Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004786

Physical Location & Seq

Genomic Coordinates Forward (+)

14956832 .. 14958337

Gene Structure 1506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1172100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCTTCTTCTTTCCTGCAGGCCTTCAACTGGTCTCATACTCGAGGCTCTGCATGTTGATCCTGCATCTGGTGCATCCCCTGAGAAGGATAAAGGCACTAAAGTGGTGAAACCACCAGCAAGCACATCTTCGGCTATAGCTAAGTTAACTAAGGGAAGTACTTCTGTTGGGCCATTGAAGCCGCAACCAGTGGAGAAGAAAGAAACTCCTCAAGAACGACTTAAAAGGATTATGAGTAAGCAGCTGAACAAACAGATTAAGAAAGATACAGCTGCTGAAATAGCTAAAAAGCGAGAGCAGGAGCGTCAGAGGCTGGAAAAACTTGCAGAAACAAGCCGATTAAGTCGATCTAGGCGTCGTAGTCGCAGTAGGAGCTACAGCCGCTCTCCTCCAAGAAGACACCGACGTAGTAGAAGTCCGAGCAGAAGCAAGAGTTCGCGAAGGCGTTATTCCCGTTCCCGGTCTCGGTCTCGTTCTCGTTCTCAATCTCGCTCCCCCTCCCGAACTCGTAATCGTTCACGAACTTATTCCCGCTCGCCAAGGGTTAGGAGCCGTTCAAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRY_EERY

Protein Analysis

189

Amino Acids

21.62

Weight (kDa)

12.0

Isoelectric Point (pI)

130.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36980 AT4G36980 AT4G36980 AT4G36980
fragaria_vesca	FvH4_1g16060 FvH4_1g16060 FvH4_1g16060 FvH4_1g16060 FvH4_1g16060
malus_domestica	MD02G1172000.v1.1 MD02G1172100.v1.1 MD15G1284200.v1.1 MD15G1284300.v1.1
prunus_persica	Prupe.7G133300_v2.0.a1 Prupe.7G133300_v2.0.a1 Prupe.7G133300_v2.0.a1 Prupe.7G133300_v2.0.a1 Prupe.7G133300_v2.0.a1
pyrus_communis	pycom02g13870 pycom15g24690
rosa_chinensis	RchiOBHm_Chr2g0105671
rosa_laevigata	RLG00000017448
rosa_multiflora	Rmu_co7977022.1_g000001 Rmu_sc0001051.1_g000055
rosa_roxburghii	Rroxscaffold_2G00137990
rosa_rugosa	Rorug02G0129200
rosa_samantha	Rh2AG180800 Rh2BG189900 Rh2CG185000 Rh2DG186800
rosa_wichuraiana	Rw2G014130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	384, 534
AccII	CGCG	1 cut(s)	439
AciI	CCGC	3 cut(s)	182, 382, 532
AclWI	GGATC	1 cut(s)	53
AcyI	GRCGYC	1 cut(s)	355
AfaI	GTAC	1 cut(s)	160
AfiI	CCNNNNNNNGG	5 cut(s)	29, 68, 85, 459, 465
AgsI	TTSAA	3 cut(s)	27, 178, 558
AleI	CACNNNNGTG	1 cut(s)	101
AluBI	AGCT	5 cut(s)	140, 244, 272, 284, 375
AluI	AGCT	5 cut(s)	140, 244, 272, 284, 375
Alw26I	GTCTC	3 cut(s)	38, 468, 474
AlwI	GGATC	1 cut(s)	53
AlwNI	CAGNNNCTG	2 cut(s)	275, 313
Ama87I	CYCGRG	1 cut(s)	41
AoxI	GGCC	2 cut(s)	20, 170
ApeKI	GCWGC	2 cut(s)	241, 272
Asp700I	GAANNNNTTC	2 cut(s)	160, 526
AspS9I	GGNCC	1 cut(s)	170
AsuC2I	CCSGG	1 cut(s)	460
AsuHPI	GGTGA	1 cut(s)	118
AvaI	CYCGRG	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	403
BbvI	GCAGC	2 cut(s)	253, 259
BceAI	ACGGC	1 cut(s)	537
BcnI	CCSGG	1 cut(s)	460
BcoDI	GTCTC	3 cut(s)	38, 468, 474
BfaI	CTAG	1 cut(s)	351
BfmI	CTRYAG	3 cut(s)	16, 135, 376
BisI	GCNGC	4 cut(s)	182, 242, 273, 382
BlsI	GCNGC	4 cut(s)	183, 243, 274, 383
BmcAI	AGTACT	1 cut(s)	160
Bme1390I	CCNGG	1 cut(s)	460
BmeT110I	CYCGRG	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	170
BmiI	GGNNCC	1 cut(s)	551
BmrFI	CCNGG	1 cut(s)	460
BmsI	GCATC	2 cut(s)	74, 83
BpiI	GAAGAC	1 cut(s)	403
BpuEI	CTTGAG	1 cut(s)	195
BpuMI	CCSGG	1 cut(s)	460
BsaHI	GRCGYC	1 cut(s)	355
BsaI	GGTCTC	3 cut(s)	38, 468, 474
BsaJI	CCNNGG	1 cut(s)	539
Bsc4I	CCNNNNNNNGG	5 cut(s)	29, 68, 85, 459, 465
Bse1I	ACTGG	2 cut(s)	34, 188
BseDI	CCNNGG	1 cut(s)	539
BseGI	GGATG	1 cut(s)	74
BseLI	CCNNNNNNNGG	5 cut(s)	29, 68, 85, 459, 465
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	2 cut(s)	34, 188
BseRI	GAGGAG	2 cut(s)	198, 378
BseXI	GCAGC	2 cut(s)	253, 259
Bsh1236I	CGCG	1 cut(s)	439
BshFI	GGCC	2 cut(s)	22, 172
BsiHKCI	CYCGRG	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	460
BslI	CCNNNNNNNGG	5 cut(s)	29, 68, 85, 459, 465
BsmAI	GTCTC	3 cut(s)	38, 468, 474
BsnI	GGCC	2 cut(s)	22, 172
Bso31I	GGTCTC	3 cut(s)	38, 468, 474
BsoBI	CYCGRG	1 cut(s)	41
Bsp143I	GATC	2 cut(s)	58, 347
Bsp68I	TCGCGA	1 cut(s)	439
BspACI	CCGC	3 cut(s)	182, 382, 532
BspANI	GGCC	2 cut(s)	22, 172
BspCNI	CTCAG	1 cut(s)	73
BspFNI	CGCG	1 cut(s)	439
BspLI	GGNNCC	1 cut(s)	551
BspMAI	CTGCAG	1 cut(s)	20
BspPI	GGATC	1 cut(s)	53
BspTNI	GGTCTC	3 cut(s)	38, 468, 474
BsrBI	CCGCTC	2 cut(s)	384, 534
BsrI	ACTGG	2 cut(s)	34, 188
BssECI	CCNNGG	1 cut(s)	539
BssMI	GATC	2 cut(s)	58, 347
BssNI	GRCGYC	1 cut(s)	355
BssT1I	CCWWGG	1 cut(s)	539
BstACI	GRCGYC	1 cut(s)	355
BstAPI	GCANNNNNTGC	1 cut(s)	71
BstC8I	GCNNGC	3 cut(s)	20, 121, 536
BstDEI	CTNAG	3 cut(s)	81, 141, 150
BstF5I	GGATG	1 cut(s)	74
BstFNI	CGCG	1 cut(s)	439
BstKTI	GATC	2 cut(s)	61, 350
BstMAI	GTCTC	3 cut(s)	38, 468, 474
BstMBI	GATC	2 cut(s)	58, 347
BstMWI	GCNNNNNNNGC	6 cut(s)	71, 178, 281, 310, 372, 381
BstNSI	RCATGY	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	458
BstSFI	CTRYAG	3 cut(s)	16, 135, 376
BstUI	CGCG	1 cut(s)	439
BstV1I	GCAGC	2 cut(s)	253, 259
BstV2I	GAAGAC	1 cut(s)	403
BsuRI	GGCC	2 cut(s)	22, 172
BtsCI	GGATG	1 cut(s)	74
BtsIMutI	CAGTG	1 cut(s)	195
BtuMI	TCGCGA	1 cut(s)	439
Cac8I	GCNNGC	3 cut(s)	20, 121, 536
CaiI	CAGNNNCTG	2 cut(s)	275, 313
Cfr13I	GGNCC	1 cut(s)	170
CseI	GACGC	2 cut(s)	293, 344
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	1 cut(s)	53
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	3 cut(s)	81, 141, 150
DpnI	GATC	2 cut(s)	60, 349
DpnII	GATC	2 cut(s)	58, 347
Eco130I	CCWWGG	1 cut(s)	539
Eco147I	AGGCCT	1 cut(s)	22
Eco31I	GGTCTC	3 cut(s)	38, 468, 474
Eco88I	CYCGRG	1 cut(s)	41
EcoT14I	CCWWGG	1 cut(s)	539
ErhI	CCWWGG	1 cut(s)	539
FaeI	CATG	1 cut(s)	56
FaiI	YATR	4 cut(s)	38, 54, 137, 233
FalI	AAGNNNNNCTT	4 cut(s)	112, 144, 204, 236
FatI	CATG	1 cut(s)	52
FauI	CCCGC	1 cut(s)	539
Fnu4HI	GCNGC	4 cut(s)	182, 242, 273, 382
FokI	GGATG	1 cut(s)	61
Fsp4HI	GCNGC	4 cut(s)	182, 242, 273, 382
FspBI	CTAG	1 cut(s)	351
GluI	GCNGC	4 cut(s)	182, 242, 273, 382
HaeIII	GGCC	2 cut(s)	22, 172
HapII	CCGG	1 cut(s)	460
HgaI	GACGC	2 cut(s)	293, 344
Hin1I	GRCGYC	1 cut(s)	355
Hin1II	CATG	1 cut(s)	56
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HpaI	GTTAAC	1 cut(s)	147
HpaII	CCGG	1 cut(s)	460
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	2 cut(s)	147, 518
Hpy188I	TCNGA	2 cut(s)	309, 420
Hpy188III	TCNNGA	5 cut(s)	212, 438, 501, 519, 558
Hpy8I	GTNNAC	2 cut(s)	147, 518
Hpy99I	CGWCG	2 cut(s)	360, 408
HpyAV	CCTTC	3 cut(s)	33, 79, 435
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	5 cut(s)	18, 52, 65, 74, 326
HpyF10VI	GCNNNNNNNGC	6 cut(s)	71, 178, 281, 310, 372, 381
HpyF3I	CTNAG	3 cut(s)	81, 141, 150
HpySE526I	ACGT	1 cut(s)	406
Hsp92I	GRCGYC	1 cut(s)	355
Hsp92II	CATG	1 cut(s)	56
KspAI	GTTAAC	1 cut(s)	147
Kzo9I	GATC	2 cut(s)	58, 347
LmnI	GCTCC	4 cut(s)	301, 372, 497, 549
Lsp1109I	GCAGC	2 cut(s)	253, 259
LweI	GCATC	2 cut(s)	74, 83
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	1 cut(s)	406
MalI	GATC	2 cut(s)	60, 349
MbiI	CCGCTC	2 cut(s)	384, 534
MboI	GATC	2 cut(s)	58, 347
MboII	GAAGA	3 cut(s)	120, 208, 408
MnlI	CCTC	5 cut(s)	37, 219, 303, 399, 508
MroXI	GAANNNNTTC	2 cut(s)	160, 526
MseI	TTAA	4 cut(s)	146, 222, 258, 341
MslI	CAYNNNNRTG	1 cut(s)	101
MspA1I	CMGCKG	2 cut(s)	244, 272
MspI	CCGG	1 cut(s)	460
MspR9I	CCNGG	1 cut(s)	460
MvnI	CGCG	1 cut(s)	439
MwoI	GCNNNNNNNGC	6 cut(s)	71, 178, 281, 310, 372, 381
NciI	CCSGG	1 cut(s)	460
NdeII	GATC	2 cut(s)	58, 347
NlaIII	CATG	1 cut(s)	56
NlaIV	GGNNCC	1 cut(s)	551
NruI	TCGCGA	1 cut(s)	439
NspI	RCATGY	1 cut(s)	56
OliI	CACNNNNGTG	1 cut(s)	101
PaeR7I	CTCGAG	1 cut(s)	41
PceI	AGGCCT	1 cut(s)	22
PcsI	WCGNNNNNNNCGW	1 cut(s)	352
PdmI	GAANNNNTTC	2 cut(s)	160, 526
PkrI	GCNGC	4 cut(s)	183, 243, 274, 383
PspN4I	GGNNCC	1 cut(s)	551
PspPI	GGNCC	1 cut(s)	170
PspXI	VCTCGAGB	1 cut(s)	41
PstI	CTGCAG	1 cut(s)	20
PstNI	CAGNNNCTG	2 cut(s)	275, 313
PvuII	CAGCTG	2 cut(s)	244, 272
RruI	TCGCGA	1 cut(s)	439
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	4 cut(s)	146, 222, 258, 341
SatI	GCNGC	4 cut(s)	182, 242, 273, 382
Sau3AI	GATC	2 cut(s)	58, 347
Sau96I	GGNCC	1 cut(s)	170
SbfI	CCTGCAGG	1 cut(s)	20
ScaI	AGTACT	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	460
SdaI	CCTGCAGG	1 cut(s)	20
SetI	ASST	6 cut(s)	142, 246, 274, 286, 377, 409
SfaNI	GCATC	2 cut(s)	74, 83
SfcI	CTRYAG	3 cut(s)	16, 135, 376
Sfr274I	CTCGAG	1 cut(s)	41
SlaI	CTCGAG	1 cut(s)	41
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	2 cut(s)	41, 210
SmoI	CTYRAG	2 cut(s)	41, 210
Sse8387I	CCTGCAGG	1 cut(s)	20
SseBI	AGGCCT	1 cut(s)	22
SsiI	CCGC	3 cut(s)	182, 382, 532
SspMI	CTAG	1 cut(s)	351
StuI	AGGCCT	1 cut(s)	22
StyD4I	CCNGG	1 cut(s)	458
StyI	CCWWGG	1 cut(s)	539
TaiI	ACGT	1 cut(s)	409
TaqI	TCGA	2 cut(s)	42, 346
TaqII	GACCGA	1 cut(s)	456
TatI	WGTACW	1 cut(s)	158
TauI	GCSGC	2 cut(s)	184, 384
Tru1I	TTAA	4 cut(s)	146, 222, 258, 341
Tru9I	TTAA	4 cut(s)	146, 222, 258, 341
TscAI	CASTG	1 cut(s)	195
TseI	GCWGC	2 cut(s)	241, 272
TspRI	CASTG	1 cut(s)	195
XceI	RCATGY	1 cut(s)	56
XhoI	CTCGAG	1 cut(s)	41
XmnI	GAANNNNTTC	2 cut(s)	160, 526
XspI	CTAG	1 cut(s)	351
ZrmI	AGTACT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.