pycom15g24710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0014002
Physical Location & Seq
Forward (+)
18970926 .. 18971282
357 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g24710.1

Sequence Viewer

Length: 357 bp
ATGCCGTCGAGGTCCGAAATCCCGAAATGGGTGGACGAGTACATTGATCAAATCGGGTCGGCCTTGAGACATGGCGGGTGGAGCGATACGGATATATCGGAGATGGTTTCGGTATCCGCGTCTGGGTTTTTCGAGGGAGAGATGGTTATGTTGGACAACCAAGCGGTACTCGACGCGCTGCTGCTCAAAGCGGATCGGTTCTCGGATTCGCTCCGAAAAGCCGGGTGGAGCTCCGAGGAAGTTTCGGAGGCTTTGGGCTTCAATTTTCGACCCGAGAAGGAGAGGAAACCGGCTAAGAAGCTGTCTCCGGAGCTCGTGGAAAAGATAGGGAAACTGGCCGAGTCGGTTTCCCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.15

Weight (kDa)

4.94

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014002)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50340 AT5G67020
fragaria_vesca FvH4_1g16070
malus_domestica MD02G1172200.v1.1 MD15G1284400.v1.1
prunus_persica Prupe.7G133200_v2.0.a1
pyrus_communis pycom02g13880 pycom15g24700 pycom15g24710
rosa_chinensis RchiOBHm_Chr2g0105691
rosa_laevigata RLG00000017449
rosa_rugosa Rorug02G0129200
rosa_samantha Rh2AG180900 Rh2BG190000 Rh2CG185100 Rh2DG186900
rosa_wichuraiana Rw2G014140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 119, 176
AccIII TCCGGA 1 cut(s) 307
AciI CCGC 4 cut(s) 75, 117, 164, 191
AclWI GGATC 1 cut(s) 201
AcoI YGGCCR 1 cut(s) 336
AfaI GTAC 2 cut(s) 41, 168
AfiI CCNNNNNNNGG 2 cut(s) 28, 123
AgsI TTSAA 1 cut(s) 262
AluBI AGCT 3 cut(s) 231, 301, 313
AluI AGCT 3 cut(s) 231, 301, 313
Alw21I GWGCWC 2 cut(s) 233, 315
Alw26I GTCTC 2 cut(s) 61, 309
AlwI GGATC 1 cut(s) 201
Ama87I CYCGRG 1 cut(s) 272
Aor13HI TCCGGA 1 cut(s) 307
AoxI GGCC 2 cut(s) 60, 336
ApeKI GCWGC 2 cut(s) 178, 181
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 1 cut(s) 12
AsuC2I CCSGG 2 cut(s) 223, 352
AvaI CYCGRG 1 cut(s) 272
AvaII GGWCC 1 cut(s) 12
BanII GRGCYC 2 cut(s) 233, 315
BauI CACGAG 1 cut(s) 314
Bbv12I GWGCWC 2 cut(s) 233, 315
BbvI GCAGC 2 cut(s) 165, 168
BccI CCATC 2 cut(s) 97, 136
BciVI GTATCC 1 cut(s) 124
BclI TGATCA 1 cut(s) 46
BcnI CCSGG 2 cut(s) 223, 352
BcoDI GTCTC 2 cut(s) 61, 309
BfuI GTATCC 1 cut(s) 124
BisI GCNGC 2 cut(s) 179, 182
BlsI GCNGC 2 cut(s) 180, 183
Bme1390I CCNGG 2 cut(s) 223, 352
Bme18I GGWCC 1 cut(s) 12
BmeT110I CYCGRG 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 12
BmrFI CCNGG 2 cut(s) 223, 352
BpuEI CTTGAG 1 cut(s) 85
BpuMI CCSGG 2 cut(s) 223, 352
BsaJI CCNNGG 1 cut(s) 234
BsaWI WCCGGW 1 cut(s) 307
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 123
Bse118I RCCGGY 1 cut(s) 289
Bse1I ACTGG 1 cut(s) 339
BseAI TCCGGA 1 cut(s) 307
BseDI CCNNGG 1 cut(s) 234
BseLI CCNNNNNNNGG 2 cut(s) 28, 123
BseNI ACTGG 1 cut(s) 339
BseXI GCAGC 2 cut(s) 165, 168
Bsh1236I CGCG 2 cut(s) 119, 176
BshFI GGCC 2 cut(s) 62, 338
BsiHKAI GWGCWC 2 cut(s) 233, 315
BsiHKCI CYCGRG 1 cut(s) 272
BsiSI CCGG 4 cut(s) 222, 290, 308, 352
BslI CCNNNNNNNGG 2 cut(s) 28, 123
BsmAI GTCTC 2 cut(s) 61, 309
BsnI GGCC 2 cut(s) 62, 338
BsoBI CYCGRG 1 cut(s) 272
Bsp1286I GDGCHC 2 cut(s) 233, 315
Bsp13I TCCGGA 1 cut(s) 307
Bsp143I GATC 2 cut(s) 46, 193
BspACI CCGC 4 cut(s) 75, 117, 164, 191
BspANI GGCC 2 cut(s) 62, 338
BspEI TCCGGA 1 cut(s) 307
BspFNI CGCG 2 cut(s) 119, 176
BspPI GGATC 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 289
BsrI ACTGG 1 cut(s) 339
BssAI RCCGGY 1 cut(s) 289
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 2 cut(s) 46, 193
BssSI CACGAG 1 cut(s) 314
Bst2BI CACGAG 1 cut(s) 314
BstDEI CTNAG 1 cut(s) 294
BstFNI CGCG 2 cut(s) 119, 176
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 2 cut(s) 49, 196
BstMAI GTCTC 2 cut(s) 61, 309
BstMBI GATC 2 cut(s) 46, 193
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstSCI CCNGG 2 cut(s) 221, 350
BstUI CGCG 2 cut(s) 119, 176
BstV1I GCAGC 2 cut(s) 165, 168
BsuI GTATCC 1 cut(s) 124
BsuRI GGCC 2 cut(s) 62, 338
CfoI GCGC 1 cut(s) 178
Cfr10I RCCGGY 1 cut(s) 289
Cfr13I GGNCC 1 cut(s) 12
CseI GACGC 2 cut(s) 108, 182
Csp6I GTAC 2 cut(s) 40, 167
CviAII CATG 1 cut(s) 71
CviJI RGCY 9 cut(s) 62, 221, 231, 251, 258, 293, 301, 313, 338
CviKI_1 RGCY 9 cut(s) 62, 221, 231, 251, 258, 293, 301, 313, 338
CviQI GTAC 2 cut(s) 40, 167
DdeI CTNAG 1 cut(s) 294
DpnI GATC 2 cut(s) 48, 195
DpnII GATC 2 cut(s) 46, 193
EaeI YGGCCR 1 cut(s) 336
Ecl136II GAGCTC 2 cut(s) 231, 313
Eco24I GRGCYC 2 cut(s) 233, 315
Eco47I GGWCC 1 cut(s) 12
Eco53kI GAGCTC 2 cut(s) 231, 313
Eco88I CYCGRG 1 cut(s) 272
EcoICRI GAGCTC 2 cut(s) 231, 313
EcoT38I GRGCYC 2 cut(s) 233, 315
FaeI CATG 1 cut(s) 74
FaiI YATR 3 cut(s) 72, 95, 149
FatI CATG 1 cut(s) 70
FauI CCCGC 1 cut(s) 68
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 179, 182
FriOI GRGCYC 2 cut(s) 233, 315
Fsp4HI GCNGC 2 cut(s) 179, 182
GlaI GCGC 1 cut(s) 177
GluI GCNGC 2 cut(s) 179, 182
HaeIII GGCC 2 cut(s) 62, 338
HapII CCGG 4 cut(s) 222, 290, 308, 352
HgaI GACGC 2 cut(s) 108, 182
HhaI GCGC 1 cut(s) 178
Hin1II CATG 1 cut(s) 74
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HinfI GANTC 2 cut(s) 206, 341
HpaII CCGG 4 cut(s) 222, 290, 308, 352
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 6 cut(s) 16, 100, 205, 215, 235, 247
Hpy188III TCNNGA 2 cut(s) 22, 308
Hpy8I GTNNAC 1 cut(s) 34
Hpy99I CGWCG 2 cut(s) 10, 176
HpyAV CCTTC 1 cut(s) 271
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 1 cut(s) 294
Hsp92II CATG 1 cut(s) 74
HspAI GCGC 1 cut(s) 176
Kpn2I TCCGGA 1 cut(s) 307
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 2 cut(s) 46, 193
LmnI GCTCC 5 cut(s) 81, 216, 228, 236, 310
LpnPI CCDG 5 cut(s) 108, 235, 303, 320, 321
Lsp1109I GCAGC 2 cut(s) 165, 168
MalI GATC 2 cut(s) 48, 195
MboI GATC 2 cut(s) 46, 193
MhlI GDGCHC 2 cut(s) 233, 315
MluCI AATT 1 cut(s) 262
MlyI GAGTC 1 cut(s) 350
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 5 cut(s) 3, 127, 229, 241, 276
MroI TCCGGA 1 cut(s) 307
MspI CCGG 4 cut(s) 222, 290, 308, 352
MspR9I CCNGG 2 cut(s) 223, 352
MvnI CGCG 2 cut(s) 119, 176
MwoI GCNNNNNNNGC 1 cut(s) 81
NciI CCSGG 2 cut(s) 223, 352
NdeII GATC 2 cut(s) 46, 193
NlaIII CATG 1 cut(s) 74
PcsI WCGNNNNNNNCGW 1 cut(s) 116
PfeI GAWTC 1 cut(s) 206
PkrI GCNGC 2 cut(s) 180, 183
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
Psp124BI GAGCTC 2 cut(s) 233, 315
PspPI GGNCC 1 cut(s) 12
RsaI GTAC 2 cut(s) 41, 168
RsaNI GTAC 2 cut(s) 40, 167
SacI GAGCTC 2 cut(s) 233, 315
SatI GCNGC 2 cut(s) 179, 182
Sau3AI GATC 2 cut(s) 46, 193
Sau96I GGNCC 1 cut(s) 12
SchI GAGTC 1 cut(s) 350
ScrFI CCNGG 2 cut(s) 223, 352
SduI GDGCHC 2 cut(s) 233, 315
SetI ASST 4 cut(s) 14, 233, 303, 315
SinI GGWCC 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
Sse9I AATT 1 cut(s) 262
SsiI CCGC 4 cut(s) 75, 117, 164, 191
SstI GAGCTC 2 cut(s) 233, 315
StyD4I CCNGG 2 cut(s) 221, 350
TaqI TCGA 4 cut(s) 8, 132, 171, 268
TasI AATT 1 cut(s) 262
TatI WGTACW 1 cut(s) 39
TfiI GAWTC 1 cut(s) 206
TseI GCWGC 2 cut(s) 178, 181
TspGWI ACGGA 1 cut(s) 104
VpaK11BI GGWCC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.