Rw0G004170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00162
OG0010478
Physical Location & Seq
Forward (+)
62215 .. 63710
1496 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G004170.1

Sequence Viewer

Length: 603 bp
ATGGCGCTTGCTCACTACTCAGTCGCCGTTCCCATCGAAGCCTCGAAGCATCCGACGACTTCGATCCTAAAACCTTCTGAGTCTCACTCTTCACTCTTCTTCTCCTCCGTTTCCAAACCTCGAAGCTCAATCGCTTTCATTGCTCCGTCGGCTCAGGCCGAGCCGCAGGAGTCTCCGGCCAGTTTGGCCGCGGAGGCCTTCACTCAGTTCAAGCATGTGCTTTTACCGATCACCGATCGCAATCCCTATCTCTCTGAAGGAACAAGACAGGCAATAGCTACTTCTGCTGCTTTGGCAAACAAGTATGGGGCTGACCTTACTGTTGTGGTTATTGATGAGAAGCAGAAGGAATCCATTCCCGAGCATGAAACGCAACTTTCGACTATCCGCTGGCATCTCTCTGAAGGTGGATTTCAAGAATTTAAGCTATTAGAGCGACTTGGGGAAGGGGTCAACAAGCCAACGGCCATCATCGGTGAGGTTGCTGATGACCTGAATCTGGATTTAGTTGTCATAAGCATGGAAGCTATTCATTCCAAGCATGTGGATGCAAACCTGCTTGCTGAGTTCATTCCTTGCCCTGTCATACTTTTGCCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

21.66

Weight (kDa)

5.31

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66090
fragaria_vesca FvH4_1g11240 FvH4_1g11240 FvH4_1g11240 FvH4_1g11240 FvH4_1g11240 FvH4_1g11240
malus_domestica MD02G1124800.v1.1 MD15G1239000.v1.1
prunus_persica Prupe.7G173500_v2.0.a1
pyrus_communis pycom02g09750
rosa_chinensis RchiOBHm_Chr2g0098651
rosa_laevigata RLG00000016821
rosa_multiflora Rmu_sc0002776.1_g000021
rosa_roxburghii Rroxscaffold_2G00143810
rosa_rugosa Rorug02G0073900
rosa_samantha Rh2AG121700 Rh2BG125300 Rh2CG126300 Rh2DG127400
rosa_wichuraiana Rw0G004170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 564
AccII CGCG 1 cut(s) 191
AciI CCGC 4 cut(s) 164, 189, 191, 388
AclWI GGATC 1 cut(s) 58
AcoI YGGCCR 3 cut(s) 177, 186, 465
AcsI RAATTY 1 cut(s) 419
AcuI CTGAAG 2 cut(s) 276, 423
AfiI CCNNNNNNNGG 1 cut(s) 499
AgsI TTSAA 2 cut(s) 211, 416
AluBI AGCT 4 cut(s) 126, 278, 427, 527
AluI AGCT 4 cut(s) 126, 278, 427, 527
Alw26I GTCTC 2 cut(s) 87, 177
AlwI GGATC 1 cut(s) 58
Ama87I CYCGRG 1 cut(s) 359
AoxI GGCC 5 cut(s) 156, 177, 186, 195, 465
ApeKI GCWGC 1 cut(s) 287
ApoI RAATTY 1 cut(s) 419
Asp700I GAANNNNTTC 2 cut(s) 354, 528
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 2 cut(s) 223, 488
AvaI CYCGRG 1 cut(s) 359
BbvI GCAGC 1 cut(s) 274
BccI CCATC 2 cut(s) 41, 476
BceAI ACGGC 2 cut(s) 11, 480
BcoDI GTCTC 2 cut(s) 87, 177
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 564
BglI GCCNNNNNGGC 2 cut(s) 185, 194
BisI GCNGC 3 cut(s) 164, 189, 288
BlsI GCNGC 3 cut(s) 165, 190, 289
BmeT110I CYCGRG 1 cut(s) 359
BmsI GCATC 3 cut(s) 58, 403, 538
BplI GAGNNNNNCTC 2 cut(s) 71, 103
Bpu10I CCTNAGC 1 cut(s) 153
BsaBI GATNNNNATC 1 cut(s) 240
BsaJI CCNNGG 1 cut(s) 189
Bsc4I CCNNNNNNNGG 1 cut(s) 499
Bse1I ACTGG 1 cut(s) 180
Bse3DI GCAATG 1 cut(s) 138
Bse8I GATNNNNATC 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 2 cut(s) 49, 553
BseJI GATNNNNATC 1 cut(s) 240
BseLI CCNNNNNNNGG 1 cut(s) 499
BseMI GCAATG 1 cut(s) 138
BseMII CTCAG 5 cut(s) 33, 69, 167, 218, 555
BseNI ACTGG 1 cut(s) 180
BseRI GAGGAG 1 cut(s) 94
BseXI GCAGC 1 cut(s) 274
Bsh1236I CGCG 1 cut(s) 191
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 5 cut(s) 158, 179, 188, 197, 467
BsiEI CGRYCG 1 cut(s) 238
BsiHKCI CYCGRG 1 cut(s) 359
BsiSI CCGG 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 499
BsmAI GTCTC 2 cut(s) 87, 177
BsnI GGCC 5 cut(s) 158, 179, 188, 197, 467
BsoBI CYCGRG 1 cut(s) 359
Bsp143I GATC 3 cut(s) 63, 228, 235
BspACI CCGC 4 cut(s) 164, 189, 191, 388
BspANI GGCC 5 cut(s) 158, 179, 188, 197, 467
BspCNI CTCAG 5 cut(s) 32, 70, 166, 217, 556
BspFNI CGCG 1 cut(s) 191
BspMI ACCTGC 1 cut(s) 564
BspPI GGATC 1 cut(s) 58
BsrDI GCAATG 1 cut(s) 138
BsrI ACTGG 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 3 cut(s) 63, 228, 235
Bst4CI ACNGT 1 cut(s) 322
Bst6I CTCTTC 2 cut(s) 94, 101
BstC8I GCNNGC 3 cut(s) 9, 392, 561
BstDEI CTNAG 5 cut(s) 19, 78, 153, 204, 564
BstDSI CCRYGG 1 cut(s) 189
BstF5I GGATG 2 cut(s) 49, 553
BstFNI CGCG 1 cut(s) 191
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 66, 231, 238
BstMAI GTCTC 2 cut(s) 87, 177
BstMBI GATC 3 cut(s) 63, 228, 235
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 8 cut(s) 140, 149, 185, 194, 284, 293, 370, 433
BstNSI RCATGY 2 cut(s) 218, 545
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 1 cut(s) 274
BstXI CCANNNNNNTGG 1 cut(s) 544
BsuRI GGCC 5 cut(s) 158, 179, 188, 197, 467
BtgI CCRYGG 1 cut(s) 189
BtsCI GGATG 2 cut(s) 49, 553
BveI ACCTGC 1 cut(s) 564
Cac8I GCNNGC 3 cut(s) 9, 392, 561
CfoI GCGC 1 cut(s) 7
Cfr42I CCGCGG 1 cut(s) 192
CviAII CATG 4 cut(s) 215, 365, 520, 542
DdeI CTNAG 5 cut(s) 19, 78, 153, 204, 564
DpnI GATC 3 cut(s) 65, 230, 237
DpnII GATC 3 cut(s) 63, 228, 235
EaeI YGGCCR 3 cut(s) 177, 186, 465
Eam1104I CTCTTC 2 cut(s) 94, 101
EarI CTCTTC 2 cut(s) 94, 101
Eco147I AGGCCT 1 cut(s) 197
Eco57I CTGAAG 2 cut(s) 276, 423
Eco88I CYCGRG 1 cut(s) 359
FaeI CATG 4 cut(s) 218, 368, 523, 545
FaiI YATR 7 cut(s) 216, 306, 366, 515, 521, 543, 587
FatI CATG 4 cut(s) 214, 364, 519, 541
Fnu4HI GCNGC 3 cut(s) 164, 189, 288
FokI GGATG 2 cut(s) 36, 560
Fsp4HI GCNGC 3 cut(s) 164, 189, 288
GlaI GCGC 1 cut(s) 6
GluI GCNGC 3 cut(s) 164, 189, 288
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 5 cut(s) 158, 179, 188, 197, 467
HapII CCGG 1 cut(s) 176
HhaI GCGC 1 cut(s) 7
Hin1II CATG 4 cut(s) 218, 368, 523, 545
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HinfI GANTC 4 cut(s) 80, 170, 350, 496
HpaII CCGG 1 cut(s) 176
HphI GGTGA 2 cut(s) 223, 488
Hpy166II GTNNAC 1 cut(s) 454
Hpy188I TCNGA 4 cut(s) 54, 79, 256, 403
Hpy188III TCNNGA 3 cut(s) 359, 416, 500
Hpy8I GTNNAC 1 cut(s) 454
Hpy99I CGWCG 2 cut(s) 58, 151
HpyAV CCTTC 6 cut(s) 84, 208, 251, 340, 398, 440
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4V TGCA 1 cut(s) 551
HpyF10VI GCNNNNNNNGC 8 cut(s) 140, 149, 185, 194, 284, 293, 370, 433
HpyF3I CTNAG 5 cut(s) 19, 78, 153, 204, 564
Hsp92II CATG 4 cut(s) 218, 368, 523, 545
HspAI GCGC 1 cut(s) 5
KspI CCGCGG 1 cut(s) 192
Kzo9I GATC 3 cut(s) 63, 228, 235
LmnI GCTCC 1 cut(s) 148
Lsp1109I GCAGC 1 cut(s) 274
LweI GCATC 3 cut(s) 58, 403, 538
MalI GATC 3 cut(s) 65, 230, 237
MboI GATC 3 cut(s) 63, 228, 235
MboII GAAGA 3 cut(s) 81, 88, 91
MluCI AATT 1 cut(s) 419
MlyI GAGTC 2 cut(s) 89, 179
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 5 cut(s) 52, 115, 129, 187, 472
MroXI GAANNNNTTC 2 cut(s) 354, 528
MseI TTAA 1 cut(s) 423
MslI CAYNNNNRTG 2 cut(s) 518, 546
MspA1I CMGCKG 2 cut(s) 191, 390
MspI CCGG 1 cut(s) 176
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 8 cut(s) 140, 149, 185, 194, 284, 293, 370, 433
NdeII GATC 3 cut(s) 63, 228, 235
NlaIII CATG 4 cut(s) 218, 368, 523, 545
NmeAIII GCCGAG 1 cut(s) 184
NspI RCATGY 2 cut(s) 218, 545
PceI AGGCCT 1 cut(s) 197
PcsI WCGNNNNNNNCGW 2 cut(s) 50, 377
PdmI GAANNNNTTC 2 cut(s) 354, 528
PfeI GAWTC 2 cut(s) 350, 496
PkrI GCNGC 3 cut(s) 165, 190, 289
Ple19I CGATCG 1 cut(s) 238
PleI GAGTC 2 cut(s) 88, 178
PpsI GAGTC 2 cut(s) 88, 178
PvuI CGATCG 1 cut(s) 238
RseI CAYNNNNRTG 2 cut(s) 518, 546
SacII CCGCGG 1 cut(s) 192
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 3 cut(s) 164, 189, 288
Sau3AI GATC 3 cut(s) 63, 228, 235
SchI GAGTC 2 cut(s) 89, 179
SfaNI GCATC 3 cut(s) 58, 403, 538
SfiI GGCCNNNNNGGCC 2 cut(s) 185, 194
Sfr303I CCGCGG 1 cut(s) 192
SgrBI CCGCGG 1 cut(s) 192
SmiMI CAYNNNNRTG 2 cut(s) 518, 546
Sse9I AATT 1 cut(s) 419
SseBI AGGCCT 1 cut(s) 197
SsiI CCGC 4 cut(s) 164, 189, 191, 388
StuI AGGCCT 1 cut(s) 197
TaaI ACNGT 1 cut(s) 322
TaqI TCGA 5 cut(s) 36, 44, 62, 121, 380
TasI AATT 1 cut(s) 419
TauI GCSGC 2 cut(s) 166, 191
TfiI GAWTC 2 cut(s) 350, 496
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TseI GCWGC 1 cut(s) 287
TspDTI ATGAA 4 cut(s) 127, 381, 521, 559
TspGWI ACGGA 2 cut(s) 97, 135
XapI RAATTY 1 cut(s) 419
XceI RCATGY 2 cut(s) 218, 545
XmnI GAANNNNTTC 2 cut(s) 354, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.