AT5G67020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014002
Physical Location & Seq
Forward (+)
26749826 .. 26751339
1514 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G67020.1

Sequence Viewer

Length: 1185 bp
ATGGTCGACGTTGACCGGAGAATGACCGGTTTGACTCCGGCTCACGCAGCCGGTCTCCGCCGTCTCTCAGCTCGCGCCGCCGCTCCATCCACTCCTACGATCAGAAACAGCCTTCAATCTTTCTCCCCTTTCGCCGATAAAGTAATCAATCATCTTAAAAATTCAGGTATCAAAATCCAACCAGGTCTCTCCGACACCGAGTTTGCCCGAGTCGAAGCCGAGTTTGGTTTCACCTTCCCACCGGACCTCCGTGTTATCCTCTCCGCCGGTCTCTCCGTCGGCGCAGGATTCCCAGACTGGCGTTCTCCCGGAGCTCGTCTCCACCTCCGTGCCATGATCGATTTACCAGTCGCCGCTGTATCGTTCCAAATCGCTAAAAACAGTCTCTGGTGCAAATCTTGGGGCTTGAAACCACCCGACCCGGAAAAAGCTTTAAGGGTCGCGAGAAACGCCTTAAAAAGAGCTCCTTTACTGATTCCCATCTTTGATCACTGCTACATTCCTTGTAACCCGTCTTTAGCTGGTAATCCGGTTTTCTTCATCGACGAGACTCGGATCTTCTGTTGCGGGTCGGATCTATCCGAGTTCTTCGAGCGTGAATCTGCTTTTCGAAGCTCTGAATTCTTCCCGAGAATTCTCACTAAGCAACGTTCAGTGAGCGAGAAATCAGCTGGATCATCCTCGAATTTTTCCCGGAGAAGCTTAGATTTGGGTCGGGCTAATGGTGCGGGTAAGTCGAGATGGGTTGAGTTTTGGAGTGACGCGGCGGTTGATCGTTGCCGGCGAAACTCTGCCTCCACATCATCGTCGTCTTCTTCATCGCCGGACCTTCCCAAAACAGAGACTCCGAAATGGGTGAACCAGTACGTAAACCGGATCGGTTCGGTTTTAAGAAGAGGCGGGTGGAGCGAATCCGATATTGATGAGATTATCCACGTGTCAGCATCGGGTTTCTTTGAGGGCGAAATGGTAATTATCGATAATCAAACTGTTCTTGATGTGCTTCTATTAAAAGCGGGTCGGATCTCAGAGTCGCTCCGTAAATCCGGGTGGAGCTCCGAAGAAGTCTCGGACGCGCTTGGGTTTGATTTTCGACCGGAAAAGGAGAGGAAACCGGTTAAGAAACTCTCGCCTATGCTCGTCGAACAATTCGAAAAACTTGCTGAATGGGTTTCTCAGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

394

Amino Acids

43.63

Weight (kDa)

9.23

Isoelectric Point (pI)

51.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014002)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50340 AT5G67020
fragaria_vesca FvH4_1g16070
malus_domestica MD02G1172200.v1.1 MD15G1284400.v1.1
prunus_persica Prupe.7G133200_v2.0.a1
pyrus_communis pycom02g13880 pycom15g24700 pycom15g24710
rosa_chinensis RchiOBHm_Chr2g0105691
rosa_laevigata RLG00000017449
rosa_rugosa Rorug02G0129200
rosa_samantha Rh2AG180900 Rh2BG190000 Rh2CG185100 Rh2DG186900
rosa_wichuraiana Rw2G014140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 83
AccI GTMKAC 1 cut(s) 6
AccII CGCG 4 cut(s) 75, 443, 764, 1076
AclI AACGTT 1 cut(s) 649
AclWI GGATC 5 cut(s) 563, 582, 682, 884, 1031
AcsI RAATTY 4 cut(s) 160, 620, 633, 685
AcvI CACGTG 1 cut(s) 937
AfaI GTAC 1 cut(s) 866
AflIII ACRYGT 1 cut(s) 936
AgeI ACCGGT 2 cut(s) 26, 1114
AgsI TTSAA 2 cut(s) 116, 409
AjnI CCWGG 1 cut(s) 181
AjuI GAANNNNNNNTTGG 2 cut(s) 207, 239
AleI CACNNNNGTG 1 cut(s) 327
AluBI AGCT 9 cut(s) 71, 314, 431, 464, 521, 615, 671, 702, 1056
AluI AGCT 9 cut(s) 71, 314, 431, 464, 521, 615, 671, 702, 1056
Alw21I GWGCWC 3 cut(s) 316, 466, 1058
Alw26I GTCTC 9 cut(s) 59, 68, 191, 275, 323, 389, 542, 836, 1072
AlwI GGATC 5 cut(s) 563, 582, 682, 884, 1031
AlwNI CAGNNNCTG 1 cut(s) 387
Ama87I CYCGRG 2 cut(s) 207, 628
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 4 cut(s) 160, 620, 633, 685
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
AsiGI ACCGGT 2 cut(s) 26, 1114
AspLEI GCGC 3 cut(s) 77, 284, 1078
AspS9I GGNCC 2 cut(s) 244, 826
AsuC2I CCSGG 4 cut(s) 309, 422, 694, 1048
AsuHPI GGTGA 2 cut(s) 223, 868
AsuII TTCGAA 2 cut(s) 610, 1152
AvaI CYCGRG 2 cut(s) 207, 628
AvaII GGWCC 2 cut(s) 244, 826
BanII GRGCYC 3 cut(s) 316, 466, 1058
BbrPI CACGTG 1 cut(s) 937
BbsI GAAGAC 1 cut(s) 804
Bbv12I GWGCWC 3 cut(s) 316, 466, 1058
BbvI GCAGC 1 cut(s) 59
BccI CCATC 3 cut(s) 94, 488, 735
BceAI ACGGC 1 cut(s) 45
BcgI CGANNNNNNTGC 2 cut(s) 1142, 1176
BciT130I CCWGG 1 cut(s) 183
BclI TGATCA 1 cut(s) 487
BcnI CCSGG 4 cut(s) 309, 422, 694, 1048
BcoDI GTCTC 9 cut(s) 59, 68, 191, 275, 323, 389, 542, 836, 1072
BisI GCNGC 5 cut(s) 48, 78, 81, 354, 765
BlsI GCNGC 5 cut(s) 49, 79, 82, 355, 766
Bme1390I CCNGG 5 cut(s) 183, 309, 422, 694, 1048
Bme18I GGWCC 2 cut(s) 244, 826
BmeT110I CYCGRG 2 cut(s) 207, 628
BmgT120I GGNCC 2 cut(s) 244, 826
BmrFI CCNGG 5 cut(s) 183, 309, 422, 694, 1048
BmsI GCATC 1 cut(s) 953
BpiI GAAGAC 1 cut(s) 804
BplI GAGNNNNNCTC 2 cut(s) 303, 335
Bpu14I TTCGAA 2 cut(s) 610, 1152
BpuMI CCSGG 4 cut(s) 309, 422, 694, 1048
Bsa29I ATCGAT 2 cut(s) 339, 978
BsaAI YACGTR 2 cut(s) 868, 937
BsaBI GATNNNNATC 1 cut(s) 479
BsaI GGTCTC 3 cut(s) 59, 191, 275
BsaWI WCCGGW 7 cut(s) 15, 26, 241, 529, 873, 1096, 1114
BsaXI ACNNNNNCTCC 6 cut(s) 231, 261, 779, 809, 829, 859
Bse118I RCCGGY 5 cut(s) 26, 50, 266, 780, 1114
Bse1I ACTGG 3 cut(s) 302, 347, 862
Bse8I GATNNNNATC 1 cut(s) 479
BseBI CCWGG 1 cut(s) 183
BseCI ATCGAT 2 cut(s) 339, 978
BseGI GGATG 2 cut(s) 86, 677
BseJI GATNNNNATC 1 cut(s) 479
BseMII CTCAG 2 cut(s) 81, 1041
BseNI ACTGG 3 cut(s) 302, 347, 862
BseXI GCAGC 1 cut(s) 59
Bsh1236I CGCG 4 cut(s) 75, 443, 764, 1076
Bsh1285I CGRYCG 1 cut(s) 1097
BshTI ACCGGT 2 cut(s) 26, 1114
BshVI ATCGAT 2 cut(s) 339, 978
BsiEI CGRYCG 1 cut(s) 1097
BsiHKAI GWGCWC 3 cut(s) 316, 466, 1058
BsiHKCI CYCGRG 2 cut(s) 207, 628
BsmAI GTCTC 9 cut(s) 59, 68, 191, 275, 323, 389, 542, 836, 1072
BsmBI CGTCTC 2 cut(s) 68, 323
Bso31I GGTCTC 3 cut(s) 59, 191, 275
BsoBI CYCGRG 2 cut(s) 207, 628
Bsp119I TTCGAA 2 cut(s) 610, 1152
Bsp1286I GDGCHC 3 cut(s) 316, 466, 1058
Bsp143I GATC 9 cut(s) 99, 336, 487, 555, 574, 674, 772, 876, 1023
Bsp68I TCGCGA 1 cut(s) 443
BspCNI CTCAG 2 cut(s) 80, 1040
BspDI ATCGAT 2 cut(s) 339, 978
BspFNI CGCG 4 cut(s) 75, 443, 764, 1076
BspHI TCATGA 1 cut(s) 1181
BspPI GGATC 5 cut(s) 563, 582, 682, 884, 1031
BspT104I TTCGAA 2 cut(s) 610, 1152
BspTNI GGTCTC 3 cut(s) 59, 191, 275
BsrBI CCGCTC 1 cut(s) 83
BsrFI RCCGGY 5 cut(s) 26, 50, 266, 780, 1114
BsrI ACTGG 3 cut(s) 302, 347, 862
BssAI RCCGGY 5 cut(s) 26, 50, 266, 780, 1114
BssMI GATC 9 cut(s) 99, 336, 487, 555, 574, 674, 772, 876, 1023
Bst2UI CCWGG 1 cut(s) 183
Bst4CI ACNGT 2 cut(s) 383, 991
Bst6I CTCTTC 1 cut(s) 889
BstBAI YACGTR 2 cut(s) 868, 937
BstBI TTCGAA 2 cut(s) 610, 1152
BstC8I GCNNGC 2 cut(s) 73, 782
BstDEI CTNAG 5 cut(s) 67, 642, 703, 1027, 1176
BstF5I GGATG 2 cut(s) 86, 677
BstFNI CGCG 4 cut(s) 75, 443, 764, 1076
BstHHI GCGC 3 cut(s) 77, 284, 1078
BstKTI GATC 9 cut(s) 102, 339, 490, 558, 577, 677, 775, 879, 1026
BstMAI GTCTC 9 cut(s) 59, 68, 191, 275, 323, 389, 542, 836, 1072
BstMBI GATC 9 cut(s) 99, 336, 487, 555, 574, 674, 772, 876, 1023
BstMCI CGRYCG 1 cut(s) 1097
BstMWI GCNNNNNNNGC 5 cut(s) 47, 77, 449, 725, 906
BstNI CCWGG 1 cut(s) 183
BstSCI CCNGG 5 cut(s) 181, 307, 420, 692, 1046
BstSNI TACGTA 1 cut(s) 868
BstUI CGCG 4 cut(s) 75, 443, 764, 1076
BstV1I GCAGC 1 cut(s) 59
BstV2I GAAGAC 1 cut(s) 804
BstX2I RGATCY 3 cut(s) 555, 574, 1023
BstYI RGATCY 3 cut(s) 555, 574, 1023
Bsu15I ATCGAT 2 cut(s) 339, 978
BsuTUI ATCGAT 2 cut(s) 339, 978
BtgZI GCGATG 1 cut(s) 804
BtsCI GGATG 2 cut(s) 86, 677
BtsI GCAGTG 1 cut(s) 490
BtsIMutI CAGTG 2 cut(s) 490, 660
BtuMI TCGCGA 1 cut(s) 443
Cac8I GCNNGC 2 cut(s) 73, 782
CaiI CAGNNNCTG 1 cut(s) 387
CciI TCATGA 1 cut(s) 1181
CfoI GCGC 3 cut(s) 77, 284, 1078
Cfr10I RCCGGY 5 cut(s) 26, 50, 266, 780, 1114
Cfr13I GGNCC 2 cut(s) 244, 826
ClaI ATCGAT 2 cut(s) 339, 978
CseI GACGC 2 cut(s) 770, 1082
CsiI ACCWGGT 1 cut(s) 181
Csp6I GTAC 1 cut(s) 865
CspAI ACCGGT 2 cut(s) 26, 1114
CviAII CATG 2 cut(s) 334, 1182
CviQI GTAC 1 cut(s) 865
DdeI CTNAG 5 cut(s) 67, 642, 703, 1027, 1176
DpnI GATC 9 cut(s) 101, 338, 489, 557, 576, 676, 774, 878, 1025
DpnII GATC 9 cut(s) 99, 336, 487, 555, 574, 674, 772, 876, 1023
Eam1104I CTCTTC 1 cut(s) 889
EarI CTCTTC 1 cut(s) 889
EciI GGCGGA 2 cut(s) 47, 253
Ecl136II GAGCTC 3 cut(s) 314, 464, 1056
Eco105I TACGTA 1 cut(s) 868
Eco24I GRGCYC 3 cut(s) 316, 466, 1058
Eco31I GGTCTC 3 cut(s) 59, 191, 275
Eco47I GGWCC 2 cut(s) 244, 826
Eco53kI GAGCTC 3 cut(s) 314, 464, 1056
Eco72I CACGTG 1 cut(s) 937
Eco88I CYCGRG 2 cut(s) 207, 628
EcoICRI GAGCTC 3 cut(s) 314, 464, 1056
EcoRI GAATTC 2 cut(s) 620, 633
EcoRII CCWGG 1 cut(s) 181
EcoT38I GRGCYC 3 cut(s) 316, 466, 1058
Esp3I CGTCTC 2 cut(s) 68, 323
FaeI CATG 2 cut(s) 337, 1185
FaiI YATR 3 cut(s) 335, 1136, 1183
FalI AAGNNNNNCTT 2 cut(s) 451, 483
FatI CATG 2 cut(s) 333, 1181
FauI CCCGC 4 cut(s) 560, 721, 893, 1009
FbaI TGATCA 1 cut(s) 487
FblI GTMKAC 1 cut(s) 6
Fnu4HI GCNGC 5 cut(s) 48, 78, 81, 354, 765
FokI GGATG 2 cut(s) 73, 664
FriOI GRGCYC 3 cut(s) 316, 466, 1058
Fsp4HI GCNGC 5 cut(s) 48, 78, 81, 354, 765
GlaI GCGC 3 cut(s) 76, 283, 1077
GluI GCNGC 5 cut(s) 48, 78, 81, 354, 765
HgaI GACGC 2 cut(s) 770, 1082
HhaI GCGC 3 cut(s) 77, 284, 1078
Hin1II CATG 2 cut(s) 337, 1185
Hin6I GCGC 3 cut(s) 75, 282, 1076
HinP1I GCGC 3 cut(s) 75, 282, 1076
HincII GTYRAC 2 cut(s) 7, 13
HindII GTYRAC 2 cut(s) 7, 13
HindIII AAGCTT 2 cut(s) 429, 700
HinfI GANTC 9 cut(s) 34, 210, 288, 475, 550, 599, 844, 911, 1031
HphI GGTGA 2 cut(s) 223, 868
Hpy166II GTNNAC 4 cut(s) 7, 13, 859, 871
Hpy188III TCNNGA 5 cut(s) 442, 628, 738, 995, 1182
Hpy8I GTNNAC 4 cut(s) 7, 13, 859, 871
Hpy99I CGWCG 5 cut(s) 11, 281, 548, 811, 1145
HpyAV CCTTC 3 cut(s) 122, 244, 839
HpyCH4III ACNGT 2 cut(s) 383, 991
HpyCH4IV ACGT 4 cut(s) 9, 649, 867, 936
HpyCH4V TGCA 1 cut(s) 393
HpyF10VI GCNNNNNNNGC 5 cut(s) 47, 77, 449, 725, 906
HpyF3I CTNAG 5 cut(s) 67, 642, 703, 1027, 1176
HpySE526I ACGT 4 cut(s) 9, 649, 867, 936
Hsp92II CATG 2 cut(s) 337, 1185
HspAI GCGC 3 cut(s) 75, 282, 1076
KroI GCCGGC 1 cut(s) 780
KroNI GCCGGC 1 cut(s) 782
Ksp22I TGATCA 1 cut(s) 487
Kzo9I GATC 9 cut(s) 99, 336, 487, 555, 574, 674, 772, 876, 1023
LmnI GCTCC 7 cut(s) 88, 311, 469, 906, 1041, 1053, 1061
Lsp1109I GCAGC 1 cut(s) 59
LweI GCATC 1 cut(s) 953
MabI ACCWGGT 1 cut(s) 181
MaeII ACGT 4 cut(s) 9, 649, 867, 936
MaeIII GTNAC 2 cut(s) 506, 758
MalI GATC 9 cut(s) 101, 338, 489, 557, 576, 676, 774, 878, 1025
MbiI CCGCTC 1 cut(s) 83
MboI GATC 9 cut(s) 99, 336, 487, 555, 574, 674, 772, 876, 1023
MboII GAAGA 8 cut(s) 529, 550, 580, 616, 804, 807, 906, 1073
MflI RGATCY 3 cut(s) 555, 574, 1023
MhlI GDGCHC 3 cut(s) 316, 466, 1058
MluCI AATT 6 cut(s) 160, 620, 633, 685, 972, 1148
MlyI GAGTC 5 cut(s) 28, 219, 544, 838, 1040
MmeI TCCRAC 4 cut(s) 202, 216, 552, 1001
MnlI CCTC 8 cut(s) 257, 269, 335, 691, 805, 890, 952, 1101
MroNI GCCGGC 1 cut(s) 780
MseI TTAA 6 cut(s) 156, 434, 455, 890, 1010, 1119
MslI CAYNNNNRTG 1 cut(s) 327
MspA1I CMGCKG 2 cut(s) 356, 671
MspR9I CCNGG 5 cut(s) 183, 309, 422, 694, 1048
MvaI CCWGG 1 cut(s) 183
MvnI CGCG 4 cut(s) 75, 443, 764, 1076
MwoI GCNNNNNNNGC 5 cut(s) 47, 77, 449, 725, 906
NaeI GCCGGC 1 cut(s) 782
NciI CCSGG 4 cut(s) 309, 422, 694, 1048
NdeII GATC 9 cut(s) 99, 336, 487, 555, 574, 674, 772, 876, 1023
NgoMIV GCCGGC 1 cut(s) 780
NlaIII CATG 2 cut(s) 337, 1185
NmeAIII GCCGAG 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 758
NruI TCGCGA 1 cut(s) 443
NspV TTCGAA 2 cut(s) 610, 1152
OliI CACNNNNGTG 1 cut(s) 327
PagI TCATGA 1 cut(s) 1181
PcsI WCGNNNNNNNCGW 2 cut(s) 781, 1149
PdiI GCCGGC 1 cut(s) 782
PfeI GAWTC 4 cut(s) 288, 475, 599, 911
PfoI TCCNGGA 2 cut(s) 307, 692
PinAI ACCGGT 2 cut(s) 26, 1114
PkrI GCNGC 5 cut(s) 49, 79, 82, 355, 766
PleI GAGTC 5 cut(s) 28, 218, 544, 838, 1039
PmaCI CACGTG 1 cut(s) 937
PmlI CACGTG 1 cut(s) 937
PpsI GAGTC 5 cut(s) 28, 218, 544, 838, 1039
Ppu21I YACGTR 2 cut(s) 868, 937
Psp124BI GAGCTC 3 cut(s) 316, 466, 1058
Psp1406I AACGTT 1 cut(s) 649
Psp6I CCWGG 1 cut(s) 181
PspCI CACGTG 1 cut(s) 937
PspGI CCWGG 1 cut(s) 181
PspPI GGNCC 2 cut(s) 244, 826
PstNI CAGNNNCTG 1 cut(s) 387
PsuI RGATCY 3 cut(s) 555, 574, 1023
PvuII CAGCTG 1 cut(s) 671
RruI TCGCGA 1 cut(s) 443
RsaI GTAC 1 cut(s) 866
RsaNI GTAC 1 cut(s) 865
RseI CAYNNNNRTG 1 cut(s) 327
SacI GAGCTC 3 cut(s) 316, 466, 1058
SalI GTCGAC 1 cut(s) 5
SaqAI TTAA 6 cut(s) 156, 434, 455, 890, 1010, 1119
SatI GCNGC 5 cut(s) 48, 78, 81, 354, 765
Sau3AI GATC 9 cut(s) 99, 336, 487, 555, 574, 674, 772, 876, 1023
Sau96I GGNCC 2 cut(s) 244, 826
SchI GAGTC 5 cut(s) 28, 219, 544, 838, 1040
ScrFI CCNGG 5 cut(s) 183, 309, 422, 694, 1048
SduI GDGCHC 3 cut(s) 316, 466, 1058
SexAI ACCWGGT 1 cut(s) 181
SfaNI GCATC 1 cut(s) 953
SfuI TTCGAA 2 cut(s) 610, 1152
SinI GGWCC 2 cut(s) 244, 826
SmiMI CAYNNNNRTG 1 cut(s) 327
SnaBI TACGTA 1 cut(s) 868
Sse9I AATT 6 cut(s) 160, 620, 633, 685, 972, 1148
SstI GAGCTC 3 cut(s) 316, 466, 1058
StyD4I CCNGG 5 cut(s) 181, 307, 420, 692, 1046
TaaI ACNGT 2 cut(s) 383, 991
TaiI ACGT 4 cut(s) 12, 652, 870, 939
TasI AATT 6 cut(s) 160, 620, 633, 685, 972, 1148
TauI GCSGC 4 cut(s) 80, 83, 356, 767
TfiI GAWTC 4 cut(s) 288, 475, 599, 911
Tru1I TTAA 6 cut(s) 156, 434, 455, 890, 1010, 1119
Tru9I TTAA 6 cut(s) 156, 434, 455, 890, 1010, 1119
TscAI CASTG 2 cut(s) 497, 660
TseFI GTSAC 1 cut(s) 758
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 1 cut(s) 758
TspDTI ATGAA 2 cut(s) 529, 807
TspGWI ACGGA 4 cut(s) 239, 265, 317, 1028
TspRI CASTG 2 cut(s) 497, 660
VpaK11BI GGWCC 2 cut(s) 244, 826
XapI RAATTY 4 cut(s) 160, 620, 633, 685
XmiI GTMKAC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.