MD15G1239000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0010478
Physical Location & Seq
Forward (+)
19676474 .. 19677826
1353 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1239000.v1.1.491

Sequence Viewer

Length: 465 bp
ATGGCGCTTTCTCGAAAGCATGCAGCCCCAATCTTCTTCCTCCCTCCTCTGCTTCACCGAGTGAACTCGCTGAGGTCGACAACTCGGATCTCGACCAGCCCTCCTATGGCTTTTGCTCACCACCCAATATCCATTCTTCTCAAAACTTCAAAGCACCCAAAGACTTCGATTCTGAAATCTCCTCTTCCTCTTCCTCCTTCTTTTTCCTCCATTTCTCTTCCTCTCAAACCTCGCAATCTCTCCTTGTTGTTAAGGTCCCGAATTCCAGGGCATAAAGGTAATTACAGTTCTCCGCCGTCGGCGCAGGTGGAGCCCCAGGAGTATCAGGCGAGTTCAGCTGCGGACGCCTTCACTAACTTCAAAGCATCTTCTGCTGCCCATCACCGATGGGAACCCATATCTCTCCGAGGGCACGAGACGGGCTATAGCTACTGTTGCTGCTTTGGCGAAGAAGTATGGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.02

Weight (kDa)

10.02

Isoelectric Point (pI)

53.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66090
fragaria_vesca FvH4_1g11240 FvH4_1g11240 FvH4_1g11240 FvH4_1g11240 FvH4_1g11240 FvH4_1g11240
malus_domestica MD02G1124800.v1.1 MD15G1239000.v1.1
prunus_persica Prupe.7G173500_v2.0.a1
pyrus_communis pycom02g09750
rosa_chinensis RchiOBHm_Chr2g0098651
rosa_laevigata RLG00000016821
rosa_multiflora Rmu_sc0002776.1_g000021
rosa_roxburghii Rroxscaffold_2G00143810
rosa_rugosa Rorug02G0073900
rosa_samantha Rh2AG121700 Rh2BG125300 Rh2CG126300 Rh2DG127400
rosa_wichuraiana Rw0G004170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 295
Acc36I ACCTGC 1 cut(s) 295
AccI GTMKAC 1 cut(s) 77
AciI CCGC 2 cut(s) 293, 341
AclWI GGATC 1 cut(s) 95
AcsI RAATTY 1 cut(s) 261
AcyI GRCGYC 1 cut(s) 345
AdeI CACNNNGTG 1 cut(s) 61
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 2 cut(s) 150, 361
AjnI CCWGG 2 cut(s) 265, 315
AluBI AGCT 2 cut(s) 338, 429
AluI AGCT 2 cut(s) 338, 429
Alw26I GTCTC 1 cut(s) 410
AlwI GGATC 1 cut(s) 95
ApeKI GCWGC 4 cut(s) 23, 338, 374, 438
ApoI RAATTY 1 cut(s) 261
AspLEI GCGC 2 cut(s) 7, 304
AspS9I GGNCC 1 cut(s) 255
AsuHPI GGTGA 3 cut(s) 47, 110, 374
AvaII GGWCC 1 cut(s) 255
BaeGI GKGCMC 1 cut(s) 414
BanII GRGCYC 1 cut(s) 315
BauI CACGAG 1 cut(s) 413
BbvCI CCTCAGC 1 cut(s) 71
BbvI GCAGC 4 cut(s) 35, 325, 361, 425
BccI CCATC 2 cut(s) 381, 387
BceAI ACGGC 1 cut(s) 280
BciT130I CCWGG 2 cut(s) 267, 317
BcoDI GTCTC 1 cut(s) 410
BfmI CTRYAG 1 cut(s) 424
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 295
BisI GCNGC 4 cut(s) 24, 339, 375, 439
BlsI GCNGC 4 cut(s) 25, 340, 376, 440
Bme1390I CCNGG 2 cut(s) 267, 317
Bme18I GGWCC 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 3 cut(s) 257, 312, 393
BmrFI CCNGG 2 cut(s) 267, 317
BmsI GCATC 1 cut(s) 374
Bpu10I CCTNAGC 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 345
BsaJI CCNNGG 3 cut(s) 266, 315, 406
BsaXI ACNNNNNCTCC 2 cut(s) 85, 115
Bsc4I CCNNNNNNNGG 1 cut(s) 106
BseBI CCWGG 2 cut(s) 267, 317
BseDI CCNNGG 3 cut(s) 266, 315, 406
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 62
BseRI GAGGAG 2 cut(s) 36, 171
BseSI GKGCMC 1 cut(s) 414
BseXI GCAGC 4 cut(s) 35, 325, 361, 425
BslFI GGGAC 1 cut(s) 241
BslI CCNNNNNNNGG 1 cut(s) 106
BsmAI GTCTC 1 cut(s) 410
BsmBI CGTCTC 1 cut(s) 410
BsmFI GGGAC 1 cut(s) 241
Bsp1286I GDGCHC 2 cut(s) 315, 414
Bsp143I GATC 1 cut(s) 87
BspACI CCGC 2 cut(s) 293, 341
BspCNI CTCAG 1 cut(s) 63
BspLI GGNNCC 3 cut(s) 257, 312, 393
BspMI ACCTGC 1 cut(s) 295
BspPI GGATC 1 cut(s) 95
BssECI CCNNGG 3 cut(s) 266, 315, 406
BssMI GATC 1 cut(s) 87
BssNI GRCGYC 1 cut(s) 345
BssSI CACGAG 1 cut(s) 413
Bst2BI CACGAG 1 cut(s) 413
Bst2UI CCWGG 2 cut(s) 267, 317
Bst4CI ACNGT 2 cut(s) 287, 434
Bst6I CTCTTC 3 cut(s) 189, 195, 222
BstACI GRCGYC 1 cut(s) 345
BstAPI GCANNNNNTGC 1 cut(s) 371
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 1 cut(s) 71
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 304
BstKTI GATC 1 cut(s) 90
BstMAI GTCTC 1 cut(s) 410
BstMBI GATC 1 cut(s) 87
BstMWI GCNNNNNNNGC 7 cut(s) 301, 310, 335, 344, 371, 435, 444
BstNI CCWGG 2 cut(s) 267, 317
BstNSI RCATGY 1 cut(s) 23
BstSCI CCNGG 2 cut(s) 265, 315
BstSFI CTRYAG 1 cut(s) 424
BstSLI GKGCMC 1 cut(s) 414
BstV1I GCAGC 4 cut(s) 35, 325, 361, 425
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
BveI ACCTGC 1 cut(s) 295
Cac8I GCNNGC 1 cut(s) 21
CfoI GCGC 2 cut(s) 7, 304
Cfr13I GGNCC 1 cut(s) 255
CseI GACGC 1 cut(s) 353
CviAII CATG 1 cut(s) 20
CviJI RGCY 7 cut(s) 26, 99, 110, 313, 338, 423, 429
CviKI_1 RGCY 7 cut(s) 26, 99, 110, 313, 338, 423, 429
DdeI CTNAG 1 cut(s) 71
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
DraIII CACNNNGTG 1 cut(s) 61
Eam1104I CTCTTC 3 cut(s) 189, 195, 222
EarI CTCTTC 3 cut(s) 189, 195, 222
EciI GGCGGA 1 cut(s) 282
Eco24I GRGCYC 1 cut(s) 315
Eco47I GGWCC 1 cut(s) 255
EcoO109I RGGNCCY 1 cut(s) 255
EcoRI GAATTC 1 cut(s) 261
EcoRII CCWGG 2 cut(s) 265, 315
EcoT38I GRGCYC 1 cut(s) 315
Esp3I CGTCTC 1 cut(s) 410
FaeI CATG 1 cut(s) 23
FaiI YATR 6 cut(s) 21, 107, 273, 398, 426, 457
FaqI GGGAC 1 cut(s) 241
FatI CATG 1 cut(s) 19
FblI GTMKAC 1 cut(s) 77
Fnu4HI GCNGC 4 cut(s) 24, 339, 375, 439
FriOI GRGCYC 1 cut(s) 315
Fsp4HI GCNGC 4 cut(s) 24, 339, 375, 439
GlaI GCGC 2 cut(s) 6, 303
GluI GCNGC 4 cut(s) 24, 339, 375, 439
HaeII RGCGCY 1 cut(s) 8
HgaI GACGC 1 cut(s) 353
HhaI GCGC 2 cut(s) 7, 304
Hin1I GRCGYC 1 cut(s) 345
Hin1II CATG 1 cut(s) 23
Hin6I GCGC 2 cut(s) 5, 302
HinP1I GCGC 2 cut(s) 5, 302
HincII GTYRAC 1 cut(s) 78
HindII GTYRAC 1 cut(s) 78
HinfI GANTC 1 cut(s) 169
HphI GGTGA 3 cut(s) 47, 110, 374
Hpy166II GTNNAC 2 cut(s) 64, 78
Hpy188I TCNGA 4 cut(s) 87, 174, 407, 464
Hpy188III TCNNGA 3 cut(s) 12, 91, 258
Hpy8I GTNNAC 2 cut(s) 64, 78
Hpy99I CGWCG 1 cut(s) 301
HpyAV CCTTC 2 cut(s) 207, 358
HpyCH4III ACNGT 2 cut(s) 287, 434
HpyCH4V TGCA 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 7 cut(s) 301, 310, 335, 344, 371, 435, 444
HpyF3I CTNAG 1 cut(s) 71
Hsp92I GRCGYC 1 cut(s) 345
Hsp92II CATG 1 cut(s) 23
HspAI GCGC 2 cut(s) 5, 302
Kzo9I GATC 1 cut(s) 87
LmnI GCTCC 1 cut(s) 310
LpnPI CCDG 7 cut(s) 109, 252, 279, 290, 302, 311, 329
Lsp1109I GCAGC 4 cut(s) 35, 325, 361, 425
LweI GCATC 1 cut(s) 374
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 8 cut(s) 25, 28, 128, 176, 182, 209, 360, 461
MflI RGATCY 1 cut(s) 87
MhlI GDGCHC 2 cut(s) 315, 414
MluCI AATT 2 cut(s) 261, 280
MseI TTAA 1 cut(s) 251
MspA1I CMGCKG 1 cut(s) 338
MspR9I CCNGG 2 cut(s) 267, 317
MvaI CCWGG 2 cut(s) 267, 317
MwoI GCNNNNNNNGC 7 cut(s) 301, 310, 335, 344, 371, 435, 444
NdeII GATC 1 cut(s) 87
NlaIII CATG 1 cut(s) 23
NlaIV GGNNCC 3 cut(s) 257, 312, 393
NspI RCATGY 1 cut(s) 23
PaeI GCATGC 1 cut(s) 23
PaqCI CACCTGC 1 cut(s) 295
PcsI WCGNNNNNNNCGW 1 cut(s) 74
PfeI GAWTC 1 cut(s) 169
PkrI GCNGC 4 cut(s) 25, 340, 376, 440
PpuMI RGGWCCY 1 cut(s) 255
Psp5II RGGWCCY 1 cut(s) 255
Psp6I CCWGG 2 cut(s) 265, 315
PspGI CCWGG 2 cut(s) 265, 315
PspN4I GGNNCC 3 cut(s) 257, 312, 393
PspPI GGNCC 1 cut(s) 255
PspPPI RGGWCCY 1 cut(s) 255
PsrI GAACNNNNNNTAC 2 cut(s) 271, 303
PsuI RGATCY 1 cut(s) 87
PvuII CAGCTG 1 cut(s) 338
SalI GTCGAC 1 cut(s) 76
SaqAI TTAA 1 cut(s) 251
SatI GCNGC 4 cut(s) 24, 339, 375, 439
Sau3AI GATC 1 cut(s) 87
Sau96I GGNCC 1 cut(s) 255
ScrFI CCNGG 2 cut(s) 267, 317
SduI GDGCHC 2 cut(s) 315, 414
SetI ASST 7 cut(s) 77, 232, 257, 280, 309, 340, 431
SfaNI GCATC 1 cut(s) 374
SfcI CTRYAG 1 cut(s) 424
SinI GGWCC 1 cut(s) 255
SphI GCATGC 1 cut(s) 23
Sse9I AATT 2 cut(s) 261, 280
SsiI CCGC 2 cut(s) 293, 341
StyD4I CCNGG 2 cut(s) 265, 315
TaaI ACNGT 2 cut(s) 287, 434
TaqI TCGA 4 cut(s) 13, 77, 92, 167
TasI AATT 2 cut(s) 261, 280
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 1 cut(s) 251
Tru9I TTAA 1 cut(s) 251
TseI GCWGC 4 cut(s) 23, 338, 374, 438
VpaK11BI GGWCC 1 cut(s) 255
XapI RAATTY 1 cut(s) 261
XceI RCATGY 1 cut(s) 23
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XmiI GTMKAC 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.