FvH4_1g16070

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
9148938 .. 9150595
1658 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16070.t1

Sequence Viewer

Length: 1218 bp
ATGGTCGACGTCGATCGGAGAATGACCGGCCTCAACCCGGCCCACGTCGCCGGCCTACGCCGCCTCTCCGCCCGTGCCGCCGCCGCCCCATCTACCCCCTCCACCACCAAATCCTCCCTCCCCGTACGCAACGGCCTCCTCTCATATTCCTCTCTGGCGGAAAATCTAATCACTCATCTTAAAAACTCGGGTATCCAAGTCCAGCCGGGTCTATCCGAACCCGAATTCGCCCGCGCCGAGGCCGAGTTCGGCTTCGCATTCCCTCCCGACCTCAAAGCCGTCCTCTCCGCCGGCCTCCCCGTCGGCCCCGGCTTCCCCGATTGGCGCGCATCCGGCGCTCGCCTCCACCTCAAGGCCTCCCTCGACCTCCCGATCGCCGCGATTTCGTTCCAAATTGCCCGGAATACCCTCTGGTCCAAGTCCTGGGGTCCGAGACCGTCCGACCCGGAAAAGGCTCTCCGGGTCGCCCGAACCGCCTTGAAAAGAGCGCCGCTTTTGATCCCCATCTTCAACCATTGCTACATTCCTTGCAATCCTTGCCTCGCCGGCAACCCAGTCTTCTTCGTCGACGAGAATCGGATCTTCTGCTGCGGGTCGGATCTCTCCGACTTCTTCGAGCGCGAGTCGGTTTTCCGTAAATCCGACTCCGACCCGTGCATCCTCAAAAAGCAACGCTCCGTCAGCGAAAAATCCGCCGGGTCGTCCGCGAACTTCTCGCGCCGGAGCCTCGACACGGGTCTCGGGTCCGGAGCTGCCAGAACCCCGAGATGGGTCGAGTTCTGGAGCGACGCCGCCGTGGACCGTCGCCGGAGAAACTCAAACTCATCATCCTCCGCATGCTCTTCGCCGGACAGACTATTCGACTTGCCCAGGTCGGAGTCGCCGAAATGGGTCGACGAGTACATTGATCAGATAGGATCCGCTTTGAAACTGGGCGGGTGGTCCGACTCCGATATATCCGATATCGTCTCGGTTTCCGCGTCCGGGTTTTTCGAAGGCGAGATGGTCATGTTAGACAACCAAGCCGTGTTGGACGCTCTTCTGCTCAAGGCGGACCGGTTCTCGGACTCGCTCCGAATGGCCGGGTGGAGCTCCGAGGAAGTTTCGGACGCATTGGGATTCAATTTTCGCGCGGAGAAGGAGAAGAAACCGGCGAAGAAGCTGTCCCCGGAGCTCGTGGAAAGAATCGGGAAACTGGCCGAGTCGGTTTCCCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

406

Amino Acids

44.18

Weight (kDa)

8.79

Isoelectric Point (pI)

42.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014002)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 12
AccB7I CCANNNNNTGG 1 cut(s) 423
AccI GTMKAC 3 cut(s) 6, 567, 894
AccII CGCG 9 cut(s) 234, 327, 380, 621, 707, 718, 980, 1131, 1133
AccIII TCCGGA 1 cut(s) 746
AclWI GGATC 5 cut(s) 493, 587, 606, 912, 925
AcoI YGGCCR 2 cut(s) 1080, 1197
AcsI RAATTY 1 cut(s) 224
AcyI GRCGYC 2 cut(s) 9, 789
AfaI GTAC 2 cut(s) 126, 902
AgeI ACCGGT 1 cut(s) 1056
AgsI TTSAA 4 cut(s) 481, 511, 928, 1123
AjiI CACGTC 1 cut(s) 46
AjnI CCWGG 2 cut(s) 422, 869
AluBI AGCT 4 cut(s) 752, 1092, 1162, 1174
AluI AGCT 4 cut(s) 752, 1092, 1162, 1174
Alw21I GWGCWC 2 cut(s) 1094, 1176
Alw26I GTCTC 3 cut(s) 427, 743, 973
AlwI GGATC 5 cut(s) 493, 587, 606, 912, 925
Ama87I CYCGRG 3 cut(s) 187, 740, 763
Aor13HI TCCGGA 1 cut(s) 746
ApeKI GCWGC 2 cut(s) 588, 752
ApoI RAATTY 1 cut(s) 224
ArsI GACNNNNNNTTYG 4 cut(s) 842, 874, 1148, 1180
AsiGI ACCGGT 1 cut(s) 1056
AspLEI GCGC 8 cut(s) 236, 327, 329, 338, 490, 621, 720, 1133
AspS9I GGNCC 8 cut(s) 40, 305, 414, 428, 744, 799, 942, 1054
AsuII TTCGAA 1 cut(s) 993
AvaI CYCGRG 3 cut(s) 187, 740, 763
AvaII GGWCC 6 cut(s) 414, 428, 744, 799, 942, 1054
BaeI ACNNNNGTAYC 2 cut(s) 175, 208
BamHI GGATCC 1 cut(s) 917
BanII GRGCYC 2 cut(s) 1094, 1176
BauI CACGAG 1 cut(s) 1175
BbsI GAAGAC 1 cut(s) 550
Bbv12I GWGCWC 2 cut(s) 1094, 1176
BbvI GCAGC 2 cut(s) 575, 739
BccI CCATC 4 cut(s) 97, 512, 762, 997
BceAI ACGGC 4 cut(s) 148, 263, 779, 1010
BcgI CGANNNNNNTGC 2 cut(s) 825, 859
BciT130I CCWGG 2 cut(s) 424, 871
BciVI GTATCC 1 cut(s) 203
BclI TGATCA 1 cut(s) 907
BcoDI GTCTC 3 cut(s) 427, 743, 973
BfoI RGCGCY 2 cut(s) 339, 491
BfuI GTATCC 1 cut(s) 203
BglI GCCNNNNNGGC 1 cut(s) 546
BisI GCNGC 9 cut(s) 61, 78, 81, 84, 378, 491, 589, 753, 792
BlsI GCNGC 9 cut(s) 62, 79, 82, 85, 379, 492, 590, 754, 793
Bme18I GGWCC 6 cut(s) 414, 428, 744, 799, 942, 1054
BmeT110I CYCGRG 3 cut(s) 187, 740, 763
BmgBI CACGTC 1 cut(s) 46
BmgT120I GGNCC 8 cut(s) 40, 305, 414, 428, 744, 799, 942, 1054
BmiI GGNNCC 5 cut(s) 307, 429, 725, 745, 919
BmrI ACTGGG 2 cut(s) 548, 941
BmsI GCATC 2 cut(s) 338, 666
BmuI ACTGGG 2 cut(s) 548, 941
BoxI GACNNNNGTC 1 cut(s) 735
BpiI GAAGAC 1 cut(s) 550
BpmI CTGGAG 1 cut(s) 802
Bpu14I TTCGAA 1 cut(s) 993
BpuEI CTTGAG 2 cut(s) 335, 1031
BsaBI GATNNNNATC 1 cut(s) 503
BsaHI GRCGYC 2 cut(s) 9, 789
BsaI GGTCTC 2 cut(s) 427, 743
BsaJI CCNNGG 7 cut(s) 237, 307, 423, 795, 869, 1095, 1167
BsaWI WCCGGW 2 cut(s) 746, 1056
Bse118I RCCGGY 6 cut(s) 26, 50, 290, 545, 1056, 1150
Bse1I ACTGG 3 cut(s) 554, 936, 1200
Bse3DI GCAATG 1 cut(s) 514
Bse8I GATNNNNATC 1 cut(s) 503
BseAI TCCGGA 1 cut(s) 746
BseBI CCWGG 2 cut(s) 424, 871
BseDI CCNNGG 7 cut(s) 237, 307, 423, 795, 869, 1095, 1167
BseGI GGATG 3 cut(s) 329, 657, 827
BseJI GATNNNNATC 1 cut(s) 503
BseMI GCAATG 1 cut(s) 514
BseNI ACTGG 3 cut(s) 554, 936, 1200
BsePI GCGCGC 1 cut(s) 325
BseRI GAGGAG 1 cut(s) 128
BseXI GCAGC 2 cut(s) 575, 739
Bsh1236I CGCG 9 cut(s) 234, 327, 380, 621, 707, 718, 980, 1131, 1133
Bsh1285I CGRYCG 2 cut(s) 16, 375
BshTI ACCGGT 1 cut(s) 1056
BsiEI CGRYCG 2 cut(s) 16, 375
BsiHKAI GWGCWC 2 cut(s) 1094, 1176
BsiHKCI CYCGRG 3 cut(s) 187, 740, 763
BsiWI CGTACG 1 cut(s) 124
BslFI GGGAC 1 cut(s) 1150
BsmAI GTCTC 3 cut(s) 427, 743, 973
BsmBI CGTCTC 1 cut(s) 973
BsmFI GGGAC 1 cut(s) 1150
BsmI GAATGC 1 cut(s) 257
Bso31I GGTCTC 2 cut(s) 427, 743
BsoBI CYCGRG 3 cut(s) 187, 740, 763
Bsp119I TTCGAA 1 cut(s) 993
Bsp1286I GDGCHC 2 cut(s) 1094, 1176
Bsp13I TCCGGA 1 cut(s) 746
Bsp143I GATC 7 cut(s) 13, 372, 498, 579, 598, 907, 917
BspEI TCCGGA 1 cut(s) 746
BspFNI CGCG 9 cut(s) 234, 327, 380, 621, 707, 718, 980, 1131, 1133
BspLI GGNNCC 5 cut(s) 307, 429, 725, 745, 919
BspPI GGATC 5 cut(s) 493, 587, 606, 912, 925
BspQI GCTCTTC 2 cut(s) 847, 1044
BspT104I TTCGAA 1 cut(s) 993
BspTNI GGTCTC 2 cut(s) 427, 743
BsrDI GCAATG 1 cut(s) 514
BsrFI RCCGGY 6 cut(s) 26, 50, 290, 545, 1056, 1150
BsrI ACTGG 3 cut(s) 554, 936, 1200
BssAI RCCGGY 6 cut(s) 26, 50, 290, 545, 1056, 1150
BssECI CCNNGG 7 cut(s) 237, 307, 423, 795, 869, 1095, 1167
BssHII GCGCGC 1 cut(s) 325
BssMI GATC 7 cut(s) 13, 372, 498, 579, 598, 907, 917
BssNI GRCGYC 2 cut(s) 9, 789
BssSI CACGAG 1 cut(s) 1175
Bst2BI CACGAG 1 cut(s) 1175
Bst2UI CCWGG 2 cut(s) 424, 871
Bst4CI ACNGT 2 cut(s) 438, 803
Bst6I CTCTTC 2 cut(s) 847, 1044
BstACI GRCGYC 2 cut(s) 9, 789
BstAPI GCANNNNNTGC 1 cut(s) 537
BstBI TTCGAA 1 cut(s) 993
BstC8I GCNNGC 7 cut(s) 52, 232, 292, 327, 340, 547, 838
BstDSI CCRYGG 1 cut(s) 795
BstF5I GGATG 3 cut(s) 329, 657, 827
BstFNI CGCG 9 cut(s) 234, 327, 380, 621, 707, 718, 980, 1131, 1133
BstH2I RGCGCY 2 cut(s) 339, 491
BstHHI GCGC 8 cut(s) 236, 327, 329, 338, 490, 621, 720, 1133
BstKTI GATC 7 cut(s) 16, 375, 501, 582, 601, 910, 920
BstMAI GTCTC 3 cut(s) 427, 743, 973
BstMBI GATC 7 cut(s) 13, 372, 498, 579, 598, 907, 917
BstMCI CGRYCG 2 cut(s) 16, 375
BstNI CCWGG 2 cut(s) 424, 871
BstNSI RCATGY 1 cut(s) 840
BstPAI GACNNNNGTC 1 cut(s) 735
BstUI CGCG 9 cut(s) 234, 327, 380, 621, 707, 718, 980, 1131, 1133
BstV1I GCAGC 2 cut(s) 575, 739
BstV2I GAAGAC 1 cut(s) 550
BstX2I RGATCY 3 cut(s) 579, 598, 917
BstYI RGATCY 3 cut(s) 579, 598, 917
BsuI GTATCC 1 cut(s) 203
BtgI CCRYGG 1 cut(s) 795
BtrI CACGTC 1 cut(s) 46
BtsCI GGATG 3 cut(s) 329, 657, 827
Cac8I GCNNGC 7 cut(s) 52, 232, 292, 327, 340, 547, 838
CfoI GCGC 8 cut(s) 236, 327, 329, 338, 490, 621, 720, 1133
Cfr10I RCCGGY 6 cut(s) 26, 50, 290, 545, 1056, 1150
Cfr13I GGNCC 8 cut(s) 40, 305, 414, 428, 744, 799, 942, 1054
CpoI CGGWCCG 1 cut(s) 1054
CseI GACGC 4 cut(s) 797, 969, 1043, 1118
Csp6I GTAC 2 cut(s) 125, 901
CspAI ACCGGT 1 cut(s) 1056
CspI CGGWCCG 1 cut(s) 1054
CviAII CATG 2 cut(s) 837, 1009
CviQI GTAC 2 cut(s) 125, 901
DpnI GATC 7 cut(s) 15, 374, 500, 581, 600, 909, 919
DpnII GATC 7 cut(s) 13, 372, 498, 579, 598, 907, 917
EaeI YGGCCR 2 cut(s) 1080, 1197
Eam1104I CTCTTC 2 cut(s) 847, 1044
EarI CTCTTC 2 cut(s) 847, 1044
EciI GGCGGA 5 cut(s) 58, 173, 277, 682, 1067
Ecl136II GAGCTC 2 cut(s) 1092, 1174
Eco147I AGGCCT 1 cut(s) 356
Eco24I GRGCYC 2 cut(s) 1094, 1176
Eco31I GGTCTC 2 cut(s) 427, 743
Eco32I GATATC 1 cut(s) 964
Eco47I GGWCC 6 cut(s) 414, 428, 744, 799, 942, 1054
Eco53kI GAGCTC 2 cut(s) 1092, 1174
Eco88I CYCGRG 3 cut(s) 187, 740, 763
EcoICRI GAGCTC 2 cut(s) 1092, 1174
EcoRI GAATTC 1 cut(s) 224
EcoRII CCWGG 2 cut(s) 422, 869
EcoRV GATATC 1 cut(s) 964
EcoT38I GRGCYC 2 cut(s) 1094, 1176
Esp3I CGTCTC 1 cut(s) 973
FaeI CATG 2 cut(s) 840, 1012
FaiI YATR 4 cut(s) 145, 838, 956, 1010
FaqI GGGAC 1 cut(s) 1150
FatI CATG 2 cut(s) 836, 1008
FauI CCCGC 3 cut(s) 239, 584, 929
FbaI TGATCA 1 cut(s) 907
FblI GTMKAC 3 cut(s) 6, 567, 894
Fnu4HI GCNGC 9 cut(s) 61, 78, 81, 84, 378, 491, 589, 753, 792
FokI GGATG 3 cut(s) 316, 644, 814
FriOI GRGCYC 2 cut(s) 1094, 1176
Fsp4HI GCNGC 9 cut(s) 61, 78, 81, 84, 378, 491, 589, 753, 792
GlaI GCGC 8 cut(s) 235, 326, 328, 337, 489, 620, 719, 1132
GluI GCNGC 9 cut(s) 61, 78, 81, 84, 378, 491, 589, 753, 792
GsuI CTGGAG 1 cut(s) 802
HaeII RGCGCY 2 cut(s) 339, 491
HgaI GACGC 4 cut(s) 797, 969, 1043, 1118
HhaI GCGC 8 cut(s) 236, 327, 329, 338, 490, 621, 720, 1133
Hin1I GRCGYC 2 cut(s) 9, 789
Hin1II CATG 2 cut(s) 840, 1012
Hin6I GCGC 8 cut(s) 234, 325, 327, 336, 488, 619, 718, 1131
HinP1I GCGC 8 cut(s) 234, 325, 327, 336, 488, 619, 718, 1131
HincII GTYRAC 3 cut(s) 7, 568, 895
HindII GTYRAC 3 cut(s) 7, 568, 895
HinfI GANTC 9 cut(s) 574, 623, 644, 878, 947, 1067, 1119, 1185, 1202
Hpy166II GTNNAC 4 cut(s) 7, 568, 799, 895
Hpy188III TCNNGA 5 cut(s) 266, 370, 747, 781, 1189
Hpy8I GTNNAC 4 cut(s) 7, 568, 799, 895
Hpy99I CGWCG 9 cut(s) 11, 14, 50, 305, 569, 572, 791, 807, 899
HpyAV CCTTC 2 cut(s) 989, 1132
HpyCH4III ACNGT 2 cut(s) 438, 803
HpyCH4IV ACGT 2 cut(s) 9, 45
HpyCH4V TGCA 2 cut(s) 531, 657
HpySE526I ACGT 2 cut(s) 9, 45
Hsp92I GRCGYC 2 cut(s) 9, 789
Hsp92II CATG 2 cut(s) 840, 1012
HspAI GCGC 8 cut(s) 234, 325, 327, 336, 488, 619, 718, 1131
Kpn2I TCCGGA 1 cut(s) 746
KroI GCCGGC 3 cut(s) 50, 290, 545
KroNI GCCGGC 3 cut(s) 52, 292, 547
Ksp22I TGATCA 1 cut(s) 907
Kzo9I GATC 7 cut(s) 13, 372, 498, 579, 598, 907, 917
LguI GCTCTTC 2 cut(s) 847, 1044
LmnI GCTCC 8 cut(s) 680, 723, 749, 783, 1077, 1089, 1097, 1171
Lsp1109I GCAGC 2 cut(s) 575, 739
LweI GCATC 2 cut(s) 338, 666
MaeII ACGT 2 cut(s) 9, 45
MalI GATC 7 cut(s) 15, 374, 500, 581, 600, 909, 919
MboI GATC 7 cut(s) 13, 372, 498, 579, 598, 907, 917
MboII GAAGA 9 cut(s) 499, 550, 553, 574, 604, 834, 1031, 1156, 1168
MflI RGATCY 3 cut(s) 579, 598, 917
MhlI GDGCHC 2 cut(s) 1094, 1176
MluCI AATT 3 cut(s) 224, 393, 1123
MlyI GAGTC 6 cut(s) 632, 638, 887, 941, 1061, 1211
MmeI TCCRAC 8 cut(s) 465, 576, 630, 666, 672, 855, 969, 1011
MroI TCCGGA 1 cut(s) 746
MroNI GCCGGC 3 cut(s) 50, 290, 545
MseI TTAA 1 cut(s) 180
Mva1269I GAATGC 1 cut(s) 257
MvaI CCWGG 2 cut(s) 424, 871
MvnI CGCG 9 cut(s) 234, 327, 380, 621, 707, 718, 980, 1131, 1133
NaeI GCCGGC 3 cut(s) 52, 292, 547
NdeII GATC 7 cut(s) 13, 372, 498, 579, 598, 907, 917
NgoMIV GCCGGC 3 cut(s) 50, 290, 545
NlaIII CATG 2 cut(s) 840, 1012
NlaIV GGNNCC 5 cut(s) 307, 429, 725, 745, 919
NmeAIII GCCGAG 2 cut(s) 262, 268
NspI RCATGY 1 cut(s) 840
NspV TTCGAA 1 cut(s) 993
PaeI GCATGC 1 cut(s) 840
PauI GCGCGC 1 cut(s) 325
PceI AGGCCT 1 cut(s) 356
PciSI GCTCTTC 2 cut(s) 847, 1044
PcsI WCGNNNNNNNCGW 3 cut(s) 234, 881, 977
PctI GAATGC 1 cut(s) 257
PdiI GCCGGC 3 cut(s) 52, 292, 547
PfeI GAWTC 3 cut(s) 574, 1119, 1185
Pfl23II CGTACG 1 cut(s) 124
PflMI CCANNNNNTGG 1 cut(s) 423
PinAI ACCGGT 1 cut(s) 1056
PkrI GCNGC 9 cut(s) 62, 79, 82, 85, 379, 492, 590, 754, 793
Ple19I CGATCG 2 cut(s) 16, 375
PleI GAGTC 6 cut(s) 631, 638, 886, 941, 1061, 1210
PpsI GAGTC 6 cut(s) 631, 638, 886, 941, 1061, 1210
PshAI GACNNNNGTC 1 cut(s) 735
Psp124BI GAGCTC 2 cut(s) 1094, 1176
Psp6I CCWGG 2 cut(s) 422, 869
PspGI CCWGG 2 cut(s) 422, 869
PspLI CGTACG 1 cut(s) 124
PspN4I GGNNCC 5 cut(s) 307, 429, 725, 745, 919
PspPI GGNCC 8 cut(s) 40, 305, 414, 428, 744, 799, 942, 1054
PsuI RGATCY 3 cut(s) 579, 598, 917
PteI GCGCGC 1 cut(s) 325
PvuI CGATCG 2 cut(s) 16, 375
RsaI GTAC 2 cut(s) 126, 902
RsaNI GTAC 2 cut(s) 125, 901
Rsr2I CGGWCCG 1 cut(s) 1054
RsrII CGGWCCG 1 cut(s) 1054
SacI GAGCTC 2 cut(s) 1094, 1176
SalI GTCGAC 3 cut(s) 5, 566, 893
SapI GCTCTTC 2 cut(s) 847, 1044
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 9 cut(s) 61, 78, 81, 84, 378, 491, 589, 753, 792
Sau3AI GATC 7 cut(s) 13, 372, 498, 579, 598, 907, 917
Sau96I GGNCC 8 cut(s) 40, 305, 414, 428, 744, 799, 942, 1054
SchI GAGTC 6 cut(s) 632, 638, 887, 941, 1061, 1211
SduI GDGCHC 2 cut(s) 1094, 1176
SfaNI GCATC 2 cut(s) 338, 666
SfuI TTCGAA 1 cut(s) 993
SgrDI CGTCGACG 1 cut(s) 566
SinI GGWCC 6 cut(s) 414, 428, 744, 799, 942, 1054
SmlI CTYRAG 2 cut(s) 350, 1046
SmoI CTYRAG 2 cut(s) 350, 1046
SphI GCATGC 1 cut(s) 840
Sse9I AATT 3 cut(s) 224, 393, 1123
SseBI AGGCCT 1 cut(s) 356
SstI GAGCTC 2 cut(s) 1094, 1176
StuI AGGCCT 1 cut(s) 356
TaaI ACNGT 2 cut(s) 438, 803
TaiI ACGT 2 cut(s) 12, 48
TasI AATT 3 cut(s) 224, 393, 1123
TatI WGTACW 1 cut(s) 900
TauI GCSGC 7 cut(s) 63, 80, 83, 86, 380, 493, 794
TfiI GAWTC 3 cut(s) 574, 1119, 1185
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TseI GCWGC 2 cut(s) 588, 752
TspGWI ACGGA 2 cut(s) 623, 667
Van91I CCANNNNNTGG 1 cut(s) 423
VpaK11BI GGWCC 6 cut(s) 414, 428, 744, 799, 942, 1054
XapI RAATTY 1 cut(s) 224
XceI RCATGY 1 cut(s) 840
XmiI GTMKAC 3 cut(s) 6, 567, 894
ZraI GACGTC 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.