Rh2BG190000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0014002
Physical Location & Seq
Forward (+)
17076526 .. 17076741
216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG190000.1

Sequence Viewer

Length: 216 bp
ATGGTCATGTTGGACAACCAAGCCGTGCTGGACGCTCTGCTGCTCAAAGCGGACCGGTTCTCGGACTCGCTCCGAATGGCCGGGTGGAGCTCCGAGGAAGTATCCGACGCGCTGGGTTTCAATTTTCGCGCGGAGAAGGAGAAGAAACCGGCGAAGAAGCTGTCCCCGGAGCTCGTGGAAAGAATCGGGAAACTGGCCGAGTCGGTTTCCCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.92

Weight (kDa)

6.23

Isoelectric Point (pI)

34.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014002)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50340 AT5G67020
fragaria_vesca FvH4_1g16070
malus_domestica MD02G1172200.v1.1 MD15G1284400.v1.1
prunus_persica Prupe.7G133200_v2.0.a1
pyrus_communis pycom02g13880 pycom15g24700 pycom15g24710
rosa_chinensis RchiOBHm_Chr2g0105691
rosa_laevigata RLG00000017449
rosa_rugosa Rorug02G0129200
rosa_samantha Rh2AG180900 Rh2BG190000 Rh2CG185100 Rh2DG186900
rosa_wichuraiana Rw2G014140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 110, 129, 131
AciI CCGC 2 cut(s) 50, 131
AcoI YGGCCR 2 cut(s) 78, 195
AfiI CCNNNNNNNGG 1 cut(s) 61
AgeI ACCGGT 1 cut(s) 54
AgsI TTSAA 1 cut(s) 121
AluBI AGCT 3 cut(s) 90, 160, 172
AluI AGCT 3 cut(s) 90, 160, 172
Alw21I GWGCWC 2 cut(s) 92, 174
AoxI GGCC 2 cut(s) 78, 195
ApeKI GCWGC 1 cut(s) 40
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AsiGI ACCGGT 1 cut(s) 54
AspLEI GCGC 2 cut(s) 112, 131
AspS9I GGNCC 1 cut(s) 52
AsuC2I CCSGG 3 cut(s) 82, 167, 211
AvaII GGWCC 1 cut(s) 52
BanII GRGCYC 2 cut(s) 92, 174
BauI CACGAG 1 cut(s) 173
Bbv12I GWGCWC 2 cut(s) 92, 174
BbvI GCAGC 1 cut(s) 27
BceAI ACGGC 1 cut(s) 8
BciVI GTATCC 1 cut(s) 112
BcnI CCSGG 3 cut(s) 82, 167, 211
BfuI GTATCC 1 cut(s) 112
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
Bme1390I CCNGG 3 cut(s) 82, 167, 211
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 52
BmrFI CCNGG 3 cut(s) 82, 167, 211
BpuMI CCSGG 3 cut(s) 82, 167, 211
BsaJI CCNNGG 2 cut(s) 93, 165
BsaWI WCCGGW 1 cut(s) 54
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse118I RCCGGY 2 cut(s) 54, 148
Bse1I ACTGG 1 cut(s) 198
BseDI CCNNGG 2 cut(s) 93, 165
BseLI CCNNNNNNNGG 1 cut(s) 61
BseNI ACTGG 1 cut(s) 198
BseXI GCAGC 1 cut(s) 27
BseYI CCCAGC 1 cut(s) 112
Bsh1236I CGCG 3 cut(s) 110, 129, 131
BshFI GGCC 2 cut(s) 80, 197
BshTI ACCGGT 1 cut(s) 54
BsiHKAI GWGCWC 2 cut(s) 92, 174
BsiSI CCGG 5 cut(s) 55, 81, 149, 167, 211
BslFI GGGAC 1 cut(s) 148
BslI CCNNNNNNNGG 1 cut(s) 61
BsmFI GGGAC 1 cut(s) 148
BsnI GGCC 2 cut(s) 80, 197
Bsp1286I GDGCHC 2 cut(s) 92, 174
BspACI CCGC 2 cut(s) 50, 131
BspANI GGCC 2 cut(s) 80, 197
BspFNI CGCG 3 cut(s) 110, 129, 131
BsrFI RCCGGY 2 cut(s) 54, 148
BsrI ACTGG 1 cut(s) 198
BssAI RCCGGY 2 cut(s) 54, 148
BssECI CCNNGG 2 cut(s) 93, 165
BssSI CACGAG 1 cut(s) 173
Bst2BI CACGAG 1 cut(s) 173
BstFNI CGCG 3 cut(s) 110, 129, 131
BstHHI GCGC 2 cut(s) 112, 131
BstSCI CCNGG 3 cut(s) 80, 165, 209
BstUI CGCG 3 cut(s) 110, 129, 131
BstV1I GCAGC 1 cut(s) 27
BsuI GTATCC 1 cut(s) 112
BsuRI GGCC 2 cut(s) 80, 197
CfoI GCGC 2 cut(s) 112, 131
Cfr10I RCCGGY 2 cut(s) 54, 148
Cfr13I GGNCC 1 cut(s) 52
CpoI CGGWCCG 1 cut(s) 52
CseI GACGC 2 cut(s) 41, 116
CspAI ACCGGT 1 cut(s) 54
CspI CGGWCCG 1 cut(s) 52
CviAII CATG 1 cut(s) 7
CviJI RGCY 6 cut(s) 23, 80, 90, 160, 172, 197
CviKI_1 RGCY 6 cut(s) 23, 80, 90, 160, 172, 197
EaeI YGGCCR 2 cut(s) 78, 195
Ecl136II GAGCTC 2 cut(s) 90, 172
Eco24I GRGCYC 2 cut(s) 92, 174
Eco47I GGWCC 1 cut(s) 52
Eco53kI GAGCTC 2 cut(s) 90, 172
EcoICRI GAGCTC 2 cut(s) 90, 172
EcoT38I GRGCYC 2 cut(s) 92, 174
FaeI CATG 1 cut(s) 10
FaiI YATR 1 cut(s) 8
FaqI GGGAC 1 cut(s) 148
FatI CATG 1 cut(s) 6
Fnu4HI GCNGC 1 cut(s) 41
FriOI GRGCYC 2 cut(s) 92, 174
Fsp4HI GCNGC 1 cut(s) 41
GlaI GCGC 2 cut(s) 111, 130
GluI GCNGC 1 cut(s) 41
GsaI CCCAGC 1 cut(s) 116
HaeIII GGCC 2 cut(s) 80, 197
HapII CCGG 5 cut(s) 55, 81, 149, 167, 211
HgaI GACGC 2 cut(s) 41, 116
HhaI GCGC 2 cut(s) 112, 131
Hin1II CATG 1 cut(s) 10
Hin6I GCGC 2 cut(s) 110, 129
HinP1I GCGC 2 cut(s) 110, 129
HinfI GANTC 3 cut(s) 65, 183, 200
HpaII CCGG 5 cut(s) 55, 81, 149, 167, 211
Hpy188I TCNGA 4 cut(s) 64, 74, 94, 106
Hpy188III TCNNGA 1 cut(s) 187
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 1 cut(s) 130
Hsp92II CATG 1 cut(s) 10
HspAI GCGC 2 cut(s) 110, 129
LmnI GCTCC 4 cut(s) 75, 87, 95, 169
LpnPI CCDG 7 cut(s) 14, 68, 94, 98, 162, 179, 180
Lsp1109I GCAGC 1 cut(s) 27
MboII GAAGA 2 cut(s) 154, 166
MhlI GDGCHC 2 cut(s) 92, 174
MluCI AATT 1 cut(s) 121
MlyI GAGTC 2 cut(s) 59, 209
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 1 cut(s) 88
MspI CCGG 5 cut(s) 55, 81, 149, 167, 211
MspR9I CCNGG 3 cut(s) 82, 167, 211
MvnI CGCG 3 cut(s) 110, 129, 131
NciI CCSGG 3 cut(s) 82, 167, 211
NlaIII CATG 1 cut(s) 10
PfeI GAWTC 1 cut(s) 183
PinAI ACCGGT 1 cut(s) 54
PkrI GCNGC 1 cut(s) 42
PleI GAGTC 2 cut(s) 59, 208
PpsI GAGTC 2 cut(s) 59, 208
Psp124BI GAGCTC 2 cut(s) 92, 174
PspFI CCCAGC 1 cut(s) 112
PspPI GGNCC 1 cut(s) 52
Rsr2I CGGWCCG 1 cut(s) 52
RsrII CGGWCCG 1 cut(s) 52
SacI GAGCTC 2 cut(s) 92, 174
SatI GCNGC 1 cut(s) 41
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 2 cut(s) 59, 209
ScrFI CCNGG 3 cut(s) 82, 167, 211
SduI GDGCHC 2 cut(s) 92, 174
SetI ASST 3 cut(s) 92, 162, 174
SinI GGWCC 1 cut(s) 52
Sse9I AATT 1 cut(s) 121
SsiI CCGC 2 cut(s) 50, 131
SstI GAGCTC 2 cut(s) 92, 174
StyD4I CCNGG 3 cut(s) 80, 165, 209
TasI AATT 1 cut(s) 121
TfiI GAWTC 1 cut(s) 183
TseI GCWGC 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.