Rw2G014130

CLK4-associating serine arginine rich

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
15683215 .. 15686073
2859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G014130.1

Sequence Viewer

Length: 1239 bp
ATGGAGGCCAAGGTTACTGCTCCGTTTGCACCTGAGAGGTCTCAGCCGCAACAAGCTTCTGCCACCAAGGGTTCTTATTCCCAAGTTGGGTTCTCTTATGGTGGGGATGGAAAAGAGGACGCCCAGTATTCAGATGCTGATGAAGACGATGATGATGATGACGATGACGAAGATGAGGATGATTTCAACTCTGATGATAGCAGTGATGAAGGAATGGATAAAATAGCAAAAGAATTTGGAATCAAGAGGTATGGTTGGCTTGTCTGCATGGATAAGAAAGCCAAGGAGGAGGAGAAAAGGCAAAAGGAAGTGATCAAAGGCGATCCTGCAATTAGGAAGATGAGTCGCAAGGAAAGAAGGAAGGTTTCTCAGATAGAAAGGGAGAGGGAAAGAGAAACTGCCCGGGTAACTGGAACTCGTGTTCTCCAACATGATCCATACCGTGAAAGCAGGCGAAGTCCAACATATGAAGCTTATCCTCGTTCAAGAAGATCAAGATCTCGATCACCATCATACTCAAGGCGTCATCCTCGCGGACGACATTCTGATGCTCATAGAAGCAAACCAACGACTTCTAAAATTGAATACATTACAGAATTTGGGGGCTCAGGCGATAAGGAAGAATCAAAGCGTGAAGGGTTTTCTCCACCACAATCTCCTCGCTCACAGACTGATGTGCTAAACCGGTCTTCAACTGGTGTAATACTTGAGGCTCTGCATGTCGATCCTGCATCCGGTGCATTGCTTGACAAGGATAAGAGCACTAAAGTGGTGAAGCCATCAGCAAGCACATCTTCAGCATTAGCAAAGTTAAGTAAGACAAGTACTTCTGTGGGGTCACTGAAGCAGCAACCAGCAGAGAAGAAAGAAACTCCTCAAGAAAGACTTAAAAGGATTATGAGCAAGCAGCTGAACAAACAGATTAAGAAAGATACTGCCGCTGAAATGGCTAAAAAGCGAGAGCAGGAGCGCCAGAGGCTGGAAAAACTTGCTGAAACAAGCCGGTTAAGTCGATCTAGGCGCCATAGTCGTAGCAGGAGCTACAGCCGTTCTCCACCAAGAAGACACCGACGCAGTAGAAGTCCAAGTCGAAGCAGGAGTTCCCGACGACATTACTCCCGTTCTAGGTCAAGGTCCCGCTCCCGGTCTAGTTCTCACTCCAGGTCTGGCTCCCGTACCCGTACTCGCTCACGCACGTACTCCCGCTCACCAAGGGTAACAAGTCGTTCAAGATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

412

Amino Acids

47.27

Weight (kDa)

10.34

Isoelectric Point (pI)

99.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1020
AccB7I CCANNNNNTGG 1 cut(s) 979
AccBSI CCGCTC 2 cut(s) 1140, 1206
AccII CGCG 1 cut(s) 534
AciI CCGC 5 cut(s) 47, 534, 939, 1138, 1204
AclWI GGATC 3 cut(s) 317, 428, 719
AcsI RAATTY 2 cut(s) 233, 596
AcuI CTGAAG 2 cut(s) 780, 863
AcyI GRCGYC 3 cut(s) 120, 523, 1021
AfaI GTAC 4 cut(s) 826, 1177, 1183, 1199
AfiI CCNNNNNNNGG 5 cut(s) 87, 734, 979, 1125, 1143
AgeI ACCGGT 1 cut(s) 684
AgsI TTSAA 5 cut(s) 187, 486, 584, 693, 1230
AjnI CCWGG 1 cut(s) 1160
AleI CACNNNNGTG 1 cut(s) 767
AloI GAACNNNNNNTCC 2 cut(s) 405, 437
AluBI AGCT 4 cut(s) 56, 473, 910, 1041
AluI AGCT 4 cut(s) 56, 473, 910, 1041
Alw21I GWGCWC 1 cut(s) 764
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 3 cut(s) 317, 428, 719
AlwNI CAGNNNCTG 2 cut(s) 137, 979
Ama87I CYCGRG 1 cut(s) 402
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 2 cut(s) 847, 907
ApoI RAATTY 2 cut(s) 233, 596
AsiGI ACCGGT 1 cut(s) 684
AspLEI GCGC 2 cut(s) 972, 1023
AspS9I GGNCC 1 cut(s) 1134
AsuC2I CCSGG 3 cut(s) 403, 404, 1144
AsuHPI GGTGA 3 cut(s) 498, 784, 1200
AvaI CYCGRG 1 cut(s) 402
AvaII GGWCC 1 cut(s) 1134
BanI GGYRCC 1 cut(s) 1020
BanII GRGCYC 1 cut(s) 608
BauI CACGAG 1 cut(s) 417
BbsI GAAGAC 3 cut(s) 150, 681, 1069
Bbv12I GWGCWC 1 cut(s) 764
BbvI GCAGC 2 cut(s) 859, 919
BccI CCATC 3 cut(s) 101, 517, 787
BceAI ACGGC 1 cut(s) 1032
BciT130I CCWGG 1 cut(s) 1162
BclI TGATCA 1 cut(s) 312
BcnI CCSGG 3 cut(s) 403, 404, 1144
BcoDI GTCTC 1 cut(s) 45
BfaI CTAG 3 cut(s) 1017, 1125, 1149
BfmI CTRYAG 1 cut(s) 1042
BfoI RGCGCY 2 cut(s) 973, 1024
BglII AGATCT 1 cut(s) 497
BisI GCNGC 4 cut(s) 47, 848, 908, 939
BlsI GCNGC 4 cut(s) 48, 849, 909, 940
BmcAI AGTACT 1 cut(s) 826
Bme1390I CCNGG 4 cut(s) 403, 404, 1144, 1162
Bme18I GGWCC 1 cut(s) 1134
BmeT110I CYCGRG 1 cut(s) 402
BmgT120I GGNCC 1 cut(s) 1134
BmiI GGNNCC 3 cut(s) 1022, 1136, 1171
BmrFI CCNGG 4 cut(s) 403, 404, 1144, 1162
BmrI ACTGGG 1 cut(s) 118
BmsI GCATC 3 cut(s) 124, 538, 740
BmuI ACTGGG 1 cut(s) 118
BpiI GAAGAC 3 cut(s) 150, 681, 1069
BpmI CTGGAG 1 cut(s) 1144
Bpu10I CCTNAGC 1 cut(s) 607
BpuEI CTTGAG 3 cut(s) 502, 728, 861
BpuMI CCSGG 3 cut(s) 403, 404, 1144
BsaAI YACGTR 1 cut(s) 1197
BsaBI GATNNNNATC 3 cut(s) 496, 502, 508
BsaHI GRCGYC 3 cut(s) 120, 523, 1021
BsaI GGTCTC 1 cut(s) 45
BsaJI CCNNGG 5 cut(s) 9, 66, 282, 402, 1211
BsaWI WCCGGW 2 cut(s) 684, 734
Bsc4I CCNNNNNNNGG 5 cut(s) 87, 734, 979, 1125, 1143
Bse118I RCCGGY 2 cut(s) 684, 1002
Bse1I ACTGG 3 cut(s) 124, 415, 700
Bse3DI GCAATG 1 cut(s) 740
Bse8I GATNNNNATC 3 cut(s) 496, 502, 508
BseBI CCWGG 1 cut(s) 1162
BseDI CCNNGG 5 cut(s) 9, 66, 282, 402, 1211
BseGI GGATG 4 cut(s) 112, 184, 526, 731
BseJI GATNNNNATC 3 cut(s) 496, 502, 508
BseLI CCNNNNNNNGG 5 cut(s) 87, 734, 979, 1125, 1143
BseMI GCAATG 1 cut(s) 740
BseMII CTCAG 4 cut(s) 24, 56, 383, 621
BseNI ACTGG 3 cut(s) 124, 415, 700
BseRI GAGGAG 4 cut(s) 302, 305, 648, 864
BseXI GCAGC 2 cut(s) 859, 919
Bsh1236I CGCG 1 cut(s) 534
BshFI GGCC 1 cut(s) 8
BshNI GGYRCC 1 cut(s) 1020
BshTI ACCGGT 1 cut(s) 684
BsiHKAI GWGCWC 1 cut(s) 764
BsiHKCI CYCGRG 1 cut(s) 402
BsiSI CCGG 5 cut(s) 403, 685, 735, 1003, 1144
BslFI GGGAC 1 cut(s) 1120
BslI CCNNNNNNNGG 5 cut(s) 87, 734, 979, 1125, 1143
BsmAI GTCTC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 1120
BsnI GGCC 1 cut(s) 8
Bso31I GGTCTC 1 cut(s) 45
BsoBI CYCGRG 1 cut(s) 402
Bsp1286I GDGCHC 2 cut(s) 608, 764
Bsp143I GATC 8 cut(s) 312, 322, 433, 491, 497, 503, 724, 1013
BspACI CCGC 5 cut(s) 47, 534, 939, 1138, 1204
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 4 cut(s) 25, 55, 382, 620
BspFNI CGCG 1 cut(s) 534
BspLI GGNNCC 3 cut(s) 1022, 1136, 1171
BspPI GGATC 3 cut(s) 317, 428, 719
BspT107I GGYRCC 1 cut(s) 1020
BspTNI GGTCTC 1 cut(s) 45
BsrBI CCGCTC 2 cut(s) 1140, 1206
BsrDI GCAATG 1 cut(s) 740
BsrFI RCCGGY 2 cut(s) 684, 1002
BsrI ACTGG 3 cut(s) 124, 415, 700
BssAI RCCGGY 2 cut(s) 684, 1002
BssECI CCNNGG 5 cut(s) 9, 66, 282, 402, 1211
BssMI GATC 8 cut(s) 312, 322, 433, 491, 497, 503, 724, 1013
BssNI GRCGYC 3 cut(s) 120, 523, 1021
BssSI CACGAG 1 cut(s) 417
BssT1I CCWWGG 4 cut(s) 9, 66, 282, 1211
Bst2BI CACGAG 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 1162
Bst4CI ACNGT 1 cut(s) 443
BstACI GRCGYC 3 cut(s) 120, 523, 1021
BstAPI GCANNNNNTGC 1 cut(s) 737
BstBAI YACGTR 1 cut(s) 1197
BstC8I GCNNGC 3 cut(s) 452, 787, 905
BstDEI CTNAG 4 cut(s) 33, 42, 369, 607
BstF5I GGATG 4 cut(s) 112, 184, 526, 731
BstFNI CGCG 1 cut(s) 534
BstH2I RGCGCY 2 cut(s) 973, 1024
BstHHI GCGC 2 cut(s) 972, 1023
BstKTI GATC 8 cut(s) 315, 325, 436, 494, 500, 506, 727, 1016
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 8 cut(s) 312, 322, 433, 491, 497, 503, 724, 1013
BstMWI GCNNNNNNNGC 4 cut(s) 26, 737, 947, 976
BstNI CCWGG 1 cut(s) 1162
BstNSI RCATGY 1 cut(s) 722
BstSCI CCNGG 4 cut(s) 401, 402, 1142, 1160
BstSFI CTRYAG 1 cut(s) 1042
BstUI CGCG 1 cut(s) 534
BstV1I GCAGC 2 cut(s) 859, 919
BstV2I GAAGAC 3 cut(s) 150, 681, 1069
BstX2I RGATCY 1 cut(s) 497
BstYI RGATCY 1 cut(s) 497
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 4 cut(s) 112, 184, 526, 731
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 2 cut(s) 208, 839
Cac8I GCNNGC 3 cut(s) 452, 787, 905
CaiI CAGNNNCTG 2 cut(s) 137, 979
CfoI GCGC 2 cut(s) 972, 1023
Cfr10I RCCGGY 2 cut(s) 684, 1002
Cfr13I GGNCC 1 cut(s) 1134
Cfr9I CCCGGG 1 cut(s) 402
CseI GACGC 3 cut(s) 128, 512, 1080
Csp6I GTAC 4 cut(s) 825, 1176, 1182, 1198
CspAI ACCGGT 1 cut(s) 684
CviAII CATG 3 cut(s) 268, 431, 719
CviQI GTAC 4 cut(s) 825, 1176, 1182, 1198
DdeI CTNAG 4 cut(s) 33, 42, 369, 607
DinI GGCGCC 1 cut(s) 1022
DpnI GATC 8 cut(s) 314, 324, 435, 493, 499, 505, 726, 1015
DpnII GATC 8 cut(s) 312, 322, 433, 491, 497, 503, 724, 1013
Eco130I CCWWGG 4 cut(s) 9, 66, 282, 1211
Eco24I GRGCYC 1 cut(s) 608
Eco31I GGTCTC 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 1134
Eco57I CTGAAG 2 cut(s) 780, 863
Eco88I CYCGRG 1 cut(s) 402
EcoO109I RGGNCCY 1 cut(s) 1134
EcoRII CCWGG 1 cut(s) 1160
EcoT14I CCWWGG 4 cut(s) 9, 66, 282, 1211
EcoT38I GRGCYC 1 cut(s) 608
EgeI GGCGCC 1 cut(s) 1022
EheI GGCGCC 1 cut(s) 1022
ErhI CCWWGG 4 cut(s) 9, 66, 282, 1211
FaeI CATG 3 cut(s) 271, 434, 722
FalI AAGNNNNNCTT 4 cut(s) 778, 810, 870, 902
FaqI GGGAC 1 cut(s) 1120
FatI CATG 3 cut(s) 267, 430, 718
FauI CCCGC 2 cut(s) 1145, 1211
FauNDI CATATG 1 cut(s) 466
FbaI TGATCA 1 cut(s) 312
Fnu4HI GCNGC 4 cut(s) 47, 848, 908, 939
FokI GGATG 4 cut(s) 119, 191, 513, 718
FriOI GRGCYC 1 cut(s) 608
Fsp4HI GCNGC 4 cut(s) 47, 848, 908, 939
FspBI CTAG 3 cut(s) 1017, 1125, 1149
GlaI GCGC 2 cut(s) 971, 1022
GluI GCNGC 4 cut(s) 47, 848, 908, 939
GsuI CTGGAG 1 cut(s) 1144
HaeII RGCGCY 2 cut(s) 973, 1024
HaeIII GGCC 1 cut(s) 8
HapII CCGG 5 cut(s) 403, 685, 735, 1003, 1144
HgaI GACGC 3 cut(s) 128, 512, 1080
HhaI GCGC 2 cut(s) 972, 1023
Hin1I GRCGYC 3 cut(s) 120, 523, 1021
Hin1II CATG 3 cut(s) 271, 434, 722
Hin6I GCGC 2 cut(s) 970, 1021
HinP1I GCGC 2 cut(s) 970, 1021
HindIII AAGCTT 2 cut(s) 54, 471
HinfI GANTC 3 cut(s) 240, 343, 623
HpaII CCGG 5 cut(s) 403, 685, 735, 1003, 1144
HphI GGTGA 3 cut(s) 498, 784, 1200
Hpy188I TCNGA 4 cut(s) 133, 193, 372, 547
Hpy188III TCNNGA 7 cut(s) 244, 486, 495, 501, 878, 1104, 1230
Hpy99I CGWCG 2 cut(s) 1074, 1110
HpyAV CCTTC 4 cut(s) 203, 351, 355, 629
HpyCH4III ACNGT 1 cut(s) 443
HpyCH4IV ACGT 1 cut(s) 1196
HpyCH4V TGCA 6 cut(s) 29, 267, 329, 718, 731, 740
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 737, 947, 976
HpyF3I CTNAG 4 cut(s) 33, 42, 369, 607
HpySE526I ACGT 1 cut(s) 1196
Hsp92I GRCGYC 3 cut(s) 120, 523, 1021
Hsp92II CATG 3 cut(s) 271, 434, 722
HspAI GCGC 2 cut(s) 970, 1021
KasI GGCGCC 1 cut(s) 1020
Ksp22I TGATCA 1 cut(s) 312
Kzo9I GATC 8 cut(s) 312, 322, 433, 491, 497, 503, 724, 1013
LmnI GCTCC 5 cut(s) 25, 967, 1038, 1145, 1175
Lsp1109I GCAGC 2 cut(s) 859, 919
LweI GCATC 3 cut(s) 124, 538, 740
MaeI CTAG 3 cut(s) 1017, 1125, 1149
MaeII ACGT 1 cut(s) 1196
MaeIII GTNAC 4 cut(s) 13, 406, 837, 1216
MalI GATC 8 cut(s) 314, 324, 435, 493, 499, 505, 726, 1015
MbiI CCGCTC 2 cut(s) 1140, 1206
MboI GATC 8 cut(s) 312, 322, 433, 491, 497, 503, 724, 1013
MboII GAAGA 9 cut(s) 155, 182, 349, 501, 632, 681, 786, 874, 1074
MflI RGATCY 1 cut(s) 497
MhlI GDGCHC 2 cut(s) 608, 764
MluCI AATT 4 cut(s) 233, 330, 579, 596
Mly113I GGCGCC 1 cut(s) 1021
MlyI GAGTC 1 cut(s) 352
MmeI TCCRAC 2 cut(s) 451, 485
MseI TTAA 4 cut(s) 812, 888, 924, 1007
MslI CAYNNNNRTG 2 cut(s) 546, 767
MspA1I CMGCKG 2 cut(s) 910, 941
MspI CCGG 5 cut(s) 403, 685, 735, 1003, 1144
MspR9I CCNGG 4 cut(s) 403, 404, 1144, 1162
MvaI CCWGG 1 cut(s) 1162
MvnI CGCG 1 cut(s) 534
MwoI GCNNNNNNNGC 4 cut(s) 26, 737, 947, 976
NarI GGCGCC 1 cut(s) 1021
NciI CCSGG 3 cut(s) 403, 404, 1144
NdeI CATATG 1 cut(s) 466
NdeII GATC 8 cut(s) 312, 322, 433, 491, 497, 503, 724, 1013
NlaIII CATG 3 cut(s) 271, 434, 722
NlaIV GGNNCC 3 cut(s) 1022, 1136, 1171
NmuCI GTSAC 1 cut(s) 837
NspI RCATGY 1 cut(s) 722
OliI CACNNNNGTG 1 cut(s) 767
PfeI GAWTC 2 cut(s) 240, 623
PflMI CCANNNNNTGG 1 cut(s) 979
PinAI ACCGGT 1 cut(s) 684
PkrI GCNGC 4 cut(s) 48, 849, 909, 940
PleI GAGTC 1 cut(s) 351
PluTI GGCGCC 1 cut(s) 1024
PpsI GAGTC 1 cut(s) 351
Ppu21I YACGTR 1 cut(s) 1197
PpuMI RGGWCCY 1 cut(s) 1134
Psp5II RGGWCCY 1 cut(s) 1134
Psp6I CCWGG 1 cut(s) 1160
PspGI CCWGG 1 cut(s) 1160
PspN4I GGNNCC 3 cut(s) 1022, 1136, 1171
PspPI GGNCC 1 cut(s) 1134
PspPPI RGGWCCY 1 cut(s) 1134
PstNI CAGNNNCTG 2 cut(s) 137, 979
PsuI RGATCY 1 cut(s) 497
PvuII CAGCTG 1 cut(s) 910
RsaI GTAC 4 cut(s) 826, 1177, 1183, 1199
RsaNI GTAC 4 cut(s) 825, 1176, 1182, 1198
RseI CAYNNNNRTG 2 cut(s) 546, 767
SaqAI TTAA 4 cut(s) 812, 888, 924, 1007
SatI GCNGC 4 cut(s) 47, 848, 908, 939
Sau3AI GATC 8 cut(s) 312, 322, 433, 491, 497, 503, 724, 1013
Sau96I GGNCC 1 cut(s) 1134
ScaI AGTACT 1 cut(s) 826
SchI GAGTC 1 cut(s) 352
ScrFI CCNGG 4 cut(s) 403, 404, 1144, 1162
SduI GDGCHC 2 cut(s) 608, 764
SfaNI GCATC 3 cut(s) 124, 538, 740
SfcI CTRYAG 1 cut(s) 1042
SfoI GGCGCC 1 cut(s) 1022
SinI GGWCC 1 cut(s) 1134
SmaI CCCGGG 1 cut(s) 404
SmiMI CAYNNNNRTG 2 cut(s) 546, 767
SmlI CTYRAG 3 cut(s) 517, 707, 876
SmoI CTYRAG 3 cut(s) 517, 707, 876
Sse9I AATT 4 cut(s) 233, 330, 579, 596
SsiI CCGC 5 cut(s) 47, 534, 939, 1138, 1204
SspDI GGCGCC 1 cut(s) 1020
SspMI CTAG 3 cut(s) 1017, 1125, 1149
StyD4I CCNGG 4 cut(s) 401, 402, 1142, 1160
StyI CCWWGG 4 cut(s) 9, 66, 282, 1211
TaaI ACNGT 1 cut(s) 443
TaiI ACGT 1 cut(s) 1199
TaqI TCGA 4 cut(s) 502, 723, 1012, 1090
TasI AATT 4 cut(s) 233, 330, 579, 596
TatI WGTACW 1 cut(s) 824
TauI GCSGC 2 cut(s) 49, 941
TfiI GAWTC 2 cut(s) 240, 623
Tru1I TTAA 4 cut(s) 812, 888, 924, 1007
Tru9I TTAA 4 cut(s) 812, 888, 924, 1007
TscAI CASTG 2 cut(s) 208, 846
TseFI GTSAC 1 cut(s) 837
TseI GCWGC 2 cut(s) 847, 907
Tsp45I GTSAC 1 cut(s) 837
TspDTI ATGAA 3 cut(s) 156, 222, 483
TspGWI ACGGA 1 cut(s) 12
TspMI CCCGGG 1 cut(s) 402
TspRI CASTG 2 cut(s) 208, 846
Van91I CCANNNNNTGG 1 cut(s) 979
VpaK11BI GGWCC 1 cut(s) 1134
XapI RAATTY 2 cut(s) 233, 596
XceI RCATGY 1 cut(s) 722
XmaI CCCGGG 1 cut(s) 402
XspI CTAG 3 cut(s) 1017, 1125, 1149
ZrmI AGTACT 1 cut(s) 826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.