pycom15g24700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0014002
Physical Location & Seq
Forward (+)
18969321 .. 18970729
1409 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g24700.2

Sequence Viewer

Length: 954 bp
ATGTCTAAAATCATATATCGAAGAATAATCCATCTAACACATCACAAACGACTAGGCTTAGTTAAATACGGCTATAAATACACAATCTTGCTTTTCACAACCCAAGTGTTTCATCTTCTCTCCCACCAAAAGGCGCTCCCACTCGGCACCTCCTCCCCTCCTCTCCTCCACTCCCGTCCCCTCCCACACACTTCCTACATTTTTTCACTTCACACAGACCATTTCACAACACACGCCACCTGCATTTCATATCTCATCCGATTCCCCGCTCACTTCCGATTCACAATGGTCGACGTCGATCGGAGAATGACCGGCCTCAACCCGGGTCACGTAGCCGGCCTTCGCCGCCTCTCCGCCCGAGCCGCCGCCGGCCCACCAACCCCAACAACCCCCGCAAAATCCACTCTTCCCGTACGGAACGGCCTTCTTTCCTTCTCCTCTTTAGCTGACAACGTCATATCCCACCTCAAAAGCTCCGGTTTCCAGGTCCAGCCGGGTCTATCCGAATCCGAGTTCGCCCGGGCTGAAGCGGAGTTCGGCTTCGTATTCCCTCCAGACCTCAGAGCCATTCTCTCAGCCGGATTGCCTGTCGGCCCCGGTTTTCCCGACTGGAGAGCCGCCGGTGCCCGCCTCGGTCTCAAGGCCTCGCTCGACCTCCCGATCGCTGCGATTTCGTTCCAAATCGCAAGGAACACCCTCTGGTCCAAATCCTGGGGTCTGAGACCGGCCGACCCGGAAAAGGCCTTGCGGGTCGCGAGAACTGCTTTGAAGAGAGCCCCGCTGCTGATACCAATTTTCAACCATTGCTACATTCCGTGCAACCCCTGTTTGGCGGGGAACCCCATCTTCTACGTCGACGAGAATCGGATCGTTCTGTTGCGGCTTGGATCTATCCGATTTCTTCGAGCGCGAGTCTCTGTTTCGGAAATCGGAGACCGACCCGTATATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

318

Amino Acids

35.15

Weight (kDa)

10.51

Isoelectric Point (pI)

37.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014002)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50340 AT5G67020
fragaria_vesca FvH4_1g16070
malus_domestica MD02G1172200.v1.1 MD15G1284400.v1.1
prunus_persica Prupe.7G133200_v2.0.a1
pyrus_communis pycom02g13880 pycom15g24700 pycom15g24710
rosa_chinensis RchiOBHm_Chr2g0105691
rosa_laevigata RLG00000017449
rosa_rugosa Rorug02G0129200
rosa_samantha Rh2AG180900 Rh2BG190000 Rh2CG185100 Rh2DG186900
rosa_wichuraiana Rw2G014140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 248
AatII GACGTC 1 cut(s) 297
Acc36I ACCTGC 1 cut(s) 248
AccB1I GGYRCC 2 cut(s) 146, 623
AccB7I CCANNNNNTGG 1 cut(s) 711
AccBSI CCGCTC 1 cut(s) 269
AccI GTMKAC 2 cut(s) 291, 855
AccII CGCG 2 cut(s) 755, 910
AclWI GGATC 2 cut(s) 875, 895
AcoI YGGCCR 1 cut(s) 726
AcuI CTGAAG 1 cut(s) 546
AcyI GRCGYC 1 cut(s) 294
AfaI GTAC 1 cut(s) 414
AfiI CCNNNNNNNGG 5 cut(s) 130, 322, 711, 739, 829
AgsI TTSAA 2 cut(s) 769, 799
AjnI CCWGG 2 cut(s) 483, 710
AluBI AGCT 2 cut(s) 446, 474
AluI AGCT 2 cut(s) 446, 474
Alw26I GTCTC 4 cut(s) 641, 715, 919, 927
AlwI GGATC 2 cut(s) 875, 895
Ama87I CYCGRG 3 cut(s) 322, 357, 519
AoxI GGCC 8 cut(s) 313, 337, 370, 421, 592, 642, 726, 741
ApeKI GCWGC 2 cut(s) 665, 781
AspLEI GCGC 2 cut(s) 136, 910
AspS9I GGNCC 4 cut(s) 371, 487, 593, 702
AsuC2I CCSGG 7 cut(s) 323, 324, 495, 520, 521, 597, 734
AvaI CYCGRG 3 cut(s) 322, 357, 519
AvaII GGWCC 2 cut(s) 487, 702
BaeGI GKGCMC 1 cut(s) 628
BanI GGYRCC 2 cut(s) 146, 623
BanII GRGCYC 1 cut(s) 778
BarI GAAGNNNNNNTAC 2 cut(s) 324, 356
BbvI GCAGC 2 cut(s) 652, 768
BccI CCATC 2 cut(s) 39, 851
BceAI ACGGC 2 cut(s) 85, 436
BciT130I CCWGG 2 cut(s) 485, 712
BcnI CCSGG 7 cut(s) 323, 324, 495, 520, 521, 597, 734
BcoDI GTCTC 4 cut(s) 641, 715, 919, 927
BfaI CTAG 1 cut(s) 53
BfoI RGCGCY 1 cut(s) 137
BfuAI ACCTGC 1 cut(s) 248
BisI GCNGC 7 cut(s) 346, 363, 366, 618, 666, 782, 881
BlsI GCNGC 7 cut(s) 347, 364, 367, 619, 667, 783, 882
Bme1390I CCNGG 9 cut(s) 323, 324, 485, 495, 520, 521, 597, 712, 734
Bme18I GGWCC 2 cut(s) 487, 702
BmeT110I CYCGRG 3 cut(s) 322, 357, 519
BmgT120I GGNCC 4 cut(s) 371, 487, 593, 702
BmiI GGNNCC 4 cut(s) 148, 595, 625, 839
BmrFI CCNGG 9 cut(s) 323, 324, 485, 495, 520, 521, 597, 712, 734
BplI GAGNNNNNCTC 2 cut(s) 555, 587
BpmI CTGGAG 2 cut(s) 537, 631
BpuEI CTTGAG 1 cut(s) 623
BpuMI CCSGG 7 cut(s) 323, 324, 495, 520, 521, 597, 734
BsaAI YACGTR 1 cut(s) 331
BsaHI GRCGYC 1 cut(s) 294
BsaI GGTCTC 3 cut(s) 641, 715, 927
BsaJI CCNNGG 5 cut(s) 322, 519, 595, 631, 711
BsaWI WCCGGW 1 cut(s) 476
Bsc4I CCNNNNNNNGG 5 cut(s) 130, 322, 711, 739, 829
Bse118I RCCGGY 5 cut(s) 311, 335, 368, 620, 724
Bse1I ACTGG 1 cut(s) 614
Bse3DI GCAATG 1 cut(s) 802
BseBI CCWGG 2 cut(s) 485, 712
BseDI CCNNGG 5 cut(s) 322, 519, 595, 631, 711
BseGI GGATG 1 cut(s) 255
BseLI CCNNNNNNNGG 5 cut(s) 130, 322, 711, 739, 829
BseMI GCAATG 1 cut(s) 802
BseMII CTCAG 3 cut(s) 574, 588, 710
BseNI ACTGG 1 cut(s) 614
BseRI GAGGAG 4 cut(s) 142, 150, 155, 427
BseSI GKGCMC 1 cut(s) 628
BseX3I CGGCCG 1 cut(s) 726
BseXI GCAGC 2 cut(s) 652, 768
Bsh1236I CGCG 2 cut(s) 755, 910
Bsh1285I CGRYCG 3 cut(s) 301, 663, 729
BshFI GGCC 8 cut(s) 315, 339, 372, 423, 594, 644, 728, 743
BshNI GGYRCC 2 cut(s) 146, 623
BsiEI CGRYCG 3 cut(s) 301, 663, 729
BsiHKCI CYCGRG 3 cut(s) 322, 357, 519
BsiWI CGTACG 1 cut(s) 412
BslFI GGGAC 1 cut(s) 162
BslI CCNNNNNNNGG 5 cut(s) 130, 322, 711, 739, 829
BsmAI GTCTC 4 cut(s) 641, 715, 919, 927
BsmFI GGGAC 1 cut(s) 162
BsnI GGCC 8 cut(s) 315, 339, 372, 423, 594, 644, 728, 743
Bso31I GGTCTC 3 cut(s) 641, 715, 927
BsoBI CYCGRG 3 cut(s) 322, 357, 519
Bsp1286I GDGCHC 2 cut(s) 628, 778
Bsp143I GATC 4 cut(s) 298, 660, 867, 887
Bsp68I TCGCGA 1 cut(s) 755
BspANI GGCC 8 cut(s) 315, 339, 372, 423, 594, 644, 728, 743
BspCNI CTCAG 3 cut(s) 573, 587, 711
BspFNI CGCG 2 cut(s) 755, 910
BspLI GGNNCC 4 cut(s) 148, 595, 625, 839
BspMI ACCTGC 1 cut(s) 248
BspPI GGATC 2 cut(s) 875, 895
BspT107I GGYRCC 2 cut(s) 146, 623
BspTNI GGTCTC 3 cut(s) 641, 715, 927
BsrBI CCGCTC 1 cut(s) 269
BsrDI GCAATG 1 cut(s) 802
BsrFI RCCGGY 5 cut(s) 311, 335, 368, 620, 724
BsrI ACTGG 1 cut(s) 614
BssAI RCCGGY 5 cut(s) 311, 335, 368, 620, 724
BssECI CCNNGG 5 cut(s) 322, 519, 595, 631, 711
BssMI GATC 4 cut(s) 298, 660, 867, 887
BssNI GRCGYC 1 cut(s) 294
Bst2UI CCWGG 2 cut(s) 485, 712
Bst6I CTCTTC 2 cut(s) 411, 764
BstACI GRCGYC 1 cut(s) 294
BstBAI YACGTR 1 cut(s) 331
BstC8I GCNNGC 3 cut(s) 337, 370, 628
BstDEI CTNAG 4 cut(s) 58, 560, 574, 719
BstF5I GGATG 1 cut(s) 255
BstFNI CGCG 2 cut(s) 755, 910
BstH2I RGCGCY 1 cut(s) 137
BstHHI GCGC 2 cut(s) 136, 910
BstKTI GATC 4 cut(s) 301, 663, 870, 890
BstMAI GTCTC 4 cut(s) 641, 715, 919, 927
BstMBI GATC 4 cut(s) 298, 660, 867, 887
BstMCI CGRYCG 3 cut(s) 301, 663, 729
BstMWI GCNNNNNNNGC 4 cut(s) 345, 362, 623, 761
BstNI CCWGG 2 cut(s) 485, 712
BstSCI CCNGG 9 cut(s) 321, 322, 483, 493, 518, 519, 595, 710, 732
BstSLI GKGCMC 1 cut(s) 628
BstUI CGCG 2 cut(s) 755, 910
BstV1I GCAGC 2 cut(s) 652, 768
BstX2I RGATCY 1 cut(s) 887
BstYI RGATCY 1 cut(s) 887
BstZI CGGCCG 1 cut(s) 726
BsuRI GGCC 8 cut(s) 315, 339, 372, 423, 594, 644, 728, 743
BtsCI GGATG 1 cut(s) 255
BtuMI TCGCGA 1 cut(s) 755
BveI ACCTGC 1 cut(s) 248
Cac8I GCNNGC 3 cut(s) 337, 370, 628
CfoI GCGC 2 cut(s) 136, 910
Cfr10I RCCGGY 5 cut(s) 311, 335, 368, 620, 724
Cfr13I GGNCC 4 cut(s) 371, 487, 593, 702
Cfr9I CCCGGG 2 cut(s) 322, 519
Csp6I GTAC 1 cut(s) 413
CviQI GTAC 1 cut(s) 413
DdeI CTNAG 4 cut(s) 58, 560, 574, 719
DpnI GATC 4 cut(s) 300, 662, 869, 889
DpnII GATC 4 cut(s) 298, 660, 867, 887
EaeI YGGCCR 1 cut(s) 726
EagI CGGCCG 1 cut(s) 726
Eam1104I CTCTTC 2 cut(s) 411, 764
EarI CTCTTC 2 cut(s) 411, 764
EciI GGCGGA 1 cut(s) 343
EclXI CGGCCG 1 cut(s) 726
Eco147I AGGCCT 2 cut(s) 644, 743
Eco24I GRGCYC 1 cut(s) 778
Eco31I GGTCTC 3 cut(s) 641, 715, 927
Eco47I GGWCC 2 cut(s) 487, 702
Eco52I CGGCCG 1 cut(s) 726
Eco57I CTGAAG 1 cut(s) 546
Eco88I CYCGRG 3 cut(s) 322, 357, 519
EcoRII CCWGG 2 cut(s) 483, 710
EcoT38I GRGCYC 1 cut(s) 778
FaiI YATR 6 cut(s) 14, 16, 75, 250, 458, 946
FaqI GGGAC 1 cut(s) 162
FauI CCCGC 6 cut(s) 274, 400, 635, 741, 786, 826
FblI GTMKAC 2 cut(s) 291, 855
Fnu4HI GCNGC 7 cut(s) 346, 363, 366, 618, 666, 782, 881
FokI GGATG 1 cut(s) 242
FriOI GRGCYC 1 cut(s) 778
Fsp4HI GCNGC 7 cut(s) 346, 363, 366, 618, 666, 782, 881
FspBI CTAG 1 cut(s) 53
GlaI GCGC 2 cut(s) 135, 909
GluI GCNGC 7 cut(s) 346, 363, 366, 618, 666, 782, 881
GsuI CTGGAG 2 cut(s) 537, 631
HaeII RGCGCY 1 cut(s) 137
HaeIII GGCC 8 cut(s) 315, 339, 372, 423, 594, 644, 728, 743
HhaI GCGC 2 cut(s) 136, 910
Hin1I GRCGYC 1 cut(s) 294
Hin6I GCGC 2 cut(s) 134, 908
HinP1I GCGC 2 cut(s) 134, 908
HincII GTYRAC 2 cut(s) 292, 856
HindII GTYRAC 2 cut(s) 292, 856
HinfI GANTC 5 cut(s) 261, 279, 506, 862, 912
Hpy166II GTNNAC 2 cut(s) 292, 856
Hpy188III TCNNGA 4 cut(s) 554, 605, 658, 754
Hpy8I GTNNAC 2 cut(s) 292, 856
Hpy99I CGWCG 4 cut(s) 296, 299, 857, 860
HpyAV CCTTC 3 cut(s) 350, 434, 442
HpyCH4IV ACGT 4 cut(s) 294, 330, 453, 852
HpyCH4V TGCA 2 cut(s) 243, 819
HpyF10VI GCNNNNNNNGC 4 cut(s) 345, 362, 623, 761
HpyF3I CTNAG 4 cut(s) 58, 560, 574, 719
HpySE526I ACGT 4 cut(s) 294, 330, 453, 852
Hsp92I GRCGYC 1 cut(s) 294
HspAI GCGC 2 cut(s) 134, 908
KroI GCCGGC 2 cut(s) 335, 368
KroNI GCCGGC 2 cut(s) 337, 370
Kzo9I GATC 4 cut(s) 298, 660, 867, 887
LmnI GCTCC 2 cut(s) 141, 479
Lsp1109I GCAGC 2 cut(s) 652, 768
MaeI CTAG 1 cut(s) 53
MaeII ACGT 4 cut(s) 294, 330, 453, 852
MaeIII GTNAC 1 cut(s) 326
MalI GATC 4 cut(s) 300, 662, 869, 889
MbiI CCGCTC 1 cut(s) 269
MboI GATC 4 cut(s) 298, 660, 867, 887
MboII GAAGA 6 cut(s) 33, 107, 398, 781, 838, 893
MflI RGATCY 1 cut(s) 887
MhlI GDGCHC 2 cut(s) 628, 778
MluCI AATT 1 cut(s) 792
MlyI GAGTC 1 cut(s) 921
MroNI GCCGGC 2 cut(s) 335, 368
MseI TTAA 2 cut(s) 63, 952
MspA1I CMGCKG 1 cut(s) 781
MspR9I CCNGG 9 cut(s) 323, 324, 485, 495, 520, 521, 597, 712, 734
MvaI CCWGG 2 cut(s) 485, 712
MvnI CGCG 2 cut(s) 755, 910
MwoI GCNNNNNNNGC 4 cut(s) 345, 362, 623, 761
NaeI GCCGGC 2 cut(s) 337, 370
NciI CCSGG 7 cut(s) 323, 324, 495, 520, 521, 597, 734
NdeII GATC 4 cut(s) 298, 660, 867, 887
NgoMIV GCCGGC 2 cut(s) 335, 368
NlaIV GGNNCC 4 cut(s) 148, 595, 625, 839
NmeAIII GCCGAG 1 cut(s) 123
NmuCI GTSAC 1 cut(s) 326
NruI TCGCGA 1 cut(s) 755
PaqCI CACCTGC 1 cut(s) 248
PceI AGGCCT 2 cut(s) 644, 743
PdiI GCCGGC 2 cut(s) 337, 370
PfeI GAWTC 4 cut(s) 261, 279, 506, 862
Pfl23II CGTACG 1 cut(s) 412
PflFI GACNNNGTC 1 cut(s) 452
PflMI CCANNNNNTGG 1 cut(s) 711
PkrI GCNGC 7 cut(s) 347, 364, 367, 619, 667, 783, 882
Ple19I CGATCG 2 cut(s) 301, 663
PleI GAGTC 1 cut(s) 920
PpsI GAGTC 1 cut(s) 920
Ppu21I YACGTR 1 cut(s) 331
Psp6I CCWGG 2 cut(s) 483, 710
PspGI CCWGG 2 cut(s) 483, 710
PspLI CGTACG 1 cut(s) 412
PspN4I GGNNCC 4 cut(s) 148, 595, 625, 839
PspPI GGNCC 4 cut(s) 371, 487, 593, 702
PsuI RGATCY 1 cut(s) 887
PsyI GACNNNGTC 1 cut(s) 452
PvuI CGATCG 2 cut(s) 301, 663
RruI TCGCGA 1 cut(s) 755
RsaI GTAC 1 cut(s) 414
RsaNI GTAC 1 cut(s) 413
SalI GTCGAC 2 cut(s) 290, 854
SaqAI TTAA 2 cut(s) 63, 952
SatI GCNGC 7 cut(s) 346, 363, 366, 618, 666, 782, 881
Sau3AI GATC 4 cut(s) 298, 660, 867, 887
Sau96I GGNCC 4 cut(s) 371, 487, 593, 702
SchI GAGTC 1 cut(s) 921
ScrFI CCNGG 9 cut(s) 323, 324, 485, 495, 520, 521, 597, 712, 734
SduI GDGCHC 2 cut(s) 628, 778
SgrAI CRCCGGYG 1 cut(s) 620
SgrDI CGTCGACG 1 cut(s) 854
SinI GGWCC 2 cut(s) 487, 702
SmaI CCCGGG 2 cut(s) 324, 521
SmlI CTYRAG 1 cut(s) 638
SmoI CTYRAG 1 cut(s) 638
SrfI GCCCGGGC 1 cut(s) 521
Sse9I AATT 1 cut(s) 792
SseBI AGGCCT 2 cut(s) 644, 743
SspMI CTAG 1 cut(s) 53
StuI AGGCCT 2 cut(s) 644, 743
StyD4I CCNGG 9 cut(s) 321, 322, 483, 493, 518, 519, 595, 710, 732
TaiI ACGT 4 cut(s) 297, 333, 456, 855
TaqI TCGA 6 cut(s) 19, 291, 297, 651, 855, 904
TaqII GACCGA 2 cut(s) 623, 951
TasI AATT 1 cut(s) 792
TauI GCSGC 5 cut(s) 348, 365, 368, 620, 883
TfiI GAWTC 4 cut(s) 261, 279, 506, 862
Tru1I TTAA 2 cut(s) 63, 952
Tru9I TTAA 2 cut(s) 63, 952
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 2 cut(s) 665, 781
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 2 cut(s) 101, 237
TspGWI ACGGA 2 cut(s) 430, 804
TspMI CCCGGG 2 cut(s) 322, 519
Tth111I GACNNNGTC 1 cut(s) 452
Van91I CCANNNNNTGG 1 cut(s) 711
VpaK11BI GGWCC 2 cut(s) 487, 702
XmaI CCCGGG 2 cut(s) 322, 519
XmiI GTMKAC 2 cut(s) 291, 855
XspI CTAG 1 cut(s) 53
ZraI GACGTC 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.