Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7977022.1

Orthogroup ID

OG0004786

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 420

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7977022.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 197 bp

atgtggcacgaagcgaggaggtcggagaggaaagtccacgacatgatggacgctgctcgcaaacgagctcaacgacgtgccgttttcctcgccaaacgccgcggcgatccccagcagtccatccaggtcgtcggctcccgctgccgcctctaccgcgacgacggcctttatcaagccaccgaggatcagcaaggcct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRY_EERY

Protein Analysis

66

Amino Acids

7.83

Weight (kDa)

10.45

Isoelectric Point (pI)

75.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36980 AT4G36980 AT4G36980 AT4G36980
fragaria_vesca	FvH4_1g16060 FvH4_1g16060 FvH4_1g16060 FvH4_1g16060 FvH4_1g16060
malus_domestica	MD02G1172000.v1.1 MD02G1172100.v1.1 MD15G1284200.v1.1 MD15G1284300.v1.1
prunus_persica	Prupe.7G133300_v2.0.a1 Prupe.7G133300_v2.0.a1 Prupe.7G133300_v2.0.a1 Prupe.7G133300_v2.0.a1 Prupe.7G133300_v2.0.a1
pyrus_communis	pycom02g13870 pycom15g24690
rosa_chinensis	RchiOBHm_Chr2g0105671
rosa_laevigata	RLG00000017448
rosa_multiflora	Rmu_co7977022.1_g000001 Rmu_sc0001051.1_g000055
rosa_roxburghii	Rroxscaffold_2G00137990
rosa_rugosa	Rorug02G0129200
rosa_samantha	Rh2AG180800 Rh2BG189900 Rh2CG185000 Rh2DG186800
rosa_wichuraiana	Rw2G014130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	102, 156
AciI	CCGC	5 cut(s)	100, 102, 139, 145, 154
AclWI	GGATC	2 cut(s)	101, 192
AjiI	CACGTC	1 cut(s)	77
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
Alw21I	GWGCWC	1 cut(s)	70
AlwI	GGATC	2 cut(s)	101, 192
AoxI	GGCC	2 cut(s)	163, 193
ApeKI	GCWGC	2 cut(s)	53, 141
BanII	GRGCYC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	40, 128
BccI	CCATC	2 cut(s)	40, 128
BceAI	ACGGC	2 cut(s)	65, 178
BciT130I	CCWGG	1 cut(s)	125
BisI	GCNGC	5 cut(s)	54, 100, 103, 142, 145
BlsI	GCNGC	5 cut(s)	55, 101, 104, 143, 146
Bme1390I	CCNGG	1 cut(s)	125
BmgBI	CACGTC	1 cut(s)	77
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	125
BsaJI	CCNNGG	2 cut(s)	100, 180
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	2 cut(s)	100, 180
BseGI	GGATG	1 cut(s)	120
BseRI	GAGGAG	1 cut(s)	31
BseXI	GCAGC	2 cut(s)	40, 128
BseYI	CCCAGC	1 cut(s)	111
Bsh1236I	CGCG	2 cut(s)	102, 156
BshFI	GGCC	2 cut(s)	165, 195
BsiHKAI	GWGCWC	1 cut(s)	70
BsnI	GGCC	2 cut(s)	165, 195
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	106, 184
BspACI	CCGC	5 cut(s)	100, 102, 139, 145, 154
BspANI	GGCC	2 cut(s)	165, 195
BspFNI	CGCG	2 cut(s)	102, 156
BspLI	GGNNCC	1 cut(s)	136
BspPI	GGATC	2 cut(s)	101, 192
BssECI	CCNNGG	2 cut(s)	100, 180
BssMI	GATC	2 cut(s)	106, 184
Bst2UI	CCWGG	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	58
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	1 cut(s)	120
BstFNI	CGCG	2 cut(s)	102, 156
BstKTI	GATC	2 cut(s)	109, 187
BstMBI	GATC	2 cut(s)	106, 184
BstMWI	GCNNNNNNNGC	3 cut(s)	141, 153, 162
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	123
BstUI	CGCG	2 cut(s)	102, 156
BstV1I	GCAGC	2 cut(s)	40, 128
BsuRI	GGCC	2 cut(s)	165, 195
BtgI	CCRYGG	1 cut(s)	100
BtrI	CACGTC	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	58
Cfr42I	CCGCGG	1 cut(s)	103
CseI	GACGC	1 cut(s)	59
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	5 cut(s)	68, 135, 165, 176, 195
CviKI_1	RGCY	5 cut(s)	68, 135, 165, 176, 195
DpnI	GATC	2 cut(s)	108, 186
DpnII	GATC	2 cut(s)	106, 184
Ecl136II	GAGCTC	1 cut(s)	68
Eco147I	AGGCCT	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	70
Eco53kI	GAGCTC	1 cut(s)	68
EcoICRI	GAGCTC	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	70
FaeI	CATG	1 cut(s)	46
FaiI	YATR	1 cut(s)	44
FatI	CATG	1 cut(s)	42
FauI	CCCGC	1 cut(s)	146
Fnu4HI	GCNGC	5 cut(s)	54, 100, 103, 142, 145
FokI	GGATG	1 cut(s)	107
FriOI	GRGCYC	1 cut(s)	70
Fsp4HI	GCNGC	5 cut(s)	54, 100, 103, 142, 145
GluI	GCNGC	5 cut(s)	54, 100, 103, 142, 145
GsaI	CCCAGC	1 cut(s)	115
HaeIII	GGCC	2 cut(s)	165, 195
HgaI	GACGC	1 cut(s)	59
Hin1II	CATG	1 cut(s)	46
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	1 cut(s)	25
Hpy8I	GTNNAC	1 cut(s)	37
Hpy99I	CGWCG	4 cut(s)	78, 134, 161, 164
HpyCH4IV	ACGT	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	3 cut(s)	141, 153, 162
HpySE526I	ACGT	1 cut(s)	76
Hsp92II	CATG	1 cut(s)	46
KspI	CCGCGG	1 cut(s)	103
Kzo9I	GATC	2 cut(s)	106, 184
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	3 cut(s)	110, 125, 137
Lsp1109I	GCAGC	2 cut(s)	40, 128
MaeII	ACGT	1 cut(s)	76
MalI	GATC	2 cut(s)	108, 186
MboI	GATC	2 cut(s)	106, 184
MhlI	GDGCHC	1 cut(s)	70
MnlI	CCTC	6 cut(s)	9, 12, 21, 98, 158, 175
MspA1I	CMGCKG	2 cut(s)	102, 141
MspR9I	CCNGG	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	125
MvnI	CGCG	2 cut(s)	102, 156
MwoI	GCNNNNNNNGC	3 cut(s)	141, 153, 162
NdeII	GATC	2 cut(s)	106, 184
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	1 cut(s)	136
PceI	AGGCCT	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	1 cut(s)	70
PkrI	GCNGC	5 cut(s)	55, 101, 104, 143, 146
Psp124BI	GAGCTC	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	123
PspFI	CCCAGC	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	1 cut(s)	136
SacI	GAGCTC	1 cut(s)	70
SacII	CCGCGG	1 cut(s)	103
SatI	GCNGC	5 cut(s)	54, 100, 103, 142, 145
Sau3AI	GATC	2 cut(s)	106, 184
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	4 cut(s)	23, 70, 79, 129
Sfr303I	CCGCGG	1 cut(s)	103
SgrBI	CCGCGG	1 cut(s)	103
SseBI	AGGCCT	1 cut(s)	195
SsiI	CCGC	5 cut(s)	100, 102, 139, 145, 154
SstI	GAGCTC	1 cut(s)	70
StuI	AGGCCT	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	123
TaiI	ACGT	1 cut(s)	79
TauI	GCSGC	3 cut(s)	102, 105, 147
TseI	GCWGC	2 cut(s)	53, 141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.