Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004786

Physical Location & Seq

Genomic Coordinates Forward (+)

25743313 .. 25746950

Gene Structure 3638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1284300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGTGGGGTTTTAATTTAAGATTGTCACAGTTTAAGCTTCTTACGTTAACAGATAGTGATGATGAGGGTTTGCTACATGTGGAACAAGAGATAGAGGCCAAGTTTACTGCCCCGTTTGCTCCTGACAGGTCTCAGGCGCAACAACCTTCTGCTGTTAAGGGTTCTTATTCGCAGGTGGGGTTCTCTTATGAAGGGAATGGAAAAGATGAGGCCCAGTTTTCGGACTCTGATGATAATGATGAAGATGATGACGAAGATGAGGATGAGGATGATTTCAACAGTGATGACAGCAGTGATGAAGGAATGGATAAAATAGCAAAAGAGTTTGGAATAAAAAGATATGGTTGGCTTGTTTACATGGATAAGAAAGCTAAGGAGGAGGAGAAACGGCAAAAAGAAGTGATCAAAGGCGATCCTGCAATTAGGAAACTAAGTCGTAAGGAAAGAAGGAAGGCTTCTCAGATAGAAAGGGAGAGAGAAAGAGAAACTGCACGGGTAACTGGAACTCGGGTGCTCCACCATGACCCGTACCGTGAAACTAGACGAAGTCCAACATATGAAGCTTATCCTCGCCCAAGAAGATCAAGATCTCGATCATATTCACCATCATACTCACGGAGATATCCTCGTGGACGACATTCTGATGATGGTCATCGAAGCAAACCAACAATTGCTAAAATCGAATATATTACTGAATTTGGGGGATCCGGGGACAAGGATGGATCAAAGCGTGAAGGGTTCTCTCCACCATCGTCTCCTTCCTCACAGGCCAATGTGTTAAACCGGCCCTCAACTGGTCTCATACTTGAGGCTCTGCATATTGATCCTGCATCCGGTGCATCCCTTGAGAAGGATAAGGGTGCTAAATTGGTGAAACCACCAGCAAGATCATCAGCATTAGCTAAGTTAACTAAGGGAAGTACTTCTGTTGGGCCGTTGAAGCAGCAACCAGTGGAGAAGAAAGAAACTCCTCAAGAACGACTTAAAAGGATTATGAGCAAGCAACTGAACAAACAAATTAAGAAAGATACTGCTGCTGAAATAGCTAAAAAGCGAGAGCAGGAACGCCAGAGGCTGGAAAAACTTGCAGAAACAAGCCGATTAAGTCGATCTAGGCATCGTAGCCGCAGTAGGAGCTATAGCCGCTCTCCTCCAAGGTCGAAGACACCAACGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRY_EERY

Protein Analysis

393

Amino Acids

44.72

Weight (kDa)

9.54

Isoelectric Point (pI)

70.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36980 AT4G36980 AT4G36980 AT4G36980
fragaria_vesca	FvH4_1g16060 FvH4_1g16060 FvH4_1g16060 FvH4_1g16060 FvH4_1g16060
malus_domestica	MD02G1172000.v1.1 MD02G1172100.v1.1 MD15G1284200.v1.1 MD15G1284300.v1.1
prunus_persica	Prupe.7G133300_v2.0.a1 Prupe.7G133300_v2.0.a1 Prupe.7G133300_v2.0.a1 Prupe.7G133300_v2.0.a1 Prupe.7G133300_v2.0.a1
pyrus_communis	pycom02g13870 pycom15g24690
rosa_chinensis	RchiOBHm_Chr2g0105671
rosa_laevigata	RLG00000017448
rosa_multiflora	Rmu_co7977022.1_g000001 Rmu_sc0001051.1_g000055
rosa_roxburghii	Rroxscaffold_2G00137990
rosa_rugosa	Rorug02G0129200
rosa_samantha	Rh2AG180800 Rh2BG189900 Rh2CG185000 Rh2DG186800
rosa_wichuraiana	Rw2G014130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	163
Acc36I	ACCTGC	1 cut(s)	163
AccB7I	CCANNNNNTGG	1 cut(s)	1075
AccBSI	CCGCTC	1 cut(s)	1146
AciI	CCGC	2 cut(s)	1126, 1144
AclWI	GGATC	5 cut(s)	407, 699, 712, 730, 818
AcsI	RAATTY	1 cut(s)	695
AfaI	GTAC	2 cut(s)	530, 922
AfiI	CCNNNNNNNGG	5 cut(s)	220, 794, 833, 850, 1075
AflIII	ACRYGT	1 cut(s)	76
AgsI	TTSAA	2 cut(s)	277, 940
AleI	CACNNNNGTG	1 cut(s)	1171
AluBI	AGCT	6 cut(s)	37, 371, 563, 902, 1046, 1137
AluI	AGCT	6 cut(s)	37, 371, 563, 902, 1046, 1137
Alw21I	GWGCWC	1 cut(s)	516
Alw26I	GTCTC	3 cut(s)	135, 759, 803
AlwI	GGATC	5 cut(s)	407, 699, 712, 730, 818
AlwNI	CAGNNNCTG	1 cut(s)	1075
Ama87I	CYCGRG	1 cut(s)	507
AoxI	GGCC	5 cut(s)	96, 210, 768, 785, 932
ApeKI	GCWGC	2 cut(s)	943, 1034
ApoI	RAATTY	1 cut(s)	695
Asp700I	GAANNNNTTC	1 cut(s)	922
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	3 cut(s)	211, 786, 932
AsuC2I	CCSGG	1 cut(s)	709
AsuHPI	GGTGA	2 cut(s)	594, 883
AvaI	CYCGRG	1 cut(s)	507
BamHI	GGATCC	1 cut(s)	704
BauI	CACGAG	1 cut(s)	627
BbsI	GAAGAC	1 cut(s)	1169
Bbv12I	GWGCWC	1 cut(s)	516
BbvI	GCAGC	2 cut(s)	955, 1021
BccI	CCATC	4 cut(s)	613, 641, 713, 757
BceAI	ACGGC	2 cut(s)	404, 919
BclI	TGATCA	1 cut(s)	402
BcnI	CCSGG	1 cut(s)	709
BcoDI	GTCTC	3 cut(s)	135, 759, 803
BfaI	CTAG	2 cut(s)	540, 1113
BfmI	CTRYAG	1 cut(s)	1138
BfuAI	ACCTGC	1 cut(s)	163
BglII	AGATCT	1 cut(s)	587
BisI	GCNGC	4 cut(s)	944, 1035, 1126, 1144
BlsI	GCNGC	4 cut(s)	945, 1036, 1127, 1145
BmcAI	AGTACT	1 cut(s)	922
Bme1390I	CCNGG	1 cut(s)	709
BmeT110I	CYCGRG	1 cut(s)	507
BmgT120I	GGNCC	3 cut(s)	211, 786, 932
BmiI	GGNNCC	1 cut(s)	706
BmrFI	CCNGG	1 cut(s)	709
BmrI	ACTGGG	1 cut(s)	208
BmsI	GCATC	3 cut(s)	839, 848, 1126
BmuI	ACTGGG	1 cut(s)	208
BpiI	GAAGAC	1 cut(s)	1169
BplI	GAGNNNNNCTC	2 cut(s)	610, 642
Bpu10I	CCTNAGC	1 cut(s)	372
BpuEI	CTTGAG	3 cut(s)	827, 866, 957
BpuMI	CCSGG	1 cut(s)	709
BsaBI	GATNNNNATC	3 cut(s)	586, 592, 651
BsaI	GGTCTC	2 cut(s)	135, 803
BsaJI	CCNNGG	2 cut(s)	708, 1154
BsaWI	WCCGGW	1 cut(s)	833
Bsc4I	CCNNNNNNNGG	5 cut(s)	220, 794, 833, 850, 1075
Bse118I	RCCGGY	1 cut(s)	783
Bse1I	ACTGG	4 cut(s)	214, 505, 799, 950
Bse8I	GATNNNNATC	3 cut(s)	586, 592, 651
BseDI	CCNNGG	2 cut(s)	708, 1154
BseGI	GGATG	5 cut(s)	268, 274, 724, 830, 839
BseJI	GATNNNNATC	3 cut(s)	586, 592, 651
BseLI	CCNNNNNNNGG	5 cut(s)	220, 794, 833, 850, 1075
BseMII	CTCAG	2 cut(s)	146, 473
BseNI	ACTGG	4 cut(s)	214, 505, 799, 950
BseRI	GAGGAG	4 cut(s)	392, 395, 960, 1140
BseXI	GCAGC	2 cut(s)	955, 1021
BsgI	GTGCAG	1 cut(s)	474
BshFI	GGCC	5 cut(s)	98, 212, 770, 787, 934
BsiHKAI	GWGCWC	1 cut(s)	516
BsiHKCI	CYCGRG	1 cut(s)	507
BsiSI	CCGG	3 cut(s)	708, 784, 834
BslFI	GGGAC	1 cut(s)	725
BslI	CCNNNNNNNGG	5 cut(s)	220, 794, 833, 850, 1075
BsmAI	GTCTC	3 cut(s)	135, 759, 803
BsmBI	CGTCTC	1 cut(s)	759
BsmFI	GGGAC	1 cut(s)	725
BsnI	GGCC	5 cut(s)	98, 212, 770, 787, 934
Bso31I	GGTCTC	2 cut(s)	135, 803
BsoBI	CYCGRG	1 cut(s)	507
Bsp1286I	GDGCHC	1 cut(s)	516
BspACI	CCGC	2 cut(s)	1126, 1144
BspANI	GGCC	5 cut(s)	98, 212, 770, 787, 934
BspCNI	CTCAG	2 cut(s)	145, 472
BspLI	GGNNCC	1 cut(s)	706
BspMI	ACCTGC	1 cut(s)	163
BspPI	GGATC	5 cut(s)	407, 699, 712, 730, 818
BspTNI	GGTCTC	2 cut(s)	135, 803
BsrBI	CCGCTC	1 cut(s)	1146
BsrFI	RCCGGY	1 cut(s)	783
BsrI	ACTGG	4 cut(s)	214, 505, 799, 950
BssAI	RCCGGY	1 cut(s)	783
BssECI	CCNNGG	2 cut(s)	708, 1154
BssSI	CACGAG	1 cut(s)	627
BssT1I	CCWWGG	1 cut(s)	1154
Bst2BI	CACGAG	1 cut(s)	627
Bst4CI	ACNGT	3 cut(s)	30, 281, 533
BstAPI	GCANNNNNTGC	1 cut(s)	836
BstC8I	GCNNGC	1 cut(s)	1001
BstDEI	CTNAG	6 cut(s)	132, 372, 431, 459, 903, 912
BstENI	CCTNNNNNAGG	1 cut(s)	848
BstF5I	GGATG	5 cut(s)	268, 274, 724, 830, 839
BstHHI	GCGC	1 cut(s)	139
BstMAI	GTCTC	3 cut(s)	135, 759, 803
BstMWI	GCNNNNNNNGC	6 cut(s)	116, 836, 940, 1043, 1134, 1143
BstNSI	RCATGY	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	707
BstSFI	CTRYAG	1 cut(s)	1138
BstV1I	GCAGC	2 cut(s)	955, 1021
BstV2I	GAAGAC	1 cut(s)	1169
BstX2I	RGATCY	2 cut(s)	587, 704
BstYI	RGATCY	2 cut(s)	587, 704
BsuRI	GGCC	5 cut(s)	98, 212, 770, 787, 934
BtsCI	GGATG	5 cut(s)	268, 274, 724, 830, 839
BtsI	GCAGTG	1 cut(s)	298
BtsIMutI	CAGTG	3 cut(s)	286, 298, 957
BveI	ACCTGC	1 cut(s)	163
Cac8I	GCNNGC	1 cut(s)	1001
CaiI	CAGNNNCTG	1 cut(s)	1075
CfoI	GCGC	1 cut(s)	139
Cfr10I	RCCGGY	1 cut(s)	783
Cfr13I	GGNCC	3 cut(s)	211, 786, 932
Csp6I	GTAC	2 cut(s)	529, 921
CviAII	CATG	3 cut(s)	77, 358, 521
CviQI	GTAC	2 cut(s)	529, 921
DdeI	CTNAG	6 cut(s)	132, 372, 431, 459, 903, 912
Eco130I	CCWWGG	1 cut(s)	1154
Eco31I	GGTCTC	2 cut(s)	135, 803
Eco32I	GATATC	1 cut(s)	623
Eco88I	CYCGRG	1 cut(s)	507
EcoNI	CCTNNNNNAGG	1 cut(s)	848
EcoRV	GATATC	1 cut(s)	623
EcoT14I	CCWWGG	1 cut(s)	1154
ErhI	CCWWGG	1 cut(s)	1154
Esp3I	CGTCTC	1 cut(s)	759
FaeI	CATG	3 cut(s)	80, 361, 524
FalI	AAGNNNNNCTT	4 cut(s)	439, 471, 966, 998
FaqI	GGGAC	1 cut(s)	725
FatI	CATG	3 cut(s)	76, 357, 520
FauNDI	CATATG	1 cut(s)	556
FbaI	TGATCA	1 cut(s)	402
Fnu4HI	GCNGC	4 cut(s)	944, 1035, 1126, 1144
FokI	GGATG	5 cut(s)	275, 281, 731, 817, 826
Fsp4HI	GCNGC	4 cut(s)	944, 1035, 1126, 1144
FspBI	CTAG	2 cut(s)	540, 1113
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	4 cut(s)	944, 1035, 1126, 1144
HaeIII	GGCC	5 cut(s)	98, 212, 770, 787, 934
HapII	CCGG	3 cut(s)	708, 784, 834
HhaI	GCGC	1 cut(s)	139
Hin1II	CATG	3 cut(s)	80, 361, 524
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HincII	GTYRAC	2 cut(s)	48, 909
HindII	GTYRAC	2 cut(s)	48, 909
HindIII	AAGCTT	2 cut(s)	35, 561
HinfI	GANTC	1 cut(s)	224
HpaI	GTTAAC	2 cut(s)	48, 909
HpaII	CCGG	3 cut(s)	708, 784, 834
HphI	GGTGA	2 cut(s)	594, 883
Hpy166II	GTNNAC	5 cut(s)	48, 105, 355, 632, 909
Hpy188I	TCNGA	4 cut(s)	223, 229, 462, 643
Hpy188III	TCNNGA	4 cut(s)	122, 585, 591, 974
Hpy8I	GTNNAC	5 cut(s)	48, 105, 355, 632, 909
HpyAV	CCTTC	8 cut(s)	156, 185, 293, 441, 445, 728, 768, 844
HpyCH4III	ACNGT	3 cut(s)	30, 281, 533
HpyCH4IV	ACGT	2 cut(s)	44, 1172
HpyCH4V	TGCA	6 cut(s)	419, 491, 817, 830, 839, 1088
HpyF10VI	GCNNNNNNNGC	6 cut(s)	116, 836, 940, 1043, 1134, 1143
HpyF3I	CTNAG	6 cut(s)	132, 372, 431, 459, 903, 912
HpySE526I	ACGT	2 cut(s)	44, 1172
Hsp92II	CATG	3 cut(s)	80, 361, 524
HspAI	GCGC	1 cut(s)	137
Ksp22I	TGATCA	1 cut(s)	402
KspAI	GTTAAC	2 cut(s)	48, 909
LmnI	GCTCC	3 cut(s)	124, 519, 1134
Lsp1109I	GCAGC	2 cut(s)	955, 1021
LweI	GCATC	3 cut(s)	839, 848, 1126
MaeI	CTAG	2 cut(s)	540, 1113
MaeII	ACGT	2 cut(s)	44, 1172
MaeIII	GTNAC	2 cut(s)	24, 496
MbiI	CCGCTC	1 cut(s)	1146
MboII	GAAGA	5 cut(s)	254, 266, 591, 970, 1174
MfeI	CAATTG	1 cut(s)	669
MflI	RGATCY	2 cut(s)	587, 704
MhlI	GDGCHC	1 cut(s)	516
MluCI	AATT	6 cut(s)	13, 420, 669, 695, 866, 1017
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	1 cut(s)	575
MroXI	GAANNNNTTC	1 cut(s)	922
MslI	CAYNNNNRTG	2 cut(s)	642, 1171
MspI	CCGG	3 cut(s)	708, 784, 834
MspR9I	CCNGG	1 cut(s)	709
MunI	CAATTG	1 cut(s)	669
MwoI	GCNNNNNNNGC	6 cut(s)	116, 836, 940, 1043, 1134, 1143
NciI	CCSGG	1 cut(s)	709
NdeI	CATATG	1 cut(s)	556
NlaIII	CATG	3 cut(s)	80, 361, 524
NlaIV	GGNNCC	1 cut(s)	706
NmuCI	GTSAC	1 cut(s)	24
NspI	RCATGY	1 cut(s)	80
OliI	CACNNNNGTG	1 cut(s)	1171
PaqCI	CACCTGC	1 cut(s)	163
PciI	ACATGT	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	922
PflFI	GACNNNGTC	1 cut(s)	546
PflMI	CCANNNNNTGG	1 cut(s)	1075
PkrI	GCNGC	4 cut(s)	945, 1036, 1127, 1145
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
PscI	ACATGT	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	706
PspPI	GGNCC	3 cut(s)	211, 786, 932
PstNI	CAGNNNCTG	1 cut(s)	1075
PsuI	RGATCY	2 cut(s)	587, 704
PsyI	GACNNNGTC	1 cut(s)	546
RsaI	GTAC	2 cut(s)	530, 922
RsaNI	GTAC	2 cut(s)	529, 921
RseI	CAYNNNNRTG	2 cut(s)	642, 1171
SatI	GCNGC	4 cut(s)	944, 1035, 1126, 1144
Sau96I	GGNCC	3 cut(s)	211, 786, 932
ScaI	AGTACT	1 cut(s)	922
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	709
SduI	GDGCHC	1 cut(s)	516
SfaNI	GCATC	3 cut(s)	839, 848, 1126
SfcI	CTRYAG	1 cut(s)	1138
SmiMI	CAYNNNNRTG	2 cut(s)	642, 1171
SmlI	CTYRAG	3 cut(s)	806, 845, 972
SmoI	CTYRAG	3 cut(s)	806, 845, 972
Sse9I	AATT	6 cut(s)	13, 420, 669, 695, 866, 1017
SsiI	CCGC	2 cut(s)	1126, 1144
SspMI	CTAG	2 cut(s)	540, 1113
StyD4I	CCNGG	1 cut(s)	707
StyI	CCWWGG	1 cut(s)	1154
TaaI	ACNGT	3 cut(s)	30, 281, 533
TaiI	ACGT	2 cut(s)	47, 1175
TaqI	TCGA	5 cut(s)	592, 655, 681, 1108, 1160
TasI	AATT	6 cut(s)	13, 420, 669, 695, 866, 1017
TatI	WGTACW	1 cut(s)	920
TauI	GCSGC	2 cut(s)	1128, 1146
TscAI	CASTG	3 cut(s)	286, 298, 957
TseFI	GTSAC	1 cut(s)	24
TseI	GCWGC	2 cut(s)	943, 1034
Tsp45I	GTSAC	1 cut(s)	24
TspDTI	ATGAA	4 cut(s)	204, 255, 312, 573
TspGWI	ACGGA	1 cut(s)	631
TspRI	CASTG	3 cut(s)	286, 298, 957
Tth111I	GACNNNGTC	1 cut(s)	546
Van91I	CCANNNNNTGG	1 cut(s)	1075
XagI	CCTNNNNNAGG	1 cut(s)	848
XapI	RAATTY	1 cut(s)	695
XceI	RCATGY	1 cut(s)	80
XmnI	GAANNNNTTC	1 cut(s)	922
XspI	CTAG	2 cut(s)	540, 1113
ZrmI	AGTACT	1 cut(s)	922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.