CLK4-associating serine arginine rich
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G36980 AT4G36980 AT4G36980 AT4G36980 |
| fragaria_vesca | FvH4_1g16060 FvH4_1g16060 FvH4_1g16060 FvH4_1g16060 FvH4_1g16060 |
| malus_domestica | MD02G1172000.v1.1 MD02G1172100.v1.1 MD15G1284200.v1.1 MD15G1284300.v1.1 |
| prunus_persica | Prupe.7G133300_v2.0.a1 Prupe.7G133300_v2.0.a1 Prupe.7G133300_v2.0.a1 Prupe.7G133300_v2.0.a1 Prupe.7G133300_v2.0.a1 |
| pyrus_communis | pycom02g13870 pycom15g24690 |
| rosa_chinensis | RchiOBHm_Chr2g0105671 |
| rosa_laevigata | RLG00000017448 |
| rosa_multiflora | Rmu_co7977022.1_g000001 Rmu_sc0001051.1_g000055 |
| rosa_roxburghii | Rroxscaffold_2G00137990 |
| rosa_rugosa | Rorug02G0129200 |
| rosa_samantha | Rh2AG180800 Rh2BG189900 Rh2CG185000 Rh2DG186800 |
| rosa_wichuraiana | Rw2G014130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1163 |
| AarI | CACCTGC | 4 cut(s) | 2701, 2782, 3187, 4094 |
| AatII | GACGTC | 1 cut(s) | 911 |
| AbsI | CCTCGAGG | 1 cut(s) | 4800 |
| Acc36I | ACCTGC | 4 cut(s) | 2701, 2782, 3187, 4094 |
| AccB1I | GGYRCC | 2 cut(s) | 123, 3820 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3305 |
| AccBSI | CCGCTC | 2 cut(s) | 55, 3554 |
| AccI | GTMKAC | 2 cut(s) | 24, 4433 |
| AccII | CGCG | 4 cut(s) | 50, 66, 68, 83 |
| AclWI | GGATC | 9 cut(s) | 880, 1076, 1904, 1916, 1929, 2007, 3096, 4105, 4249 |
| AcoI | YGGCCR | 2 cut(s) | 248, 1006 |
| AcuI | CTGAAG | 8 cut(s) | 939, 1548, 1959, 2691, 2772, 2853, 3717, 3822 |
| AcyI | GRCGYC | 1 cut(s) | 908 |
| AflIII | ACRYGT | 4 cut(s) | 575, 1289, 4146, 4428 |
| AjiI | CACGTC | 2 cut(s) | 193, 3911 |
| AjnI | CCWGG | 6 cut(s) | 1008, 2151, 2319, 3829, 4249, 4384 |
| AleI | CACNNNNGTG | 3 cut(s) | 1785, 4262, 4313 |
| Alw21I | GWGCWC | 2 cut(s) | 48, 948 |
| Alw26I | GTCTC | 6 cut(s) | 262, 3239, 3303, 3975, 4518, 4662 |
| AlwI | GGATC | 9 cut(s) | 880, 1076, 1904, 1916, 1929, 2007, 3096, 4105, 4249 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 1852, 2702, 2783, 4250 |
| Ama87I | CYCGRG | 3 cut(s) | 3084, 4564, 4800 |
| AoxI | GGCC | 9 cut(s) | 248, 408, 426, 471, 1006, 4648, 4690, 4790, 4804 |
| AseI | ATTAAT | 1 cut(s) | 1362 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 3420, 4209, 4491 |
| AspA2I | CCTAGG | 1 cut(s) | 4457 |
| AspLEI | GCGC | 5 cut(s) | 68, 83, 1383, 1878, 2470 |
| AspS9I | GGNCC | 8 cut(s) | 4, 847, 1512, 1973, 2323, 2345, 4556, 4682 |
| AsuC2I | CCSGG | 5 cut(s) | 255, 3818, 4565, 4566, 4694 |
| AvaI | CYCGRG | 3 cut(s) | 3084, 4564, 4800 |
| AvaII | GGWCC | 8 cut(s) | 4, 847, 1512, 1973, 2323, 2345, 4556, 4682 |
| AvrII | CCTAGG | 1 cut(s) | 4457 |
| AxyI | CCTNAGG | 1 cut(s) | 372 |
| BaeGI | GKGCMC | 1 cut(s) | 3910 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2351, 2384 |
| BamHI | GGATCC | 1 cut(s) | 1921 |
| BanI | GGYRCC | 2 cut(s) | 123, 3820 |
| BanII | GRGCYC | 1 cut(s) | 948 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2456, 2488 |
| BbsI | GAAGAC | 4 cut(s) | 1947, 2383, 3144, 3342 |
| Bbv12I | GWGCWC | 2 cut(s) | 48, 948 |
| BbvCI | CCTCAGC | 2 cut(s) | 1761, 1823 |
| BceAI | ACGGC | 4 cut(s) | 94, 268, 1021, 1787 |
| BciT130I | CCWGG | 6 cut(s) | 1010, 2153, 2321, 3831, 4251, 4386 |
| BciVI | GTATCC | 2 cut(s) | 678, 994 |
| BclI | TGATCA | 5 cut(s) | 1471, 1609, 1621, 1680, 4036 |
| BcnI | CCSGG | 5 cut(s) | 255, 3818, 4565, 4566, 4694 |
| BcoDI | GTCTC | 6 cut(s) | 262, 3239, 3303, 3975, 4518, 4662 |
| BfaI | CTAG | 9 cut(s) | 851, 888, 1464, 3618, 3993, 4152, 4176, 4329, 4458 |
| BfmI | CTRYAG | 6 cut(s) | 2259, 2694, 2775, 2856, 4274, 4437 |
| BfuAI | ACCTGC | 4 cut(s) | 2701, 2782, 3187, 4094 |
| BfuI | GTATCC | 2 cut(s) | 678, 994 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 259 |
| BglII | AGATCT | 2 cut(s) | 1614, 3685 |
| BlnI | CCTAGG | 1 cut(s) | 4457 |
| BmcAI | AGTACT | 1 cut(s) | 2474 |
| Bme18I | GGWCC | 8 cut(s) | 4, 847, 1512, 1973, 2323, 2345, 4556, 4682 |
| BmeT110I | CYCGRG | 3 cut(s) | 3084, 4564, 4800 |
| BmgBI | CACGTC | 2 cut(s) | 193, 3911 |
| BmgT120I | GGNCC | 8 cut(s) | 4, 847, 1512, 1973, 2323, 2345, 4556, 4682 |
| BmiI | GGNNCC | 6 cut(s) | 125, 1513, 1923, 2325, 3822, 4383 |
| BmrI | ACTGGG | 3 cut(s) | 2129, 3276, 3531 |
| BmuI | ACTGGG | 3 cut(s) | 2129, 3276, 3531 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3495 |
| BpiI | GAAGAC | 4 cut(s) | 1947, 2383, 3144, 3342 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1761, 1823 |
| BpuEI | CTTGAG | 2 cut(s) | 615, 1412 |
| BpuMI | CCSGG | 5 cut(s) | 255, 3818, 4565, 4566, 4694 |
| BsaAI | YACGTR | 2 cut(s) | 1030, 1292 |
| BsaHI | GRCGYC | 1 cut(s) | 908 |
| BsaI | GGTCTC | 2 cut(s) | 262, 4518 |
| BsaWI | WCCGGW | 1 cut(s) | 788 |
| Bse118I | RCCGGY | 1 cut(s) | 31 |
| Bse21I | CCTNAGG | 1 cut(s) | 372 |
| Bse3DI | GCAATG | 2 cut(s) | 1725, 3310 |
| BseBI | CCWGG | 6 cut(s) | 1010, 2153, 2321, 3831, 4251, 4386 |
| BseMI | GCAATG | 2 cut(s) | 1725, 3310 |
| BseMII | CTCAG | 6 cut(s) | 152, 1105, 1649, 1752, 1814, 2508 |
| BseRI | GAGGAG | 7 cut(s) | 320, 795, 4536, 4605, 4680, 4788, 4791 |
| BseSI | GKGCMC | 1 cut(s) | 3910 |
| BseX3I | CGGCCG | 1 cut(s) | 248 |
| BseYI | CCCAGC | 3 cut(s) | 657, 3463, 4515 |
| BsgI | GTGCAG | 3 cut(s) | 3141, 3167, 4389 |
| Bsh1236I | CGCG | 4 cut(s) | 50, 66, 68, 83 |
| Bsh1285I | CGRYCG | 2 cut(s) | 251, 2205 |
| BshFI | GGCC | 9 cut(s) | 250, 410, 428, 473, 1008, 4650, 4692, 4792, 4806 |
| BshNI | GGYRCC | 2 cut(s) | 123, 3820 |
| BsiEI | CGRYCG | 2 cut(s) | 251, 2205 |
| BsiHKAI | GWGCWC | 2 cut(s) | 48, 948 |
| BsiHKCI | CYCGRG | 3 cut(s) | 3084, 4564, 4800 |
| BsiSI | CCGG | 9 cut(s) | 32, 121, 254, 789, 1862, 3818, 4565, 4632, 4693 |
| BsiWI | CGTACG | 1 cut(s) | 547 |
| BslFI | GGGAC | 8 cut(s) | 416, 919, 1525, 3270, 3503, 3700, 4157, 4439 |
| BsmAI | GTCTC | 6 cut(s) | 262, 3239, 3303, 3975, 4518, 4662 |
| BsmFI | GGGAC | 8 cut(s) | 416, 919, 1525, 3270, 3503, 3700, 4157, 4439 |
| BsmI | GAATGC | 4 cut(s) | 1649, 2590, 3921, 3952 |
| BsnI | GGCC | 9 cut(s) | 250, 410, 428, 473, 1008, 4650, 4692, 4792, 4806 |
| Bso31I | GGTCTC | 2 cut(s) | 262, 4518 |
| BsoBI | CYCGRG | 3 cut(s) | 3084, 4564, 4800 |
| Bsp1286I | GDGCHC | 3 cut(s) | 48, 948, 3910 |
| Bsp1407I | TGTACA | 1 cut(s) | 497 |
| Bsp19I | CCATGG | 2 cut(s) | 743, 4166 |
| BspANI | GGCC | 9 cut(s) | 250, 410, 428, 473, 1008, 4650, 4692, 4792, 4806 |
| BspCNI | CTCAG | 6 cut(s) | 151, 1104, 1648, 1753, 1815, 2509 |
| BspFNI | CGCG | 4 cut(s) | 50, 66, 68, 83 |
| BspHI | TCATGA | 2 cut(s) | 1423, 4825 |
| BspLI | GGNNCC | 6 cut(s) | 125, 1513, 1923, 2325, 3822, 4383 |
| BspMAI | CTGCAG | 4 cut(s) | 2263, 2698, 2779, 4441 |
| BspMI | ACCTGC | 4 cut(s) | 2701, 2782, 3187, 4094 |
| BspPI | GGATC | 9 cut(s) | 880, 1076, 1904, 1916, 1929, 2007, 3096, 4105, 4249 |
| BspT107I | GGYRCC | 2 cut(s) | 123, 3820 |
| BspTNI | GGTCTC | 2 cut(s) | 262, 4518 |
| BsrBI | CCGCTC | 2 cut(s) | 55, 3554 |
| BsrDI | GCAATG | 2 cut(s) | 1725, 3310 |
| BsrFI | RCCGGY | 1 cut(s) | 31 |
| BsrGI | TGTACA | 1 cut(s) | 497 |
| BssAI | RCCGGY | 1 cut(s) | 31 |
| BssNI | GRCGYC | 1 cut(s) | 908 |
| BssT1I | CCWWGG | 7 cut(s) | 743, 2535, 4131, 4166, 4413, 4448, 4457 |
| Bst2UI | CCWGG | 6 cut(s) | 1010, 2153, 2321, 3831, 4251, 4386 |
| Bst4CI | ACNGT | 7 cut(s) | 1653, 1696, 1884, 2364, 2477, 2514, 3870 |
| Bst6I | CTCTTC | 4 cut(s) | 209, 674, 2610, 3798 |
| BstACI | GRCGYC | 1 cut(s) | 908 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1884 |
| BstAUI | TGTACA | 1 cut(s) | 497 |
| BstBAI | YACGTR | 2 cut(s) | 1030, 1292 |
| BstC8I | GCNNGC | 9 cut(s) | 33, 44, 48, 1755, 2651, 3919, 4513, 4752, 4808 |
| BstDSI | CCRYGG | 2 cut(s) | 743, 4166 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 1163, 3834, 4800 |
| BstFNI | CGCG | 4 cut(s) | 50, 66, 68, 83 |
| BstHHI | GCGC | 5 cut(s) | 68, 83, 1383, 1878, 2470 |
| BstMAI | GTCTC | 6 cut(s) | 262, 3239, 3303, 3975, 4518, 4662 |
| BstMCI | CGRYCG | 2 cut(s) | 251, 2205 |
| BstNI | CCWGG | 6 cut(s) | 1010, 2153, 2321, 3831, 4251, 4386 |
| BstNSI | RCATGY | 4 cut(s) | 579, 3861, 4150, 4432 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3495 |
| BstSFI | CTRYAG | 6 cut(s) | 2259, 2694, 2775, 2856, 4274, 4437 |
| BstSLI | GKGCMC | 1 cut(s) | 3910 |
| BstSNI | TACGTA | 1 cut(s) | 1030 |
| BstUI | CGCG | 4 cut(s) | 50, 66, 68, 83 |
| BstV2I | GAAGAC | 4 cut(s) | 1947, 2383, 3144, 3342 |
| BstX2I | RGATCY | 6 cut(s) | 872, 1614, 1921, 2012, 3685, 4110 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2741, 2822 |
| BstYI | RGATCY | 6 cut(s) | 872, 1614, 1921, 2012, 3685, 4110 |
| BstZI | CGGCCG | 1 cut(s) | 248 |
| Bsu36I | CCTNAGG | 1 cut(s) | 372 |
| BsuI | GTATCC | 2 cut(s) | 678, 994 |
| BsuRI | GGCC | 9 cut(s) | 250, 410, 428, 473, 1008, 4650, 4692, 4792, 4806 |
| BtgI | CCRYGG | 2 cut(s) | 743, 4166 |
| BtgZI | GCGATG | 1 cut(s) | 3896 |
| BtrI | CACGTC | 2 cut(s) | 193, 3911 |
| BtsI | GCAGTG | 2 cut(s) | 204, 2268 |
| BtsIMutI | CAGTG | 9 cut(s) | 204, 874, 1947, 2117, 2268, 2328, 2922, 3544, 3570 |
| BveI | ACCTGC | 4 cut(s) | 2701, 2782, 3187, 4094 |
| Cac8I | GCNNGC | 9 cut(s) | 33, 44, 48, 1755, 2651, 3919, 4513, 4752, 4808 |
| CaiI | CAGNNNCTG | 4 cut(s) | 1852, 2702, 2783, 4250 |
| CciI | TCATGA | 2 cut(s) | 1423, 4825 |
| CfoI | GCGC | 5 cut(s) | 68, 83, 1383, 1878, 2470 |
| Cfr10I | RCCGGY | 1 cut(s) | 31 |
| Cfr13I | GGNCC | 8 cut(s) | 4, 847, 1512, 1973, 2323, 2345, 4556, 4682 |
| Cfr9I | CCCGGG | 1 cut(s) | 4564 |
| CseI | GACGC | 1 cut(s) | 88 |
| EaeI | YGGCCR | 2 cut(s) | 248, 1006 |
| EagI | CGGCCG | 1 cut(s) | 248 |
| Eam1104I | CTCTTC | 4 cut(s) | 209, 674, 2610, 3798 |
| EarI | CTCTTC | 4 cut(s) | 209, 674, 2610, 3798 |
| EciI | GGCGGA | 2 cut(s) | 89, 101 |
| Ecl136II | GAGCTC | 1 cut(s) | 946 |
| EclXI | CGGCCG | 1 cut(s) | 248 |
| Eco105I | TACGTA | 1 cut(s) | 1030 |
| Eco130I | CCWWGG | 7 cut(s) | 743, 2535, 4131, 4166, 4413, 4448, 4457 |
| Eco147I | AGGCCT | 2 cut(s) | 410, 473 |
| Eco24I | GRGCYC | 1 cut(s) | 948 |
| Eco31I | GGTCTC | 2 cut(s) | 262, 4518 |
| Eco47I | GGWCC | 8 cut(s) | 4, 847, 1512, 1973, 2323, 2345, 4556, 4682 |
| Eco52I | CGGCCG | 1 cut(s) | 248 |
| Eco53kI | GAGCTC | 1 cut(s) | 946 |
| Eco57I | CTGAAG | 8 cut(s) | 939, 1548, 1959, 2691, 2772, 2853, 3717, 3822 |
| Eco81I | CCTNAGG | 1 cut(s) | 372 |
| Eco88I | CYCGRG | 3 cut(s) | 3084, 4564, 4800 |
| EcoICRI | GAGCTC | 1 cut(s) | 946 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 1163, 3834, 4800 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2323 |
| EcoRI | GAATTC | 2 cut(s) | 1628, 4282 |
| EcoRII | CCWGG | 6 cut(s) | 1008, 2151, 2319, 3829, 4249, 4384 |
| EcoT14I | CCWWGG | 7 cut(s) | 743, 2535, 4131, 4166, 4413, 4448, 4457 |
| EcoT22I | ATGCAT | 2 cut(s) | 1336, 2461 |
| EcoT38I | GRGCYC | 1 cut(s) | 948 |
| ErhI | CCWWGG | 7 cut(s) | 743, 2535, 4131, 4166, 4413, 4448, 4457 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 932, 964, 2026, 2058, 3175, 3207 |
| FaqI | GGGAC | 8 cut(s) | 416, 919, 1525, 3270, 3503, 3700, 4157, 4439 |
| FauI | CCCGC | 5 cut(s) | 220, 234, 393, 4803, 4826 |
| FauNDI | CATATG | 4 cut(s) | 183, 966, 1336, 2995 |
| FbaI | TGATCA | 5 cut(s) | 1471, 1609, 1621, 1680, 4036 |
| FblI | GTMKAC | 2 cut(s) | 24, 4433 |
| FriOI | GRGCYC | 1 cut(s) | 948 |
| FspBI | CTAG | 9 cut(s) | 851, 888, 1464, 3618, 3993, 4152, 4176, 4329, 4458 |
| GlaI | GCGC | 5 cut(s) | 67, 82, 1382, 1877, 2469 |
| GsaI | CCCAGC | 3 cut(s) | 661, 3467, 4519 |
| HaeIII | GGCC | 9 cut(s) | 250, 410, 428, 473, 1008, 4650, 4692, 4792, 4806 |
| HapII | CCGG | 9 cut(s) | 32, 121, 254, 789, 1862, 3818, 4565, 4632, 4693 |
| HgaI | GACGC | 1 cut(s) | 88 |
| HhaI | GCGC | 5 cut(s) | 68, 83, 1383, 1878, 2470 |
| Hin1I | GRCGYC | 1 cut(s) | 908 |
| Hin6I | GCGC | 5 cut(s) | 66, 81, 1381, 1876, 2468 |
| HinP1I | GCGC | 5 cut(s) | 66, 81, 1381, 1876, 2468 |
| HincII | GTYRAC | 3 cut(s) | 4063, 4090, 4372 |
| HindII | GTYRAC | 3 cut(s) | 4063, 4090, 4372 |
| HindIII | AAGCTT | 3 cut(s) | 1139, 1565, 2647 |
| HpaI | GTTAAC | 1 cut(s) | 4372 |
| HpaII | CCGG | 9 cut(s) | 32, 121, 254, 789, 1862, 3818, 4565, 4632, 4693 |
| Hpy99I | CGWCG | 2 cut(s) | 104, 134 |
| HpyCH4III | ACNGT | 7 cut(s) | 1653, 1696, 1884, 2364, 2477, 2514, 3870 |
| HpyCH4IV | ACGT | 8 cut(s) | 192, 908, 1029, 1291, 1810, 1870, 3546, 3910 |
| HpySE526I | ACGT | 8 cut(s) | 192, 908, 1029, 1291, 1810, 1870, 3546, 3910 |
| Hsp92I | GRCGYC | 1 cut(s) | 908 |
| HspAI | GCGC | 5 cut(s) | 66, 81, 1381, 1876, 2468 |
| KroI | GCCGGC | 1 cut(s) | 31 |
| KroNI | GCCGGC | 1 cut(s) | 33 |
| Ksp22I | TGATCA | 5 cut(s) | 1471, 1609, 1621, 1680, 4036 |
| KspAI | GTTAAC | 1 cut(s) | 4372 |
| MaeI | CTAG | 9 cut(s) | 851, 888, 1464, 3618, 3993, 4152, 4176, 4329, 4458 |
| MaeII | ACGT | 8 cut(s) | 192, 908, 1029, 1291, 1810, 1870, 3546, 3910 |
| MaeIII | GTNAC | 8 cut(s) | 896, 1049, 1121, 1653, 1778, 3430, 3886, 4862 |
| MbiI | CCGCTC | 2 cut(s) | 55, 3554 |
| MfeI | CAATTG | 4 cut(s) | 1443, 1605, 4040, 4376 |
| MflI | RGATCY | 6 cut(s) | 872, 1614, 1921, 2012, 3685, 4110 |
| MhlI | GDGCHC | 3 cut(s) | 48, 948, 3910 |
| MmeI | TCCRAC | 2 cut(s) | 4529, 4565 |
| Mph1103I | ATGCAT | 2 cut(s) | 1336, 2461 |
| MroNI | GCCGGC | 1 cut(s) | 31 |
| MroXI | GAANNNNTTC | 3 cut(s) | 3420, 4209, 4491 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1785, 2739, 2820, 4262, 4313 |
| MspA1I | CMGCKG | 7 cut(s) | 462, 657, 1760, 2201, 3577, 4034, 4810 |
| MspI | CCGG | 9 cut(s) | 32, 121, 254, 789, 1862, 3818, 4565, 4632, 4693 |
| MunI | CAATTG | 4 cut(s) | 1443, 1605, 4040, 4376 |
| Mva1269I | GAATGC | 4 cut(s) | 1649, 2590, 3921, 3952 |
| MvaI | CCWGG | 6 cut(s) | 1010, 2153, 2321, 3831, 4251, 4386 |
| MvnI | CGCG | 4 cut(s) | 50, 66, 68, 83 |
| NaeI | GCCGGC | 1 cut(s) | 33 |
| NciI | CCSGG | 5 cut(s) | 255, 3818, 4565, 4566, 4694 |
| NcoI | CCATGG | 2 cut(s) | 743, 4166 |
| NdeI | CATATG | 4 cut(s) | 183, 966, 1336, 2995 |
| NgoMIV | GCCGGC | 1 cut(s) | 31 |
| NlaIV | GGNNCC | 6 cut(s) | 125, 1513, 1923, 2325, 3822, 4383 |
| NmeAIII | GCCGAG | 1 cut(s) | 1249 |
| NmuCI | GTSAC | 5 cut(s) | 896, 1049, 1121, 1778, 3886 |
| NsiI | ATGCAT | 2 cut(s) | 1336, 2461 |
| NspI | RCATGY | 4 cut(s) | 579, 3861, 4150, 4432 |
| OliI | CACNNNNGTG | 3 cut(s) | 1785, 4262, 4313 |
| PaeR7I | CTCGAG | 1 cut(s) | 4800 |
| PagI | TCATGA | 2 cut(s) | 1423, 4825 |
| PaqCI | CACCTGC | 4 cut(s) | 2701, 2782, 3187, 4094 |
| PceI | AGGCCT | 2 cut(s) | 410, 473 |
| PciI | ACATGT | 3 cut(s) | 575, 4146, 4428 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 108 |
| PctI | GAATGC | 4 cut(s) | 1649, 2590, 3921, 3952 |
| PdiI | GCCGGC | 1 cut(s) | 33 |
| PdmI | GAANNNNTTC | 3 cut(s) | 3420, 4209, 4491 |
| Pfl23II | CGTACG | 1 cut(s) | 547 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3305 |
| Ppu21I | YACGTR | 2 cut(s) | 1030, 1292 |
| PpuMI | RGGWCCY | 1 cut(s) | 2323 |
| PscI | ACATGT | 3 cut(s) | 575, 4146, 4428 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3495 |
| PshBI | ATTAAT | 1 cut(s) | 1362 |
| PsiI | TTATAA | 1 cut(s) | 1163 |
| Psp124BI | GAGCTC | 1 cut(s) | 948 |
| Psp5II | RGGWCCY | 1 cut(s) | 2323 |
| Psp6I | CCWGG | 6 cut(s) | 1008, 2151, 2319, 3829, 4249, 4384 |
| PspFI | CCCAGC | 3 cut(s) | 657, 3463, 4515 |
| PspGI | CCWGG | 6 cut(s) | 1008, 2151, 2319, 3829, 4249, 4384 |
| PspLI | CGTACG | 1 cut(s) | 547 |
| PspN4I | GGNNCC | 6 cut(s) | 125, 1513, 1923, 2325, 3822, 4383 |
| PspPI | GGNCC | 8 cut(s) | 4, 847, 1512, 1973, 2323, 2345, 4556, 4682 |
| PspPPI | RGGWCCY | 1 cut(s) | 2323 |
| PspXI | VCTCGAGB | 1 cut(s) | 4800 |
| PstI | CTGCAG | 4 cut(s) | 2263, 2698, 2779, 4441 |
| PstNI | CAGNNNCTG | 4 cut(s) | 1852, 2702, 2783, 4250 |
| PsuI | RGATCY | 6 cut(s) | 872, 1614, 1921, 2012, 3685, 4110 |
| PvuII | CAGCTG | 5 cut(s) | 462, 657, 1760, 3577, 4034 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1785, 2739, 2820, 4262, 4313 |
| SacI | GAGCTC | 1 cut(s) | 948 |
| Sau96I | GGNCC | 8 cut(s) | 4, 847, 1512, 1973, 2323, 2345, 4556, 4682 |
| ScaI | AGTACT | 1 cut(s) | 2474 |
| SduI | GDGCHC | 3 cut(s) | 48, 948, 3910 |
| SfcI | CTRYAG | 6 cut(s) | 2259, 2694, 2775, 2856, 4274, 4437 |
| Sfr274I | CTCGAG | 1 cut(s) | 4800 |
| SinI | GGWCC | 8 cut(s) | 4, 847, 1512, 1973, 2323, 2345, 4556, 4682 |
| SlaI | CTCGAG | 1 cut(s) | 4800 |
| SmaI | CCCGGG | 1 cut(s) | 4566 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1785, 2739, 2820, 4262, 4313 |
| SmlI | CTYRAG | 3 cut(s) | 630, 1391, 4800 |
| SmoI | CTYRAG | 3 cut(s) | 630, 1391, 4800 |
| SnaBI | TACGTA | 1 cut(s) | 1030 |
| SseBI | AGGCCT | 2 cut(s) | 410, 473 |
| SspI | AATATT | 2 cut(s) | 1189, 1360 |
| SspMI | CTAG | 9 cut(s) | 851, 888, 1464, 3618, 3993, 4152, 4176, 4329, 4458 |
| SstI | GAGCTC | 1 cut(s) | 948 |
| StuI | AGGCCT | 2 cut(s) | 410, 473 |
| StyI | CCWWGG | 7 cut(s) | 743, 2535, 4131, 4166, 4413, 4448, 4457 |
| TaaI | ACNGT | 7 cut(s) | 1653, 1696, 1884, 2364, 2477, 2514, 3870 |
| TaiI | ACGT | 8 cut(s) | 195, 911, 1032, 1294, 1813, 1873, 3549, 3913 |
| TaqII | GACCGA | 1 cut(s) | 4542 |
| TatI | WGTACW | 7 cut(s) | 497, 678, 2472, 2768, 2849, 4154, 4535 |
| TauI | GCSGC | 9 cut(s) | 58, 71, 74, 86, 253, 629, 1381, 3554, 4795 |
| TscAI | CASTG | 9 cut(s) | 204, 874, 1954, 2124, 2268, 2335, 2922, 3544, 3570 |
| TseFI | GTSAC | 5 cut(s) | 896, 1049, 1121, 1778, 3886 |
| Tsp45I | GTSAC | 5 cut(s) | 896, 1049, 1121, 1778, 3886 |
| TspGWI | ACGGA | 7 cut(s) | 915, 976, 1165, 1965, 2005, 3993, 4677 |
| TspMI | CCCGGG | 1 cut(s) | 4564 |
| TspRI | CASTG | 9 cut(s) | 204, 874, 1954, 2124, 2268, 2335, 2922, 3544, 3570 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3305 |
| VpaK11BI | GGWCC | 8 cut(s) | 4, 847, 1512, 1973, 2323, 2345, 4556, 4682 |
| VspI | ATTAAT | 1 cut(s) | 1362 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 1163, 3834, 4800 |
| XceI | RCATGY | 4 cut(s) | 579, 3861, 4150, 4432 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1988, 2327 |
| XhoI | CTCGAG | 1 cut(s) | 4800 |
| XmaI | CCCGGG | 1 cut(s) | 4564 |
| XmaJI | CCTAGG | 1 cut(s) | 4457 |
| XmiI | GTMKAC | 2 cut(s) | 24, 4433 |
| XmnI | GAANNNNTTC | 3 cut(s) | 3420, 4209, 4491 |
| XspI | CTAG | 9 cut(s) | 851, 888, 1464, 3618, 3993, 4152, 4176, 4329, 4458 |
| ZraI | GACGTC | 1 cut(s) | 909 |
| ZrmI | AGTACT | 1 cut(s) | 2474 |
| Zsp2I | ATGCAT | 2 cut(s) | 1336, 2461 |