoI GCNNNNNNNGC 8 cut(s) 194, 200, 233, 242, 332, 341, 418, 481
NdeII GATC 2 cut(s) 276, 283
NlaIII CATG 5 cut(s) 188, 416, 571, 593, 627
NlaIV GGNNCC 1 cut(s) 30
NmeAIII GCCGAG 1 cut(s) 229
NspI RCATGY 1 cut(s) 593
PceI AGGCCT 1 cut(s) 245
PcsI WCGNNNNNNNCGW 2 cut(s) 133, 425
PdmI GAANNNNTTC 3 cut(s) 142, 402, 576
PfeI GAWTC 7 cut(s) 38, 64, 159, 398, 403, 459, 544
PflMI CCANNNNNTGG 1 cut(s) 438
PkrI GCNGC 4 cut(s) 196, 210, 238, 337
Ple19I CGATCG 1 cut(s) 286
PleI GAGTC 3 cut(s) 92, 165, 223
PmaCI CACGTG 1 cut(s) 265
PmlI CACGTG 1 cut(s) 265
PpsI GAGTC 3 cut(s) 92, 165, 223
Ppu21I YACGTR 1 cut(s) 265
PspCI CACGTG 1 cut(s) 265
PspN4I GGNNCC 1 cut(s) 30
PvuI CGATCG 1 cut(s) 286
RseI CAYNNNNRTG 3 cut(s) 183, 566, 594
SacII CCGCGG 1 cut(s) 240
SaqAI TTAA 3 cut(s) 44, 54, 471
SatI GCNGC 4 cut(s) 195, 209, 237, 336
Sau3AI GATC 2 cut(s) 276, 283
SchI GAGTC 3 cut(s) 92, 165, 224
SfaNI GCATC 2 cut(s) 451, 586
SfcI CTRYAG 1 cut(s) 321
SfiI GGCCNNNNNGGCC 1 cut(s) 242
Sfr303I CCGCGG 1 cut(s) 240
SgrBI CCGCGG 1 cut(s) 240
SmiMI CAYNNNNRTG 3 cut(s) 183, 566, 594
Sse9I AATT 1 cut(s) 467
SseBI AGGCCT 1 cut(s) 245
SsiI CCGC 6 cut(s) 26, 123, 209, 237, 239, 436
StuI AGGCCT 1 cut(s) 245
TaaI ACNGT 2 cut(s) 22, 370
TaiI ACGT 2 cut(s) 169, 267
TaqI TCGA 5 cut(s) 36, 62, 136, 401, 428
TasI AATT 1 cut(s) 467
TauI GCSGC 2 cut(s) 211, 239
TfiI GAWTC 7 cut(s) 38, 64, 159, 398, 403, 459, 544
Tru1I TTAA 3 cut(s) 44, 54, 471
Tru9I TTAA 3 cut(s) 44, 54, 471
TseI GCWGC 2 cut(s) 194, 335
TspDTI ATGAA 4 cut(s) 173, 429, 569, 607
Van91I CCANNNNNTGG 1 cut(s) 438
XapI RAATTY 1 cut(s) 467
XceI RCATGY 1 cut(s) 593
XmiI GTMKAC 1 cut(s) 169
XmnI GAANNNNTTC 3 cut(s) 142, 402, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.