Rh2AG121700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0010478
Physical Location & Seq
Forward (+)
11036150 .. 11037894
1745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG121700.1

Sequence Viewer

Length: 633 bp
ATGGCGCTTGCTCACTACTCAGTCGCCGTTCCCATCGAAGCCTCGAAGCATCCGAAGACTTCGATCGTGAAACCTTCTGAGTCTCACTCTTCACTCTTCTTCTCCTCCGTTTCCAAACCTCGAAGCGTTTCAATCCGTTCCGGAATCGGACGTAAAGTCAATCACTTTCATGCTCCGTCGGCTCAGGCCGAGCCGCAGGAGTCTCCGGCCAGTTTGGCCGCGGAGGCCTTCACTCAGTTCAAGCATGTGCTTTTGCCGATCACCGATCGCAATCCCTATCTCTCTGAAGGAACAAGACAGGCAATAGCTACTTCTGCTGCTTTGGCAAACAAGTATGGGGCTGACCTTACTGTTGTGGTTATTGATGAGAAGCAGAAGGAATCGATTCCCGAGCATGAAACGCAACTTTCGACTATCCGCTGGCATCTCTCTGAAGGTGGATTCCAAGAATTTAAGCTGTTAGAGCGACTTGGGGAAGGGGTCAACAAGCCAACGGCCATCATCGGTGAGGTTGCTGATGACCTGAATCTGGATTTAGTTGTCATAAGCATGGAAGCTATTCATTCCAAGCATGTGGATGCAAACCTGCTTGCTGAGTTCATTCCTTGCCCTGTCATACTTTTGCCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

22.83

Weight (kDa)

6.05

Isoelectric Point (pI)

40.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66090
fragaria_vesca FvH4_1g11240 FvH4_1g11240 FvH4_1g11240 FvH4_1g11240 FvH4_1g11240 FvH4_1g11240
malus_domestica MD02G1124800.v1.1 MD15G1239000.v1.1
prunus_persica Prupe.7G173500_v2.0.a1
pyrus_communis pycom02g09750
rosa_chinensis RchiOBHm_Chr2g0098651
rosa_laevigata RLG00000016821
rosa_multiflora Rmu_sc0002776.1_g000021
rosa_roxburghii Rroxscaffold_2G00143810
rosa_rugosa Rorug02G0073900
rosa_samantha Rh2AG121700 Rh2BG125300 Rh2CG126300 Rh2DG127400
rosa_wichuraiana Rw0G004170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 594
AccII CGCG 1 cut(s) 221
AccIII TCCGGA 1 cut(s) 140
AciI CCGC 4 cut(s) 194, 219, 221, 418
AcoI YGGCCR 3 cut(s) 207, 216, 495
AcsI RAATTY 1 cut(s) 449
AcuI CTGAAG 2 cut(s) 306, 453
AfiI CCNNNNNNNGG 1 cut(s) 529
AgsI TTSAA 2 cut(s) 132, 241
AhdI GACNNNNNGTC 1 cut(s) 155
AluBI AGCT 3 cut(s) 308, 457, 557
AluI AGCT 3 cut(s) 308, 457, 557
Alw26I GTCTC 2 cut(s) 87, 207
Ama87I CYCGRG 1 cut(s) 389
Aor13HI TCCGGA 1 cut(s) 140
AoxI GGCC 5 cut(s) 186, 207, 216, 225, 495
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 1 cut(s) 449
Asp700I GAANNNNTTC 3 cut(s) 127, 384, 558
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 2 cut(s) 253, 518
AvaI CYCGRG 1 cut(s) 389
BbsI GAAGAC 1 cut(s) 62
BbvI GCAGC 1 cut(s) 304
BccI CCATC 2 cut(s) 41, 506
BceAI ACGGC 2 cut(s) 11, 510
BcoDI GTCTC 2 cut(s) 87, 207
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 594
BglI GCCNNNNNGGC 2 cut(s) 215, 224
BisI GCNGC 3 cut(s) 194, 219, 318
BlsI GCNGC 3 cut(s) 195, 220, 319
BmeRI GACNNNNNGTC 1 cut(s) 155
BmeT110I CYCGRG 1 cut(s) 389
BmsI GCATC 3 cut(s) 58, 433, 568
BpiI GAAGAC 1 cut(s) 62
BplI GAGNNNNNCTC 2 cut(s) 71, 103
Bpu10I CCTNAGC 1 cut(s) 183
Bsa29I ATCGAT 1 cut(s) 383
BsaBI GATNNNNATC 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 219
BsaWI WCCGGW 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 529
Bse1I ACTGG 1 cut(s) 210
Bse8I GATNNNNATC 1 cut(s) 270
BseAI TCCGGA 1 cut(s) 140
BseCI ATCGAT 1 cut(s) 383
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 2 cut(s) 49, 583
BseJI GATNNNNATC 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 529
BseMII CTCAG 5 cut(s) 33, 69, 197, 248, 585
BseNI ACTGG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 94
BseXI GCAGC 1 cut(s) 304
Bsh1236I CGCG 1 cut(s) 221
Bsh1285I CGRYCG 2 cut(s) 66, 268
BshFI GGCC 5 cut(s) 188, 209, 218, 227, 497
BshVI ATCGAT 1 cut(s) 383
BsiEI CGRYCG 2 cut(s) 66, 268
BsiHKCI CYCGRG 1 cut(s) 389
BsiSI CCGG 2 cut(s) 141, 206
BslI CCNNNNNNNGG 1 cut(s) 529
BsmAI GTCTC 2 cut(s) 87, 207
BsnI GGCC 5 cut(s) 188, 209, 218, 227, 497
BsoBI CYCGRG 1 cut(s) 389
Bsp13I TCCGGA 1 cut(s) 140
Bsp143I GATC 3 cut(s) 63, 258, 265
BspACI CCGC 4 cut(s) 194, 219, 221, 418
BspANI GGCC 5 cut(s) 188, 209, 218, 227, 497
BspCNI CTCAG 5 cut(s) 32, 70, 196, 247, 586
BspDI ATCGAT 1 cut(s) 383
BspEI TCCGGA 1 cut(s) 140
BspFNI CGCG 1 cut(s) 221
BspMI ACCTGC 1 cut(s) 594
BsrI ACTGG 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 3 cut(s) 63, 258, 265
Bst4CI ACNGT 1 cut(s) 352
Bst6I CTCTTC 2 cut(s) 94, 101
BstC8I GCNNGC 3 cut(s) 9, 422, 591
BstDEI CTNAG 5 cut(s) 19, 78, 183, 234, 594
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 2 cut(s) 49, 583
BstFNI CGCG 1 cut(s) 221
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 66, 261, 268
BstMAI GTCTC 2 cut(s) 87, 207
BstMBI GATC 3 cut(s) 63, 258, 265
BstMCI CGRYCG 2 cut(s) 66, 268
BstMWI GCNNNNNNNGC 7 cut(s) 179, 215, 224, 314, 323, 400, 463
BstNSI RCATGY 2 cut(s) 248, 575
BstUI CGCG 1 cut(s) 221
BstV1I GCAGC 1 cut(s) 304
BstV2I GAAGAC 1 cut(s) 62
BstXI CCANNNNNNTGG 1 cut(s) 574
Bsu15I ATCGAT 1 cut(s) 383
BsuRI GGCC 5 cut(s) 188, 209, 218, 227, 497
BsuTUI ATCGAT 1 cut(s) 383
BtgI CCRYGG 1 cut(s) 219
BtsCI GGATG 2 cut(s) 49, 583
BveI ACCTGC 1 cut(s) 594
Cac8I GCNNGC 3 cut(s) 9, 422, 591
CfoI GCGC 1 cut(s) 7
Cfr42I CCGCGG 1 cut(s) 222
ClaI ATCGAT 1 cut(s) 383
CviAII CATG 5 cut(s) 170, 245, 395, 550, 572
DdeI CTNAG 5 cut(s) 19, 78, 183, 234, 594
DpnI GATC 3 cut(s) 65, 260, 267
DpnII GATC 3 cut(s) 63, 258, 265
DriI GACNNNNNGTC 1 cut(s) 155
EaeI YGGCCR 3 cut(s) 207, 216, 495
Eam1104I CTCTTC 2 cut(s) 94, 101
Eam1105I GACNNNNNGTC 1 cut(s) 155
EarI CTCTTC 2 cut(s) 94, 101
Eco147I AGGCCT 1 cut(s) 227
Eco57I CTGAAG 2 cut(s) 306, 453
Eco88I CYCGRG 1 cut(s) 389
FaeI CATG 5 cut(s) 173, 248, 398, 553, 575
FaiI YATR 8 cut(s) 171, 246, 336, 396, 545, 551, 573, 617
FatI CATG 5 cut(s) 169, 244, 394, 549, 571
Fnu4HI GCNGC 3 cut(s) 194, 219, 318
FokI GGATG 2 cut(s) 36, 590
Fsp4HI GCNGC 3 cut(s) 194, 219, 318
GlaI GCGC 1 cut(s) 6
GluI GCNGC 3 cut(s) 194, 219, 318
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 5 cut(s) 188, 209, 218, 227, 497
HapII CCGG 2 cut(s) 141, 206
HhaI GCGC 1 cut(s) 7
Hin1II CATG 5 cut(s) 173, 248, 398, 553, 575
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HinfI GANTC 7 cut(s) 80, 144, 200, 380, 385, 441, 526
HpaII CCGG 2 cut(s) 141, 206
HphI GGTGA 2 cut(s) 253, 518
Hpy166II GTNNAC 1 cut(s) 484
Hpy188I TCNGA 5 cut(s) 54, 79, 149, 286, 433
Hpy188III TCNNGA 4 cut(s) 67, 141, 389, 530
Hpy8I GTNNAC 1 cut(s) 484
Hpy99I CGWCG 1 cut(s) 181
HpyAV CCTTC 6 cut(s) 84, 238, 281, 370, 428, 470
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 1 cut(s) 581
HpyF10VI GCNNNNNNNGC 7 cut(s) 179, 215, 224, 314, 323, 400, 463
HpyF3I CTNAG 5 cut(s) 19, 78, 183, 234, 594
HpySE526I ACGT 1 cut(s) 151
Hsp92II CATG 5 cut(s) 173, 248, 398, 553, 575
HspAI GCGC 1 cut(s) 5
Kpn2I TCCGGA 1 cut(s) 140
KspI CCGCGG 1 cut(s) 222
Kzo9I GATC 3 cut(s) 63, 258, 265
LmnI GCTCC 1 cut(s) 178
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 3 cut(s) 58, 433, 568
MaeII ACGT 1 cut(s) 151
MalI GATC 3 cut(s) 65, 260, 267
MboI GATC 3 cut(s) 63, 258, 265
MboII GAAGA 4 cut(s) 67, 81, 88, 91
MluCI AATT 1 cut(s) 449
MlyI GAGTC 2 cut(s) 89, 209
MnlI CCTC 5 cut(s) 52, 115, 129, 217, 502
MroI TCCGGA 1 cut(s) 140
MroXI GAANNNNTTC 3 cut(s) 127, 384, 558
MseI TTAA 1 cut(s) 453
MslI CAYNNNNRTG 3 cut(s) 168, 548, 576
MspA1I CMGCKG 2 cut(s) 221, 420
MspI CCGG 2 cut(s) 141, 206
MvnI CGCG 1 cut(s) 221
MwoI GCNNNNNNNGC 7 cut(s) 179, 215, 224, 314, 323, 400, 463
NdeII GATC 3 cut(s) 63, 258, 265
NlaIII CATG 5 cut(s) 173, 248, 398, 553, 575
NmeAIII GCCGAG 1 cut(s) 214
NspI RCATGY 2 cut(s) 248, 575
PceI AGGCCT 1 cut(s) 227
PcsI WCGNNNNNNNCGW 2 cut(s) 50, 407
PdmI GAANNNNTTC 3 cut(s) 127, 384, 558
PfeI GAWTC 5 cut(s) 144, 380, 385, 441, 526
PkrI GCNGC 3 cut(s) 195, 220, 319
Ple19I CGATCG 2 cut(s) 66, 268
PleI GAGTC 2 cut(s) 88, 208
PpsI GAGTC 2 cut(s) 88, 208
PvuI CGATCG 2 cut(s) 66, 268
RseI CAYNNNNRTG 3 cut(s) 168, 548, 576
SacII CCGCGG 1 cut(s) 222
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 3 cut(s) 194, 219, 318
Sau3AI GATC 3 cut(s) 63, 258, 265
SchI GAGTC 2 cut(s) 89, 209
SfaNI GCATC 3 cut(s) 58, 433, 568
SfiI GGCCNNNNNGGCC 2 cut(s) 215, 224
Sfr303I CCGCGG 1 cut(s) 222
SgrBI CCGCGG 1 cut(s) 222
SmiMI CAYNNNNRTG 3 cut(s) 168, 548, 576
Sse9I AATT 1 cut(s) 449
SseBI AGGCCT 1 cut(s) 227
SsiI CCGC 4 cut(s) 194, 219, 221, 418
StuI AGGCCT 1 cut(s) 227
TaaI ACNGT 1 cut(s) 352
TaiI ACGT 1 cut(s) 154
TaqI TCGA 6 cut(s) 36, 44, 62, 121, 383, 410
TasI AATT 1 cut(s) 449
TauI GCSGC 2 cut(s) 196, 221
TfiI GAWTC 5 cut(s) 144, 380, 385, 441, 526
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TseI GCWGC 1 cut(s) 317
TspDTI ATGAA 4 cut(s) 158, 411, 551, 589
TspGWI ACGGA 3 cut(s) 97, 125, 165
XapI RAATTY 1 cut(s) 449
XceI RCATGY 2 cut(s) 248, 575
XmnI GAANNNNTTC 3 cut(s) 127, 384, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.